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4,937 results for “Endemic species”
Thermal requirements for egg development of two endemic Wiseana pest species (Lepidoptera: Hepialidae) of economic importance
<p>Raw and analyzed data for our paper title "Thermal requirements for egg development of two endemic <em>Wiseana</em> pest species (Lepidoptera: Hepialidae) of economic importance". </p>
Map 1 in Clusia falcata (Clusiaceae), an endangered species with exceptionally narrow leaves endemic to Chiapas, Mexico
Map 1. Distribution map of Clusia falcata in Chiapas, Mexico.
A new, narrowly endemic species of swamp-dwelling dusky salamander (Plethodontidae: Desmognathus) from the Gulf Coastal Plain of Mississippi and Alabama
<p>We describe a new, narrowly endemic species of swamp-dwelling dusky salamander (Plethodontidae: Desmognathus pascagoula sp. nov.) from the Gulf Coastal Plain of southeastern Mississippi and southwestern Alabama based on linear morphometrics, mitochondrial DNA, and single nucleotide polymorphisms from 881 loci produced using genotype-by-sequencing. Some populations of the new species were historically referred to as D. auriculatus, a polyphyletic assemblage of at least three species in the Atlantic and Gulf Coastal Plain from Texas to North Carolina. Populations of D. auriculatus from the Gulf Coastal Plain in Louisiana and Mississippi were recently described as D. valentinei. The new species includes populations that were tentatively referred to D. valentinei, but we find it is morphologically, genetically, and geographically distinct. It is smaller, has a more defined dorsal color pattern, more irregular whitish "portholes" in up to three rows on the lateral surfaces of the body and tail, and a brighter orange or yellowish orange postocular stripe. At present, the new species is known from only six extant populations in the lower Pascagoula, Escatawpa, and Mobile drainages. The latter represents a distinct phylogeographic lineage. We also refer a historical collection from the northeastern side of the Mobile-Tensaw River Delta to this species, suggesting a much broader range in the past. We suspect that more populations remain to be discovered in the area, and their potential species-level distinctiveness should be tested further. This discovery increases knowledge of the biodiversity in the southeastern United States Coastal Plain, a candidate region meeting the global criteria for a "biodiversity hotspot," and underscores the amount of cryptic diversity likely remaining to be discovered and described in Nearctic salamanders.</p>
Description of two new species and phylogenetic placement of recent taxonomic novelties in the Chilean endemic genus Miersia (Gilliesieae, Allioideae, Amaryllidaceae)
<p>Abstract: Two new species in the Chilean endemic genus <em>Miersia</em> (Gilliesieae, Allioideae, Amaryllidaceae) are introduced: <em>M. stellata</em> and <em>M. raucoana</em>. A morphological description, distribution map, illustration, and the assessment of their conservation status are provided for each new taxon, along with an updated key to all species in <em>Miersia</em>. Additionally, analyses of DNA sequences were performed to inquire the evolutionary affinities of both new species and the recently described, <em>M. putaendensis</em>, within Gilliesieae phylogenetic framework. Data from multiple single-copy nuclear genes, as well as the inclusion of <em>Trichlora</em> and <em>Schickendantziella</em>, are necessary to corroborate the tribe’s phylogeny and reassess its generic classification.</p> <p>Dataset description: Two phylip alignment files were uploaded: 1) Miersia_nov_ITS_3.0.phy, includes sequences of nrDNA ITS (nrITS) region, and 2) Miersia_nov_cpDNA_3.0.phy, includes concatenated sequences of two chloroplast (cpDNA) markers, <em>trnL-F</em> and <em>rbcL</em>. Sequences were aligned using MAFFT v.1.4.0.</p> <p>Three *.bestTree.tre files for 1) nrITS, 2) cpDNA, and 3) concatenated dataset of all loci (nrITS, <em>trnL-F</em>, <em>rbcL</em>). All were inferred using RAxML-NG v.1.1.0 (Kozlov et al. 2019), GTR+Γ as the model of molecular evolution (--model GTR+G), and partitioned by locus. nrITS and cpDNA analyses were performed conducting 50 tree searches using 25 random and 25 parsimony-based starting trees to pick the best-scoring topology (--tree pars{25},rand{25}), and the concatenated analysis included 100 tree searches using 50 random and 50 parsimony-based starting trees (--tree pars{50},rand{50}). </p> <p>Also, the respective boostrap trees (*.bootstraps.tre) were uploaded for each analysis. Likelihood bootstrap analyses were conducted in RAxML-NG v.1.1.0 with 1,000 pseudoreplicates (--bs-trees 1000).</p> <p>We also uploaded two Nexus files which correspond to sequence data from Escobar et al. (2020, Bot. J. Linn. Soc. 194: 84–99), considering that these are currently not available in TreeBase.</p>
Fig 7 in Two new species of the genus Omoplax (Hemiptera: Heteroptera: Tingidae) from Mukojima Island, with new records of lace bugs endemic to the Ogasawara Islands, Japan
Fig 7. Syntype of Omoplax desecta (Horváth, 1912) deposited in ELHU and its labels.
Dataset: Habitat suitability models to make conservation decisions based on areas of high species richness and endemism
<p>This repository contains the files associated with the following article:</p> <p>Hernández-Quiroz NS, EI Badano, F Barragán-Torres, J Flores & C Pinedo-Álvarez. Habitat suitability models to make conservation decisions based on areas of high species richness and endemism. Biodiversity and Conservation, 27, pp. 3185-3200. <a href="https://doi.org/10.1007/s10531-018-1596-9">https://doi.org/10.1007/s10531-018-1596-9</a></p> <p>The Microsoft Excel file (SM 01-Oak occurrences.xlsx) contains the occurrence points used to calibrate the habitat suitability model of each oak species (59 species in total). This file indicates the name of the species (column A), latitude and longitude of each occurrence point (columns B and C; in geographic coordinates) and the full set of bioclimatic variables (columns D-V) and topographic variables (columns W-Z) associated to each point. These later data are provided as they were gathered from the bioclimatic layers of WorldClim and the topographic layers of the Mexican National Institute of Statistics and Geography. The repository also contains interactive maps indicating the predicted and observed distributions of the 59 Mexican oak species (SM 02-Estimated oak distribution ranges.kmz), and the probability-based and occurrence-based map of oak richness and endemic species (SM 03-Oak richness maps.kmz). These geographic projections are provided in KMZ format to make them easy to visualize in Google Earth (freely available at www.google.com/earth). Details about these KMZ files can be consulted by accessing the file properties after opening them in Google Earth.</p>
Fig. 11 in Endemism on a threatened sky island: new and rare species of herpetofauna from Cerro Chucantí, Eastern Panama
Fig. 11. Species richness across habitats, as average species per transect (#species/transect).
Fig. 1 in An endemic new species of Andean lizard of the genus Liolaemus from southern Peru (Iguania: Liolaemidae) and its phylogenetic position
Fig. 1. Phylogenetic tree obtained using Bayesian Methods (BM).
Fig 4 in Ptilagrostis contracta (Stipeae, Poaceae), a New Species Endemic to Qinghai-Tibet Plateau
Fig 4. Distribution map of Ptilagrostis contracta. doi:10.1371/journal.pone.0166603.g004
Figure 5 in Fregetta lineata (Peale, 1848) is a valid extant species endemic to New Caledonia
Figure 5. Principal Component Analysis showing contribution of variables to axes 1 and 2.
Fig.1 in Preliminary Studies On The Genetic Diversity Of An Endemic And Endangered Species Saussurea Esthonica Baer Ex Rupr. In Latvia
Fig.1 Genetic diversity measures between populations based on retrotransposon markers
Fig.3 in Preliminary Studies On The Genetic Diversity Of An Endemic And Endangered Species Saussurea Esthonica Baer Ex Rupr. In Latvia
Fig.3 Principal coordinate analysis based on retrotransposon analysis
Fig. 4 in Pichonia munzingeri (Sapotaceae), a new and rare micro-endemic species from New Caledonia
Fig. 4. – Geographic distribution of Pichonia munzingeri Gâteblé & Swenson.
Figure 2 in Development of empirical standard weight equation for Pursak chub Squalius pursakensis, an endemic cyprinid species of Northwest Anatolia
Figure 2. Area of distribution of Squalius pursakensis (dark gray area).
Figure 1 in Development of empirical standard weight equation for Pursak chub Squalius pursakensis, an endemic cyprinid species of Northwest Anatolia
Figure 1. Squalius pursakensis from Seydi Suyu in Sakarya Basin (445 mm TL).
TABLE 1 in Are some of the birds endemic to the Tres Marías Islands (Mexico) species?
<p>TABLE 1 Bird taxa endemic or nearly endemic to the Tres Marías islands. Taxa considered herein to be species are in boldface.</p><table><tbody><tr><th>Scientific name</th><th>English name</th></tr></tbody><tbody><tr><th><i>Patagioenas flavirostris madrensis</i></th><td>Red-billed Pigeon</td></tr><tr><th><i>Leptotila verreauxi capitalis</i></th><td>White-tipped Dove</td></tr><tr><th><i>Nyctidromus albicollis insularis</i></th><td>Common Pauraque</td></tr><tr><th><i>Cynanthus latirostris lawrencei</i></th><td>Broad-billed Hummingbird</td></tr><tr><th><i>Amazilia rutila graysoni</i></th><td>Cinnamon Hummingbird</td></tr><tr><th><i>Buteo jamaicensis fumosus</i></th><td>Red-tailed Hawk</td></tr><tr><th><i>Picoides scalaris graysoni</i></th><td>Ladder-backed Woodpecker</td></tr><tr><th><i>Caracara cheriway pallidus</i></th><td>Crested Caracara</td></tr><tr><th><i>Forpus cyanopygius insularis</i></th><td>Mexican Parrotlet</td></tr><tr><th><i>Amazona oratrix tresmariae</i></th><td>Yellow-headed Parrot</td></tr><tr><th><i>Myiopagis viridicata minima</i></th><td>Greenish Elaenia</td></tr><tr><th><i>Pachyramphus aglaiae insularis</i></th><td>Rose-throated Becard</td></tr><tr><th><i>Vireo hypochryseus sordidus</i></th><td>Golden Vireo</td></tr><tr><th><i>Vireo flavoviridis forreri</i></th><td>Yellow-green Vireo</td></tr><tr><th><i>Pheugopedius felix lawrencii</i></th><td>Happy Wren</td></tr><tr><th><i>Myadestes occidentalis insularis</i></th><td>Brown-backed Solitaire</td></tr><tr><th><i>Turdus rufopalliatus graysoni</i></th><td>Rufous-backed Robin</td></tr><tr><th><i>Melanotis caerulescens longirostris</i></th><td>Blue Mockingbird</td></tr><tr><th><i>Spinus psaltria witi</i></th><td>Lesser Goldfinch</td></tr><tr><th><i>Setophaga pitiayumi insularis</i></th><td>Tropical Parula</td></tr><tr><th><i>Piranga bidentata flammea</i></th><td>Flame-coloured Tanager</td></tr><tr><th><i>Cardinalis cardinalis mariae</i></th><td>Northern Cardinal</td></tr><tr><th><i>Granatellus venustus francescae</i></th><td>Red-breasted Chat</td></tr><tr><th><i>Icterus pustulatus graysonii</i></th><td>Streak-backed Oriole</td></tr></tbody></table>
Figure 2 in Endemic freshwater planarians of Sardinia: Redescription of Dugesia hepta (Platyhelminthes, Tricladida) with a comparison of the Mediterranean species of the genus
Figure 2. Dugesia hepta. External features (from photographs of living specimens).
Figure 4 in The Herpetofauna from Ilha Grande (Angra dos Reis, Rio de Janeiro, Brazil): updating species composition, richness, distribution and endemisms
Figure 4. Specimen of Corallus hortulanus (not collected) found in Vila do Aventureiro village, Ilha Grande (Photo by F.B.S. Telles).
Figure 3 in The Herpetofauna from Ilha Grande (Angra dos Reis, Rio de Janeiro, Brazil): updating species composition, richness, distribution and endemisms
Figure 3. New records of snakes for Ilha Grande. (A) Dipsas indica (Photo by D. Cunha-Passos); (B) Echinantera cephalostriata (Photo by P. Fatorelli).
Figure 1 in The Herpetofauna from Ilha Grande (Angra dos Reis, Rio de Janeiro, Brazil): updating species composition, richness, distribution and endemisms
Figure 1. Image of Ilha Grande with the localities where the species were recorded, and their respective density points of species. CAX = Caxadaço trail; CDM = Costão do Demo, RBEPS; EAD = Abraão-Dois Rios road; FPS = Forest of Praia do Sul; JAR = Jararaca trail, Dois Rios; LPM = Lopes Mendes; PAP = Pico do Papagaio; PRN = Parnaioca trail; RPS = Restinga of Praia do Sul; VAB = Vila do Abraão; VAV = Vila do Aventureiro; VDR = Vila Dois Rios.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.