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1,233
datasets available to search
ShareScore release 0.9.0
Dataset results
1,233 results for “hepatocytes”
Feeding-Induced Discordance: Protein-mRNA Correlation Varies by Zone, Sex, and Fasting in Mouse Hepatocytes
GEO Series GSE291303. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
Two-dimensionally cultured functional hepatocytes generated from human induced pluripotent stem cell-derived hepatic organoids for pharmaceutical research
GEO Series GSE243384. Homo sapiens. 9 samples. Type: Expression profiling by high throughput sequencing.
Effect of prolactin and actinomycin D on gene expression in murine AML12 and Hepa 1-6 hepatocytes
GEO Series GSE57072. Mus musculus. 12 samples. Type: Expression profiling by array.
scRNA-seq analysis of human iPSC derived Hepatocyte organoids (iHOs) [scRNA-seq]
GEO Series GSE247961. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing.
Global transcriptomic analysis of iPSC-derived hepatocytes infected with Ebola virus (EBOV)
GEO Series GSE184639. Homo sapiens. 16 samples. Type: Expression profiling by high throughput sequencing.
Modeling Liver Cancer Molecular and Histological Features by CRISPR Editing of Primary Porcine Hepatocytes
GEO Series GSE311743. Sus scrofa. 45 samples. Type: Expression profiling by high throughput sequencing.
Preclinical efficacy and safety study of encapsulated human proliferating hepatocyte organoids in the treatment of liver failure
GEO Series GSE197897. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
Influence of CPM-dependent sorting on the multi-omics profile of hepatocyte-like cells matured in microscale biochips.
GEO Series GSE179713. Homo sapiens. 13 samples. Type: Expression profiling by high throughput sequencing.
Single cell RNA sequencing of AATD iPSC-derived hepatocytes following Z mutation correction by base-editing
GEO Series GSE164417. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing.
Transcriptome profiling of derived-hepatocyte progenitors from human iPSCs with nanoCAGE - part2 - sequencing data (FASTQ files)
<p>This repository contains raw sequencing data (FASTQ files) produced from Illumina MiSeq run IDs "181114_M00528_0390_000000000-C7P58" (aka "NC_LIMMS3") and "190218_M00528_0406_000000000-CB4HR" (aka "NC_LIMMS4") . Sequencing libraries were prepared following the latest version of the nanoCAGE protocol (Poulain et al., Methods Mol Biol. 2017;1543:57-109. doi: 10.1007/978-1-4939-6716-2_4). They respectively contain a mix of 13 ("NC_LIMMS3") and 24 ("NC_LIMMS4") samples tagged by specific barcode sequences at the 5'-ends (see tables below). The tagmentation step included in the protocol was performed using an equimolar mix of 12 Nextera XT N-series index primers (N701 to N712), therefore "NNNNNNNN" was indicated as index sequence on the Illumina Sample Sheet for the demultiplexing (see tables below). Libraries were sequenced paired-end on Illumina MiSeq system with the MiSeq Reagent Kit v3 (150 cycles: 58 cycles used for READ1, 8 cycles used for the Index, and 84 cycles used for READ2). Genomic alignments (BED files) of paired-end reads on human genome assemblies hg19 and hg38 using the MOIRAI pipeline (Hasegawa et al. BMC Bioinformatics 2014 May 16;15:144. doi: 10.1186/1471-2105-15-144) were deposited at Zenodo under the following Digital Object Identifier: 10.5281/zenodo.2572394.</p> <p><em><strong>"181114_M00528_0390_000000000-C7P58" ("NC_LIMMS3"):</strong></em></p> <p><strong>sample_name group barcode_sequence index_sequence</strong><br> LIMMS43_04_PETRI_S4D7_rep1 iPSC_CLONE_TODAI ACAGAT NNNNNNNN<br> LIMMS44_24_PETRI_S4D7_rep2 iPSC_CLONE_TODAI ATCGTG NNNNNNNN<br> LIMMS45_31_PETRI_S4D7_rep3 iPSC_CLONE_TODAI CACGAT NNNNNNNN<br> LIMMS46_36_PETRI_S4D14_rep1 iPSC_CLONE_TODAI CACTGA NNNNNNNN<br> LIMMS47_46_PETRI_S4D14_rep2 iPSC_CLONE_TODAI CTGACG NNNNNNNN<br> LIMMS48_63_PETRI_S4D14_rep3 iPSC_CLONE_TODAI GAGTGA NNNNNNNN<br> LIMMS49_79_PETRI_CELLARTIS_rep1 iPSC_CLONE_TODAI GTATAC NNNNNNNN<br> LIMMS50_92_PETRI_CELLARTIS_rep2 iPSC_CLONE_TODAI TCGAGC NNNNNNNN<br> LIMMS51_09_PETRI_CELLARTIS_rep3 iPSC_CLONE_TODAI ACATGA NNNNNNNN<br> LIMMS52_21_PETRI_TODAI_rep1 iPSC_CLONE_CELLARTIS ATCATA NNNNNNNN<br> LIMMS53_33_PETRI_TODAI_rep2 iPSC_CLONE_CELLARTIS CACGTG NNNNNNNN<br> LIMMS54_45_PETRI_TODAI_rep3 iPSC_CLONE_CELLARTIS CGATGA NNNNNNNN<br> LIMMS55_57_iPSC_rep1 CONTROL_iPSC GAGATA NNNNNNNN</p> <p><em><strong>"190218_M00528_0406_000000000-CB4HR" ("NC_LIMMS4"):</strong></em></p> <p><strong>sample_name group barcode_sequence index_sequence</strong><br> LIMMS56_04_iPSC_rep4 CONTROL_iPSC ACAGAT NNNNNNNN<br> LIMMS57_24_LSECS_1_11 LSECS_PETRI_MONO ATCGTG NNNNNNNN<br> LIMMS58_31_LSECS_2_11 LSECS_PETRI_MONO CACGAT NNNNNNNN<br> LIMMS59_36_LSECS_3_11 LSECS_PETRI_MONO CACTGA NNNNNNNN<br> LIMMS60_46_LSECS_1-06 LSECS_PETRI_MONO CTGACG NNNNNNNN<br> LIMMS61_63_B3_MONO_11_D3 BC_MONO_D3 GAGTGA NNNNNNNN<br> LIMMS62_79_B9_CO_10_D14 BC_CO_D14 GTATAC NNNNNNNN<br> LIMMS63_92_B13_CO_11_D3 BC_CO_D3 TCGAGC NNNNNNNN<br> LIMMS64_09_P2_10_D14 PETRI_MONO ACATGA NNNNNNNN<br> LIMMS65_21_P3_10_D14 PETRI_MONO ATCATA NNNNNNNN<br> LIMMS66_33_P3_11_D14 PETRI_MONO CACGTG NNNNNNNN<br> LIMMS67_45_B1_MONO_10_D14 BC_MONO_D14 CGATGA NNNNNNNN<br> LIMMS68_57_B2_MONO_10_D14 BC_MONO_D14 GAGATA NNNNNNNN<br> LIMMS69_69_B1_MONO_11_D14 BC_MONO_D14 GCTCTC NNNNNNNN<br> LIMMS70_81_B2_MONO_11_D14 BC_MONO_D14 GTATGA NNNNNNNN<br> LIMMS71_93_B6_CO_10_D14 BC_CO_D14 TCGATA NNNNNNNN<br> LIMMS72_11_B7_CO_10_D14 BC_CO_D14 AGTAGC NNNNNNNN<br> LIMMS73_23_B8_CO_10_D14 BC_CO_D14 ATCGCA NNNNNNNN<br> LIMMS74_35_B9_CO_11_D3 BC_CO_D3 CACTCT NNNNNNNN<br> LIMMS75_47_B11_CO_11_D14 BC_CO_D14 CTGAGC NNNNNNNN<br> LIMMS76_59_B12_CO_11_D14 BC_CO_D14 GAGCGT NNNNNNNN<br> LIMMS77_71_B14_CO_11_D14 BC_CO_D14 GCTGCA NNNNNNNN<br> LIMMS78_83_B15_CO_11_D14 BC_CO_D14 TATAGC NNNNNNNN<br> LIMMS79_95_iPSC_rep1_4 CONTROL_iPSC TCGCGT NNNNNNNN</p>
Transcriptomics of mouse hepatocyte maturation and human hepatic reprogramming
GEO Series GSE169702. Mus musculus; Homo sapiens. 15 samples. Type: Expression profiling by high throughput sequencing.
Distinct distributions of histone marks shape cell identities of murine hepatic progenitors and adult hepatocytes
GEO Series GSE54029. Mus musculus. 2 samples. Type: Expression profiling by array.
Examination of gene expression changes after exposure to 29 chemicals in rat primary hepatocytes
GEO Series GSE147379. Rattus norvegicus. 192 samples. Type: Expression profiling by high throughput sequencing.
Epigenetic profiling of hepatocyte, reprogrammed hepatocyte, and biliary cells
GEO Series GSE156946. Mus musculus. 15 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Priming adult human hepatocytes as organoids for liver tissue engineering
GEO Series GSE207434. Homo sapiens. 2 samples. Type: Expression profiling by high throughput sequencing.
Identification of hepatocyte-primed biliary epithelial cells in the homeostatic liver by in vivo lentiviral gene transfer to mice and non-human primates [1]
GEO Series GSE232369. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
Global transcriptomic analysis of hepatocyte cells infected with Ebola virus (EBOV)
GEO Series GSE184638. Homo sapiens. 32 samples. Type: Expression profiling by high throughput sequencing.
Early and late changes in gene and miRNA expression after hepatitis B or C infection in human hepatocyte chimeric mice [tissue_mRNA]
GEO Series GSE52752. Homo sapiens. 51 samples. Type: Expression profiling by array.
MAPK1 mediates C/EBPβ phosphorylation to promote maturation and inhibit EMT process in hESC-derived hepatocytes [RNA-seq]
GEO Series GSE304637. Homo sapiens. 18 samples. Type: Expression profiling by high throughput sequencing.
Gene expression and epigenetic alterations in human hepatocytes treated with low doses of chemical carcinogens
GEO Series GSE127791. Homo sapiens. 21 samples. Type: Expression profiling by array.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.