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2,185 results for “integrated taxonomy”
Figure 10 in Revealing the cryptic diversity of the widespread and poorly known South American blind snake genus Amerotyphlops (Typhlopidae: Scolecophidia) through integrative taxonomy
Figure 10. Geographical distribution of nine species belonging to the genus Amerotyphlops from South America. A, zoomed map of species distributed in the north-eastern Brazil; B, zoomed map of four new species described in this work. Symbols: A. arenensis (black pentagons); A. amoipira (black diamonds); A. brongersmianus (black circles); A. yonenagae (black squares); A. pauciquamus (black inverted triangles); A. martis sp. nov. (black star); A. montanum sp. nov. (black triangles); A. illusorium sp. nov. (black cross); Amerotyphlops caetanoi sp. nov. (black asterisk).
Fi g ur e 1 5. B o x p l o t o f p a t r i s t i c d i s t a n c e a m o n g Typhlopinae (Amerotyphlops, Typhlops, Antilotyphlops and Cubatyphlops). in Revealing the cryptic diversity of the widespread and poorly known South American blind snake genus Amerotyphlops (Typhlopidae: Scolecophidia) through integrative taxonomy
Fi g ur e 1 5. B o x p l o t o f p a t r i s t i c d i s t a n c e a m o n g Typhlopinae (Amerotyphlops, Typhlops, Antilotyphlops and Cubatyphlops).
Figure 1 in Revealing the cryptic diversity of the widespread and poorly known South American blind snake genus Amerotyphlops (Typhlopidae: Scolecophidia) through integrative taxonomy
Figure 1. Maximum likelihood tree of Typhlopoidea zoomed into the South American radiation of Amerotyphlops. The numbers on the branch represent bootstrap values> 75%. Letter A indicates the species of northern Brazil (Clade A), and letter B indicates species of the Amerotyphlops brongersmianus species complex (Clade B). Colour on branch represents the cryptic species Amerotyphlops sp. 1 (light blue), Amerotyphlops sp. 2 (dark pink), Amerotyphlops sp. 3 (green), and Amerotyphlops sp. 4 (red).
Figure 4 in Revealing the cryptic diversity of the widespread and poorly known South American blind snake genus Amerotyphlops (Typhlopidae: Scolecophidia) through integrative taxonomy
Figure 4. Holotype of Amerotyphlops caetanoi sp. nov. (MZUSP S-023380). Head in left lateral (A), dorsal (B) and ventral (C) views. TTL = 176 mm. Scale bar equal to 5 mm.
Figure 11 in Revealing the cryptic diversity of the widespread and poorly known South American blind snake genus Amerotyphlops (Typhlopidae: Scolecophidia) through integrative taxonomy
Figure 11. Holotype of Amerotyphlops montanum sp. nov. (MZUSP 20065). Head in left lateral (A), dorsal (B) and ventral (C) views. TTL = 216 mm. Scale bar equal to 5 mm.
Figure 12 in Revealing the cryptic diversity of the widespread and poorly known South American blind snake genus Amerotyphlops (Typhlopidae: Scolecophidia) through integrative taxonomy
Figure 12. Holotype of Amerotyphlops martis sp. nov. (MNRJ 18744). Head in left lateral (A), dorsal (B) and ventral (C) views. TTL = 157 mm. Scale bar equal to 5 mm.
Figure 9 in Revealing the cryptic diversity of the widespread and poorly known South American blind snake genus Amerotyphlops (Typhlopidae: Scolecophidia) through integrative taxonomy
Figure 9. Three-dimensional reconstruction of the anterior region of the left mandible in Amerotyphlops species based on HRXCT data. A, Amerotyphlops caetanoi sp. nov. (MZUSP S-023380); B, Amerotyphlops montanum sp. nov. (MZUSP 20065). Insert shows a lateral profile of the skull of A. brongersmianus presenting in red the position of the detailed region. Scales bars equal to 5 mm. Abbreviations: cb, compound bone; co, coronoid; d, dentary; sp, splenial.
FIGURE 5 in Integrative taxonomy of a new species of Rhyacodrilus (Annelida: Clitellata: Rhyacodrilinae) from Tibet Plateau rivers, with a preliminary assessment of its phylogenetic position
FIGURE 5. Phylogenetic tree generated by Bayesian Inference based on the data of the nuclear ITS2. Posterior probabilities> 0.5 are indicated in front of the nodes. The grey branches indicate outgroup. The red font indicates the new species. Nai, Naidinae; Rhy, Rhyacodrilinae; Pha, Phallodrilinae; Tub, Tubificinae; Lim, Limnodriloidinae; Opi, Opistocystinae; Pri, Pristininae.
FIGURE 4 in Integrative taxonomy of a new species of Rhyacodrilus (Annelida: Clitellata: Rhyacodrilinae) from Tibet Plateau rivers, with a preliminary assessment of its phylogenetic position
FIGURE 4. Phylogenetic tree generated by Bayesian Inference based on concatenated data of three loci (16S rDNA+COI+ITS2). Posterior probabilities> 0.5 are indicated in front of the nodes. Grey branches indicate outgroups. The red font indicates the new species. Nai, Naidinae; Rhy, Rhyacodrilinae; Pha, Phallodrilinae; Tub, Tubificinae; Lim, Limnodriloidinae; Opi, Opistocystinae; Pri, Pristininae. The subfamilial position of Heronidrilus and Bothrioneurum in Rhyacodrilinae is questionable and therefore put in quotation marks.
FIGURE 1. Rhyacodrilus tangulaensis n in Integrative taxonomy of a new species of Rhyacodrilus (Annelida: Clitellata: Rhyacodrilinae) from Tibet Plateau rivers, with a preliminary assessment of its phylogenetic position
FIGURE 1. Rhyacodrilus tangulaensis n. sp. A. Ventral chaetae. B. Spermathecal chaeta. C. Ventral view of male genitalia in segments X–XI. pch, penial chaetae; ad, atrial duct; at, atrium; pr, prostate gland; vd, vas deferens; spa, spermathecal ampulla; spp, spermathecal pore; sch, spermathecal chaeta.
FIGURE 2. Rhyacodrilus tangulaensis n in Integrative taxonomy of a new species of Rhyacodrilus (Annelida: Clitellata: Rhyacodrilinae) from Tibet Plateau rivers, with a preliminary assessment of its phylogenetic position
FIGURE 2. Rhyacodrilus tangulaensis n. sp. A. Ventral chaetae in anteclitellar region (SEM). B. Dorsal chaetae in anteclitellar region (SEM). C. Penial chaetae, distal tips focused. D. Modified chaeta in X. E. Spermatheca. F. Distal end of atrium. G. Atrial duct.
Figure 6 in Cloudy with a chance of speciation: integrative taxonomy reveals extraordinary divergence within a Mesoamerican cloud forest bird
Figure 6. Results of tests for strong niche divergence on multivariate niche axis in relationship to the phylogeny. Boxes show whether each niche axis was more divergent than background divergence (diverged), more similar than background divergence (conserved), or was similar to background divergence and therefore failed to reject the null hypothesis (null). Percentages indicate the amount of variation explained by that axis.
Figure 5 in Cloudy with a chance of speciation: integrative taxonomy reveals extraordinary divergence within a Mesoamerican cloud forest bird
Figure 5. Phylogenies of Aphelocoma unicolor based on mitochondrial DNA and ultraconserved elements (UCEs). For the Bayesian time-calibrated mitochondrial DNA phylogeny generated in BEAST, the mean estimated split dates are provided on the nodes, with the 95% highest probability density shown below in square brackets. For both phylogenies, nodes with perfect support are shown with black dots.
Figure 4 in Cloudy with a chance of speciation: integrative taxonomy reveals extraordinary divergence within a Mesoamerican cloud forest bird
Figure 4. Results of a discriminant function (DF) analysis and normal mixture models on all morphological and plumage traits. A, differences among all five Aphelocoma unicolor subspecies in the first two DF axes. B, differences between only the A. u. unicolor and A. u. griscomi subspecies in the third and fourth DF axes. C, D, results of normal mixture modelling to determine the objective number of phenotypic clusters among individuals west (C) and east (D) of the Isthmus of Tehuantepec, with inset showing the assignment of individuals to each cluster with respect to their a priori subspecies assignment.
Figure 3 in Cloudy with a chance of speciation: integrative taxonomy reveals extraordinary divergence within a Mesoamerican cloud forest bird
Figure 3. Scatterplot of hue and colour saturation (chroma) for the five Aphelocoma unicolor subspecies.
Figure 2 in Cloudy with a chance of speciation: integrative taxonomy reveals extraordinary divergence within a Mesoamerican cloud forest bird
Figure 2. Differences among the five Aphelocoma unicolor subspecies for six morphological traits (measured in millimetres).
Figure 1. A, a in Cloudy with a chance of speciation: integrative taxonomy reveals extraordinary divergence within a Mesoamerican cloud forest bird
Figure 1. A, a unicolored jay (Aphelocoma unicolor unicolor) from Reserva de Biósfera Sierra de las Minas, Guatemala (Macauley Library ML85163771, photograph by Daniel Aldana). B, specimens representing A. u. guerrerensis (MLZ 45972), A. u. concolor (NMNH A9096), A. u. oaxacae (MLZ 33558), A. u. unicolor (MLZ 45360) and A. u. griscomi (AMNH 327521). C, distribution map of A. unicolor subspecies drawn from eBird observations.
FIGURE 11 in Integrative taxonomy reveals two new narrowly-endemic crayfish species (Decapoda: Cambaridae) from the Yadkin River Basin in western North Carolina, USA
FIGURE 11. Hypothesized passive margin escarpment evolution (PMEE) time series of the Stony Fork watershed (figure concept adapted from Prince et al. 2010). i) The initial Eastern Continental Divide (ECD) demarcated the higher-gradient, moderate elevation Yadkin River basin and moderate-gradient, higher elevation New River basin; the basins did not share an ancestral Cambarus species. ii) Erosion along the higher-gradient eastern slope of the ECD (dotted line) captured the headwaters of a historic New River Basin stream, bringing ancestral C. aff. robustus into the Yadkin basin and forcing a downstream retreat of ancestral C. species C. iii) Additional erosional events (dotted lines) pushed the ECD further inland and demarcated extant interior basin species from Atlantic Slope species; Cambarus lapidosus is isolated from C. aff. robustus in the Stony Fork headwaters by the extant ECD and from downstream C. species C by a natural waterfall barrier.
FIGURE 4 in Integrative taxonomy reveals two new narrowly-endemic crayfish species (Decapoda: Cambaridae) from the Yadkin River Basin in western North Carolina, USA
FIGURE 4. Cambarus lapidosus, holotype (NCSM 90222) in life (photo credit: Michael A. Perkins, NCWRC).
FIGURE 7 in Integrative taxonomy reveals two new narrowly-endemic crayfish species (Decapoda: Cambaridae) from the Yadkin River Basin in western North Carolina, USA
FIGURE 7. Cambarus burchfielae, new species. (A.) Lateral view of carapace; (B.) dorsal view of carapace; (C.) right antennal scale; (D.) dorsal view of carpus and chela; (E.) epistome; (F.) lateral and (G.) mesial view of form I gonopod; (H.) lateral and (I.) mesial view of form II gonopod; (J.) annulus ventralis. A–E, F–G from holotype; H–I from morphotype; J from allotype.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.