Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
1,118
datasets available to search
ShareScore release 0.9.0
Dataset results
1,118 results for “Time series”
Time-series transcriptional profiling of MazF-induced E. coli populations
GEO Series GSE94998. Escherichia coli K-12. 10 samples. Type: Expression profiling by high throughput sequencing.
Time series of motor neuronal translatomes over the course of neuroinflammation
GEO Series GSE220951. Mus musculus. 46 samples. Type: Expression profiling by high throughput sequencing.
Eucalyptus xylem diurnal time series
GEO Series GSE11731. Eucalyptus camaldulensis x Eucalyptus grandis; Eucalyptus grandis x Eucalyptus urophylla; Eucalyptus grandis; Eucalyptus tereticornis. 24 samples. Type: Expression profiling by array.
Time-series transcription microarray data of Streptomyces coelicolor M145-OA
GEO Series GSE100343. Streptomyces coelicolor. 7 samples. Type: Expression profiling by array.
Time-Series Multi-Omics Identifies ZG16 as a Prognostic Immunoregulatory Driver of Colitis-associated Colon Cancer Development and Checkpoint Blockade Response
GEO Series GSE302850. Mus musculus. 5 samples. Type: Expression profiling by high throughput sequencing.
Transcriptome analysis of pulsed activation of MAPK signaling in HEK-RAF-ER cells [RNA_seq_pulse_time_series]
GEO Series GSE250533. Homo sapiens. 24 samples. Type: Expression profiling by high throughput sequencing.
Clockwork orange-mediated control of sugar responsive transcription [time series]
GEO Series GSE207197. Drosophila melanogaster. 16 samples. Type: Expression profiling by high throughput sequencing.
Expression data from mir-429 transfected HEY cells in a time-point series (0hr-HEY, 24hrs, 48hrs and 144hrs)
GEO Series GSE111139. Homo sapiens. 21 samples. Type: Expression profiling by array.
TGF or TNF Time series in ARPE19
GEO Series GSE15205. Homo sapiens. 12 samples. Type: Expression profiling by array.
Cardiac differentiation of mESCs and analysis of chromatin accessibility time series
GEO Series GSE183767. Mus musculus. 24 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Time series serum stimulation of ES cells of different Srf genotype
GEO Series GSE1949. Mus musculus. 15 samples. Type: Expression profiling by array.
Time series from "Telescope: An Automatic Feature Extraction and Transformation Approach for Time Series Forecasting on a Level-Playing Field"
<p>Time Series used in the evaluation of "Telescope: An Automatic Feature Extraction and Transformation Approach for Time Series Forecasting on a Level-Playing Field"</p>
Time Series Charactersitics of Forecasting Competitions
<p>We calculate different time series characteristics for our data set (libra) and the time series competitions M1, M3, M4, NN3, NN5, NNGC1, and Tourism.</p>
Time series of fluxes, biochemical and spectral variables simulated SCOPE model
<p>The dataset contains:</p> <ul> <li>Time series of fluxes, biochemical and spectral variables simulated with Soil Canopy Observation of Photochemistry and Energy fluxes (SCOPE) model, parameterized using structural vegetation parameters as well as meteorological data from the research station of Majadas de Tiétar (39°56′24.68″N, 5°45′50.27″W) (Cáceres, Spain)</li> <li>Time series of decomposed Photochemical Reflectance Index, far-red solar-induced chlorophyll fluorescence and far-red fluorescence yield into seasonal, diurnal and sub-diurnal components with Singular Spectrum Analysis</li> </ul>
ADHD200 preprocessed regional time series processed with NIAK and the ROI1000 brain parcellation
<p>See README.md.</p>
DATA _2.0_of "Time series characteristics of terrain data:Topography drives history"
Open the record for dataset details and reuse information.
Landsat 8-day surface reflectance time series over forests in the Greater Khingan Mountains and Ziwuling regions of China
<p>The dataset is associated with a research article "A new spatial-temporal depthwise separable convolutional fusion network for generating Landsat 8-day surface reflectance time series over forest regions".</p>
National-scale crop type maps for Germany from combined time series of Sentinel-1, Sentinel-2 and Landsat 8 data (2020)
<p>This data set contains information on the agricultural land use in Germany for the year 2020.<br> The map was derived from dense time series of Sentinel-2 and Landsat 8 data, Sentinel-1 monthly composites and addtional environmental data. It is based on the methods described in <a href="https://www.sciencedirect.com/science/article/pii/S0034425721005514">Blickensdörfer et al. 2022</a> and can be seen as a continuation of the dataset provided under: <a href="http://zenodo.org/record/5153047#.YWFyXn1CREZ">https://zenodo.org/record/5153047#.YWFyXn1CREZ</a>.<br> The maps can be explored online in a <a href="https://ows.geo.hu-berlin.de/webviewer/landwirtschaft/">webviewer</a>.</p> <p>Due to specific user needs the class catalogue was slightly modified but a translation key (Table 1) and a translated map version (*_V1.tif) is provided. However, it has to be noted that some rather small classes in the previous maps were not differentiated anymore (e.g., onions, carrots, asparagus).Thus, the classes 34, 43, 92, 130, 140, 181 and 182 were excluded from the raster and legend files.</p> <p> </p> <p>Table 1: Updated class catalogue and translation key to the class catalogue used in Blickensdörfer et al. 2022.</p> <table> <tbody> <tr> <td> <p><strong>New class code (V2) </strong></p> </td> <td> <p><strong>Class name (V2)</strong></p> </td> <td> <p><strong>Class code (V1)</strong></p> </td> <td> <p><strong>Class name (V1)</strong></p> </td> </tr> <tr> <td> <p>1101</p> </td> <td> <p>Winter wheat</p> </td> <td> <p>31</p> </td> <td> <p>Winter wheat</p> </td> </tr> <tr> <td> <p> </p> </td> <td> <p> </p> </td> <td> <p>34</p> </td> <td> <p>Other winter cereals</p> </td> </tr> <tr> <td> <p>1102</p> </td> <td> <p>Winter barley</p> </td> <td> <p>33</p> </td> <td> <p>Winter barley</p> </td> </tr> <tr> <td> <p>1103</p> </td> <td> <p>Winter rye</p> </td> <td> <p>32</p> </td> <td> <p>Winter rye</p> </td> </tr> <tr> <td> <p>1201</p> </td> <td> <p>Spring barley</p> </td> <td> <p>41</p> </td> <td> <p>Spring barley</p> </td> </tr> <tr> <td> </td> <td> </td> <td> <p>43</p> </td> <td> <p>Other spring cereals</p> </td> </tr> <tr> <td> <p>1202</p> </td> <td> <p>Oat</p> </td> <td> <p>42</p> </td> <td> <p>Spring oat</p> </td> </tr> <tr> <td> <p>1300</p> </td> <td> <p>Maize</p> </td> <td> <p>91</p> </td> <td> <p>Maize (silage)</p> </td> </tr> <tr> <td> </td> <td> </td> <td> <p>92</p> </td> <td> <p>Maize (grain)</p> </td> </tr> <tr> <td> <p>1401</p> </td> <td> <p>Potatoe</p> </td> <td> <p>100</p> </td> <td> <p>Potatoe</p> </td> </tr> <tr> <td> <p>1402</p> </td> <td> <p>Sugar beet</p> </td> <td> <p>80</p> </td> <td> <p>Sugar beet</p> </td> </tr> <tr> <td> <p>1501</p> </td> <td> <p>Rapeseed</p> </td> <td> <p>50</p> </td> <td> <p>Winter rapeseed</p> </td> </tr> <tr> <td> <p>1502</p> </td> <td> <p>Sunflower</p> </td> <td> <p>70</p> </td> <td> <p>Sunflower</p> </td> </tr> <tr> <td> <p>1611</p> </td> <td> <p>Peas</p> </td> <td> <p>60</p> </td> <td> <p>Legume</p> </td> </tr> <tr> <td> <p>1612</p> </td> <td> <p>Broad beans</p> </td> <td> </td> <td> </td> </tr> <tr> <td> <p>1613</p> </td> <td> <p>Lupine</p> </td> <td> </td> <td> </td> </tr> <tr> <td> <p>1614</p> </td> <td> <p>Soy</p> </td> <td> </td> <td> </td> </tr> <tr> <td> <p>1603</p> </td> <td> <p>Vegetables</p> </td> <td> <p>120</p> </td> <td> <p>Strawberry</p> </td> </tr> <tr> <td> </td> <td> </td> <td> <p>130</p> </td> <td> <p>Asparagus</p> </td> </tr> <tr> <td> </td> <td> </td> <td> <p>140</p> </td> <td> <p>Onion</p> </td> </tr> <tr> <td> </td> <td> </td> <td> <p>181</p> </td> <td> <p>Carrot</p> </td> </tr> <tr> <td> </td> <td> </td> <td> <p>182</p> </td> <td> <p>Other leafy vegetables</p> </td> </tr> <tr> <td> <p>1602</p> </td> <td> <p>Cultivated grassland</p> </td> <td> <p>10</p> </td> <td> <p>Grassland</p> </td> </tr> <tr> <td> <p>200</p> </td> <td> <p>Permanent grassland</p> </td> <td> </td> <td> </td> </tr> <tr> <td> <p>3003</p> </td> <td> <p>Fallow land</p> </td> <td> </td> <td> </td> </tr> <tr> <td> <p>3001</p> </td> <td> <p>Small woody features</p> </td> <td> <p>555</p> </td> <td> <p>Small woody features</p> </td> </tr> <tr> <td> <p>3002</p> </td> <td> <p>Other areas</p> </td> <td> <p>999</p> </td> <td> <p>Other agricultural areas</p> </td> </tr> <tr> <td> <p>4001</p> </td> <td> <p>Grapevine</p> </td> <td> <p>110</p> </td> <td> <p>Grapevine</p> </td> </tr> <tr> <td> <p>4002</p> </td> <td> <p>Hops</p> </td> <td> <p>150</p> </td> <td> <p>Hops</p> </td> </tr> <tr> <td> <p>4003</p> </td> <td> <p>Orchard</p> </td> <td> <p>160</p> </td> <td> <p>Orchards</p> </td> </tr> </tbody> </table> <p> </p> <p>All optical satellite data were downloaded, pre-processed and structured in an analysis-ready data (ARD) cube using the open-source software FORCE - Framework for Operational Radiometric Correction for Environmental monitoring (Frantz, D., 2019; <a href="https://force-eo.readthedocs.io/en/latest/">https://force-eo.readthedocs.io/en/latest/</a> last accessed: 12. April 2022), before environmental and SAR data were included in the ARD cube. </p> <p>The models were trained in FORCE and applied to all areas in Germany that were defined as agricultural land, small woody features, heathland or peatland in ATKIS DLM 2020 (Geobasisdaten: © GeoBasis-DE / BKG (2020)). Post-processing of the final maps included applying a sieve filter, the exclusion of classes other than grasslands and small woody features above 900 m (based on the Digital Elevation Model for Germany BKG (2015)) and the exclusion of grapevine and hops areas that were not labelled as the respective permanent crop in ATKIS DLM (BKG (2020); labelled as other agricultural areas in the final map). <br> </p> <p>The maps are provided as GeoTiff files together with QGIS legend files for visualization. </p> <p> </p> <p>References:</p> <p>Blickensdörfer, L., Schwieder, M., Pflugmacher, D., Nendel, C., Erasmi, S., & Hostert, P. (2022). Mapping of crop types and crop sequences with combined time series of Sentinel-1, Sentinel-2 and Landsat 8 data for Germany. Remote Sensing of Environment, 269, 112831</p> <p>BKG, Bundesamt für Kartographie und Geodäsie (2015). Digitales Geländemodell Gitterweite 10 m. DGM10. https://sg.geodatenzentrum.de/web_public/gdz/dokumentation/deu/dgm10.pdf (last accessed: 28. April 2022). </p> <p>BKG, Bundesamt für Kartographie und Geodäsie (2018). Digitales Basis-Landschaftsmodell. <br> https://sg.geodatenzentrum.de/web_public/gdz/dokumentation/deu/basis-dlm.pdf (last accessed: 28. April 2022).</p> <p>Frantz, D. (2019). FORCE—Landsat + Sentinel-2 Analysis Ready Data and Beyond. Remote Sensing, 11, 1124.</p> <p> </p> <p><a href="https://zenodo.org/record/5153047#.YhYwgpYxmUn">National-scale crop type maps for Germany </a>© 2022 by Schwieder, Marcel; Erasmi, Stefan; Nendel, Claas; Hostert, Patrick is licensed under <a href="http://creativecommons.org/licenses/by/4.0/?ref=chooser-v1">CC BY 4.0. </a></p>
Apulian Aqueduct demo site: daily time series of reservoirs water levels and total releases 2010-2019
<p>This dataset contains the time series of water levels and total releases (including spillways) measured by the competent authority for the main reservoirs of Apulian aqueduct (demo site 1), at a daily time step.</p> <ul> <li>Temporal coverage: 2010-2019</li> <li>Spatial coverage: Reservoirs: Conza, Locone, Monte Cotugno, Occhito, Pertusillo</li> <li>Unit of measure: <ul> <li>water level: masl</li> <li>releases: m<sup>3</sup>/sec</li> </ul> </li> </ul> <p>More information and details on the content of this dataset can be found in Project Ô Deliverable D4.1.</p>
National-scale crop type maps for Germany from combined time series of Sentinel-1, Sentinel-2 and Landsat 8 data (2017, 2018 and 2019)
<p>Detailed maps of agricultural landscapes are a valuable data source for manifold applications, such as environmental modelling, biodiversity monitoring or the support of agricultural statistics. Satellites from the European Copernicus program, especially, Sentinel-1 and Sentinel-2, as well as the Landsat missions operated by NASA/USGS, acquire data with a spatial resolution (10 m to 30 m) that is sufficient to identify field structures in complex agricultural landscapes. Time series of combined Sentinel-2 and Landsat data facilitate to differentiate crop types with a high thematic detail based on differences in land surface phenology. However, large data gaps due to frequent cloud cover may hamper such classification approaches. </p> <p>We thus combined dense interpolated times series of Sentinel-2A/B and Landsat data with monthly composites of Sentinel-1 backscatter data to overcome periods with high cloud contamination. To further account for regional variations along the agroecological gradient within Germany, we additionally included a broad set of spatially explicit environmental data in a random forest classification model. </p> <p>All optical satellite data were downloaded, pre-processed and structured in an analysis-ready data (ARD) cube using the open-source software FORCE - Framework for Operational Radiometric Correction for Environmental monitoring (Frantz, D., 2019; <a href="https://force-eo.readthedocs.io/en/latest/">https://force-eo.readthedocs.io/en/latest/</a> last accessed: 19. August 2021), before environmental and SAR data were included in the ARD cube. </p> <p>For each year (2017, 2018 and 2019) we trained an individual random forest model with 24 agricultural classes. Each model was independently validated with area adjusted overall accuracies of 80% (2017), 79% (2018), and 78% (2019). Further details regarding the data and methods used as well as class wise accuracies can be found in Blickensdörfer et al. (2022). </p> <p>The final models were applied to areas in Germany that were defined as agricultural land in ATKIS DLM 2018 (Geobasisdaten: © GeoBasis-DE / BKG (2018)). Post-processing of the final maps included applying a sieve filter, the exclusion of classes other than grasslands and small woody features above 900 m (based on the Digital Elevation Model for Germany BKG (2015)) and the exclusion of grapevine/hops areas that were not labelled as the respective permanent crop in ATKIS DLM (labelled as other agricultural areas in the final map). </p> <p>The maps are provided as GeoTiff files together with a QGIS legend file for visualization. </p> <p>Class catalogue:</p> <p>10 Grassland<br> 31 Winter wheat<br> 32 Winter rye<br> 33 Winter barley<br> 34 Other winter cereal<br> 41 Spring barley<br> 42 Spring oat<br> 43 Other spring cereal<br> 50 Winter rapeseed<br> 60 Legume<br> 70 Sunflower<br> 80 Sugar beet<br> 91 Maize<br> 92 Maize (grain)<br> 100 Potato<br> 110 Grapevine<br> 120 Strawberry<br> 130 Asparagus<br> 140 Onion<br> 150 Hops<br> 160 Orchard<br> 181 Carrot<br> 182 Other vegetables<br> 555 Small woody features<br> 999 Other agricultural areas</p> <p> </p> <p>Blickensdörfer, L., Schwieder, M., Pflugmacher, D., Nendel, C., Erasmi, S., & Hostert, P. (2022). Mapping of crop types and crop sequences with combined time series of Sentinel-1, Sentinel-2 and Landsat 8 data for Germany. Remote Sensing of Environment, 269, 112831</p> <p>BKG, Bundesamt für Kartographie und Geodäsie (2015). Digitales Geländemodell Gitterweite 10 m. DGM10. https://sg.geodatenzentrum.de/web_public/gdz/dokumentation/deu/dgm10.pdf (last accessed: 19. August 2021). </p> <p>BKG, Bundesamt für Kartographie und Geodäsie (2018). Digitales Basis-Landschaftsmodell. <br> https://sg.geodatenzentrum.de/web_public/gdz/dokumentation/deu/basis-dlm.pdf (last accessed: 19. August 2021).</p> <p>Frantz, D. (2019). FORCE—Landsat + Sentinel-2 Analysis Ready Data and Beyond. Remote Sensing, 11, 1124.</p> <p> </p> <p><a href="https://zenodo.org/record/5153047#.YhYwgpYxmUn">National-scale crop type maps for Germany </a>© 2021 by Blickensdörfer, Lukas; Schwieder, Marcel; Pflugmacher, Dirk; Nendel, Claas; Erasmi, Stefan; Hostert, Patrick is licensed under <a href="http://creativecommons.org/licenses/by/4.0/?ref=chooser-v1">CC BY 4.0. </a></p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.