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23,670 results for “Site”
Pathogenic Leptospira isolated from rodents in New Orleans, Louisiana USA, and associated site information
<p>Land use change can elevate disease risk by creating conditions beneficial to species that carry zoonotic pathogens. Observations of concordant global trends in pathogen prevalence and disease incidence have engendered concerns that urbanization could increase transmission risk of some pathogens. Yet host-pathogen relationships underlying transmission risk have not been well characterized within cities, even where contact between humans and species capable of transmitting pathogens of concern occur. We addressed this deficit by testing the hypothesis that areas in cities experiencing greater population loss and infrastructure decline (i.e., counter-urbanization) can support a greater diversity of host species and a larger and more diverse pool of pathogens. We did so by characterizing pathogenic <em>Leptospira</em> infection relative to rodent host richness and abundance across a mosaic of abandonment in post-Katrina New Orleans (Louisiana, USA). We found that <em>Leptospira</em> infection loads were highest in areas that harbored higher rodent species richness. Areas with greater host co-occurrence also harbored a greater number of hosts, including the most competent hosts, indicating that <em>Leptospira </em>infection is amplified by increases in overall and relative host abundance. Evidence of shared infection among rodent hosts indicates that cross-species transmission of <em>Leptospira </em>likely increases infection at sites with greater host syntopy. Additionally, evidence that rodent co-occurrence and abundance and <em>Leptospira</em> infection load parallel abandonment suggests that counter-urbanization can elevate zoonotic disease risk within cities, particularly in underserved communities that are burdened with disproportionate concentrations of derelict properties.</p>
Print do Site Brasil.io
<p>A missão do Brasil.io</p> <p>"Nossa missão é tornar acessíveis os dados brasileiros de interesse público e temos como valores principais a transparência e colaboração. Dessa maneira, tudo o que produzimos pode ser verificável, pois além de disponibilizarmos os dados em formatos abertos, nosso software é livre e produzimos tudo isso de maneira colaborativa. Entre em nosso chat para saber como colaborar ou em nosso repositório de código no GitHub." Fonte: <a href="https://brasil.io/manifesto/">https://brasil.io/manifesto/</a></p> <p>O Brasil.io é mantido com muito carinho por Álvaro Justen e contribuidores.</p> <p><strong>Descrição do Calebe: </strong>Uma colaboração e fomento para o uso dos dados abertos governamentais para transformar o Brasil em um lugar melhor.</p>
Figs 128–131 in Exceptional diversity of Tischeriidae (Lepidoptera) from a single tropical forest site in Belize, Central America
Figs 128–131. Male genitalia of Tischeriidae from Las Cuevas, Belize (NHMUK). 128. Paratischeria neotropicana (Diškus & Stonis, 2015), capsule with phallus removed (genitalia slide no. 010316205). 129. Same, phallus. 130–131. Dishkeya gouaniae (Diškus & Stonis, 2007), paratype (genitalia slide no. 010316202).
Figs 83–89 in Exceptional diversity of Tischeriidae (Lepidoptera) from a single tropical forest site in Belize, Central America
Figs 83–89. Male genitalia of Astrotischeria spp. (NHMUK). 83. A. selvica Diškus, Carvalho-Filho & Stonis, 2018, capsule with phallus removed, holotype (genitalia slide no. AD920). 84. Same, phallus, paratype (genitalia slide no. AD919). 85. A. casila Diškus & Stonis, 2018, capsule with phallus removed, holotype (genitalia slide no. AD939). 86. Same, phallus. 87. A. furcata Diškus & Stonis, 2018, capsule with phallus removed, holotype (genitalia slide no. AD925). 88. Same, lateral view of capsule. 89. Same, phallus.
Figs 70–77 in Exceptional diversity of Tischeriidae (Lepidoptera) from a single tropical forest site in Belize, Central America
Figs 70–77. Male genitalia of Astrotischeria basilobata Remeikis & Stonis sp. nov. (NHMUK). 70. Capsule, with phallus inside, holotype (genitalia slide no. 010316194). 71. Capsule, with phallus removed, paratype (genitalia slide no. 010316198). 72. Phallus, paratype (genitalia slide no. 010316196). 73–74. Main element and dorsal lobe of valva, with anellus broken, paratype (genitalia slide no. 010316197). 75. Same, uncus and tegumen. 76. Same, chitinized ring of anellus. 77. Same, apex of phallus.
Figs 65–69 in Exceptional diversity of Tischeriidae (Lepidoptera) from a single tropical forest site in Belize, Central America
Figs 65–69. Female genitalia of Astrotischeria scutifera Diškus & Stonis, sp. nov., paratype (genitalia slide no. 010316179, NHMUK). 65. Papillae of ovipositor. 66–68. Details of prela and apophyses. 69. Corpus bursae and coils of ductus spermathecae.
Figs 118–123 in Exceptional diversity of Tischeriidae (Lepidoptera) from a single tropical forest site in Belize, Central America
Figs 118–123. Female genitalia of Paratischeria tubifex Diškus & Stonis sp. nov., paratype (genitalia slide no. 010316173, NHMUK). 118. General view. 119–122. Details. 123. Ovipositor lobes.
Figs 132–138 in Exceptional diversity of Tischeriidae (Lepidoptera) from a single tropical forest site in Belize, Central America
Figs 132–138. Male genitalia of Tischeriidae from Las Cuevas, Belize (NHMUK). 132. Coptotriche pulverea (Walsingham, 1897), capsule with phallus removed (genitalia slide no. 010316203). 133–134. Same, phallus. 135. C. forsteroniae Stonis & Diškus, 2008, capsule with phallus removed, paratype (genitalia slide no. 010316201). 136–138. Same, phallus.
Figs 21–34 in Exceptional diversity of Tischeriidae (Lepidoptera) from a single tropical forest site in Belize, Central America
Figs 21–34. Tischeriidae collected in Las Cuevas, Belize. 21. Paratischeria tubifex sp. nov., holotype (NHMUK 010289272). 22. Same, paratype (010289282). 23. Same, paratype (010289276). 24–25. P. belizensis sp. nov., holotype (010289283). 26–28. P. neotropicana (010289285). 29. Dishkeya gouaniae, paratype (010289320). 30. Coptotriche pulverea (010289324). 31. Same (010289322). 32–34. C. forsteroniae, paratype (010289330).
Figs 35–46 in Exceptional diversity of Tischeriidae (Lepidoptera) from a single tropical forest site in Belize, Central America
Figs 35–46. Male genitalia of Astrotischeria papilloma Diškus & Stonis sp. nov. (NHMUK). 35–36. Dorsal and ventral lobes of uncus, paratype (genitalia slide no. 010316184). 37. Ventral lobes of uncus, paratype (genitalia slide no. 010316185). 38. Dorsal lobes of uncus, holotype (genitalia slide no. 010316182). 39. General view, uncus, holotype (genitalia slide no. 010316182). 40–41. Same, valva. 42. Dorsal lobe of valva, paratype (genitalia slide no. 010316185). 43–44. Anellus and dorsal lobe of valva, holotype (genitalia slide no. 010316182). 45–46. Phallus, paratype (genitalia slide no. 010316185).
Radiocarbon Data from Middle Horizon Sites in the Upper Majes Valley, Arequipa Peru
<p>In 2019, fifteen AMS radiocarbon dates were obtained across four Middle Horizon (AD 600-1000) sites located in the upper Majes Valley in Arequipa, Peru. These include Wari contexts from the sites Pakaytambo and El Tambo, and local road waystations of Santa Rosa II and La Angostura. Dating of both construction and abandonment contexts indicate these sites correspond to the late Middle Horizon, a time of intense connectivity in the prehistoric Andes and Wari state expansionism.</p> <p>This data is a component of the PhD dissertation entitled <em>Networks of Empire: The Role of Infrastructure in Wari State Expansion in Arequipa, Peru (AD 600-1000)</em> by David A. Reid (University of Illinois at Chicago).</p> <p>Funding was provided by the National Science Foundation’s Doctoral Dissertation Research Improvement Award (#1854651).</p>
Data archive for the peer-reviewed journal article "Variability in the mass absorption cross-section of black carbon (BC) aerosols is driven by BC internal mixing state at a central European background site (Melpitz, Germany) in winter""
<p>Data archive for figures accompanying the peer-reviewed journal article "Variability in the mass absorption cross-section of black carbon (BC) aerosols is driven by BC internal mixing state at a central European background site (Melpitz, Germany) in winter". In 2020 this article was accepted for publication in the journal <em>Atmospheric Chemistry and Physics</em>. Data are uploaded in the form of Igor Pro experiment files (.pxp).</p>
Site Colaboradados
<p>O VEÍCULO COLABORATIVO SOBRE TRANSPARÊNCIA E OPEN DATA NO BRASIL.</p> <p>Somos uma iniciativa colaborativa que busca reunir, demonstrar, investigar e monitorar o acesso à informação no Brasil.</p> <p>A ideia surgiu da jornalista de dados <a href="https://juditecypreste.github.io/">Judite Cypreste</a>, que após idas e vindas em diversas bases de dados, decidiu reunir seu conhecimento em um só lugar, o <a href="https://twitter.com/colaboradados"><strong>Colaboradados</strong></a>.</p> <p>Com o uso de ferramentas diversas, nosso objetivo é apenas um: tornar mais democrático o acesso a dados e informação. Para isso, temos o compromisso com a veracidade e o fácil acesso à informação.</p> <p>O <a href="https://twitter.com/colaboradados"><strong>Colaboradados</strong></a> acredita que a informação é a chave para uma sociedade ser mais justa e igualitária.</p> <p>Uma iniciativa de benfeitoria para toda a sociedade.</p> <p><a href="https://colaboradados.com.br/sobre.html">https://colaboradados.com.br/sobre.html</a></p>
Dataset for 'Atmospheric VOC measurements at a High Arctic site: characteristics and source apportionment'
<p>This dataset includes the VOCs (and expanded uncertainties) as well as VOCs (and expanded uncertainties) used in the PMF model as described in 'Pernov, J. B., Bossi, R., Lebourgeois, T., Nøjgaard, J. K., Holzinger, R., Hjorth, J. L., and Skov, H.: Atmospheric VOC measurements at a High Arctic site: characteristics and source apportionment, Atmos. Chem. Phys. Discuss., 2020, 1-36, 10.5194/acp-2020-528, 2020.' </p>
Data for the article: "Molecular Modelling Reveals Eight Novel Druggable Binding Sites in SARS-CoV-2's Spike Protein" by Ilke Ugur and Antoine Marion
<p>This upload contains data related to the article<br> published as a preprint on ChemRxiv with DOI<br> https://doi.org/10.26434/chemrxiv.13292768</p> <p>"Molecular Modelling Reveals Eight Novel Druggable Binding Sites in SARS-CoV-2's Spike Protein"<br> by Ilke Ugur and Antoine Marion (2020)<br> Department of Chemistry, Middle East Technical University, Ankara, Turkey.</p> <p>For further information, please contact:<br> ilkeugur@metu.edu.tr ; amarion@metu.edu.tr</p> <p>The manuscript is currently under peer-review.</p> <p>Content:</p> <p>Library of molecules derived from DrugBank v 5.1.5:<br> - DrugBank_2020_5.1.5/ # All necessary files for the docking and refinement of the library of molecules.<br> -- DB_5.1.5_pH7.4_pdbqt/ ## PDBQT readily usable for docking with AutoDock Vina.<br> -- DB_5.1.5_pH7.4_mol2amber/ ## mol2 files containing assigned GAFF atom types and Gasteiger atomic charges.<br> -- DB_5.1.5_pH7.4_frcmod/ ## frcmod files containing missing molecular mechanics parameters<br> -- dbID_name.dat ## DrugBank ID to generic name dictionary</p> <p>Note: The files were prepared automatically via a series of operations handling openbabel and antechamber.<br> The protonation state of ionizable groups as well as Gasteiger atomic charges were assigned by openbabel for a pH of 7.4<br> mol2 and frcmod files can be used readily via the tleap module of AmberTools to produce topology files.</p> <p><br> Receptor structures:<br> - receptors/ # PDB files for the four structures of the spike protein considered in this work<br> -- CS00ns.pdb ## Closed state after the remodelling of missing loops (PDB ID 6vxx)<br> -- OS00ns.pdb ## Open state after the remodelling of missing loops (PDB ID 6vyb)<br> -- CS25ns.pdb ## Closed state after 25 ns of molecular dynamics in explicit water<br> -- OS25ns.pdb ## Open state after 25 ns of molecular dynamics in explicit water</p> <p>Note: All structures are aligned to CS00ns.pdb and can be converted to pdbqt for docking with AutoDock Vina</p> <p><br> Docking grid centers:<br> - dockingCenters/ # XYZ files containing the coordinates of each docking grid center considered in this work</p> <p>Note: The coordinates are given in the same frame as that of the four structures of the receptor.</p> <p><br> Binding sites:<br> - bindingSites/ # XYZ files with the coordinates of the representative atomic centres<br> # of each binding site identified in this work (A-H).</p> <p>Note: These files can be used to get a clearer picture of the binding sites within the structures<br> of the spike protein shared in the receptors directory.</p> <p><br> Final modelling results:<br> - allData.txt # data for all molecules in the set (approved and investigational)<br> - appData.txt # data for approved molecules only<br> - data.xlsx # data for all molecules in the set (approved and investigational)<br> # as a formatted excel spreadsheet</p> <p>Note: The columns are delimited with semi-colons ";".<br> The files contain the results for the best pose of all approved molecules for which<br> molecular mechanics-based geometry optimization succeeded, regardless of their score.<br> For other molecules, the result of their best pose is reported only for those complexes<br> having MM interaction energy lower or equal to -22.00 kcal/mol.</p> <p><br> Visualization:<br> - bs.pse # pymol session representing the binding sites within the<br> # closed state structure of the spike protein (CS00ns)<br> - pt.pse # pymol session representing the docking grid centres within<br> # closed statestructure of the spike protein (CS00ns)</p> <p>Note: the PSE files should be compatible with version 7.0 of pymol and later</p>
Digital orthoimagery for fractional vegetation cover at site Alpha from Morgan et al Kuiseb River study
<p>Contains high-resolution digital orthoimagery (RGB and NIR) and derived products for site Alpha, from the following manuscript:</p> <p>Morgan et al. (in prep), Spatiotemporal analysis of vegetation cover change in a large ephemeral river: multi-sensor fusion of unmanned aerial vehicle (UAV) and Landsat imagery.</p>
FIG. 9 in Overview of Mitaraka survey: research frame, study site and field protocols
FIG. 9. — Sample size and sorting process according to the sampling type and impact on the quantity and availability of specimens for taxonomic study. Process for broad-spectrum traps: A, automatic light trap with blue LED; B, yield of the trap after one week; C, conditioning of the sample in the field laboratory, and storage in WhirlPack bags with alcohol; D-F, sorting specimens by order and family at the SEAG laboratory (Montjoly, French Guiana); G, preparing packages with glassine envelopes and Eppendorf vials for dissemination among coordinators and/or taxonomic experts; H, typical output of this kind of broad-spectrum trap samples: about 50% fraction may finally be studied (arbitrary estimate). Photos: Julien Touroult.
FIG. 10 in Overview of Mitaraka survey: research frame, study site and field protocols
FIG. 10. — Process for active collecting: A, active collection of cricket (Orthoptera); B, photography of live specimens, important part of the process in some groups; C, preparation and management of the specimens for short term storage in the field laboratory; D, output of the active or selective methods: lower yields than broad-spectrum traps but a larger proportion is effectively studied. Photos: A, C, Xavier Desmier; B, Julien Touroult.
FIG. 12 in Overview of Mitaraka survey: research frame, study site and field protocols
FIG. 12. —Database and portals for entry, consultation and access to data, illustrated by means of a newly described Mitaraka species, Eupromera pascali Dalens, 2016 (Coleoptera, Cerambycidae): A, CardObs database entry interface (https://cardobs.mnhn.fr). The morphospecies name was initially entered as "Eupromera n. sp." in April 2015 and after publication (Feb. 2016), the morphospecies name was replaced by the species name, and the record was completed with publication reference and the collection deposit number; B, INPN French Natural Heritage consultation portal, displaying this species from the Mitaraka dataset (https://inpn.mnhn.fr/espece/cd_nom/814643/tab/rep/GUF); C, public interface to database of the Coleoptera collection (EC) of the MNHN illustrating the holotype and its labels, with full traceability (http://coldb.mnhn.fr/catalognumber/mnhn/ ec/ec7591); D, International GBIF Data Portal displaying the Coleoptera collection (EC) dataset of the MNHN (https://www.gbif.org/occurrence/1413051340).
FIG. 8 in Overview of Mitaraka survey: research frame, study site and field protocols
FIG. 8. — Active and passive substrate sampling: A, B, collection of dead branches infested with saproxylic larvae for "rearing" in emergence chambers (EXL); C, sampling soil litter for invertebrates with Winkler sieve (WS); D, spraying trunks with insecticide to collect small bark-dwelling arthropods that fall on the white sheet at the bottom of the trunk; E, searching for Annelida in soil samples collected with a spade; F, fish sampling in a small stream using rotenone. Photos: A, B, Stéphane Brûlé; C, Benoît Fontaine; D, Jürgen Schmidl; E, F, Xavier Desmier.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.