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Supplementary material 1 from: Schulz AN, Mech AM, Allen CR, Ayres MP, Gandhi KJK, Gurevitch J, Havill NP, Herms DA, Hufbauer RA, Liebhold AM, Raffa KF, Raupp MJ, Thomas KA, Tobin PC, Marsico TD (2020) The impact is in the details: evaluating a standardized protocol and scale for determining non-native insect impact. NeoBiota 55: 61-83. https://doi.org/10.3897/neobiota.55.38981
Supplementary tables and figures
IO Islamic 2494. Tawârîkh-i- Ḥaidarî, A Detailed History of Ḥaidar 'Alîkhân
<p>IO Islamic 2494. Tawârîkh-i- Ḥaidarî, A Detailed History of Ḥaidar ‘Alîkhân</p>
A Detailed View of the Circumstellar Environment and Disk of the Forming O-star AFGL 4176 - Online Data
<p>These data accompany the ApJ paper Johnston et al. (2020), "A Detailed View of the Circumstellar Environment and Disk of the Forming O-star AFGL 4176" </p> <p>ArXiv link: <a href="https://arxiv.org/abs/2004.13739">https://arxiv.org/abs/2004.13739</a></p> <p>Abstract: We present a detailed analysis of the disk and circumstellar environment of the forming O-type star AFGL 4176 mm1, placing results from the Atacama Large Millimeter/submillimeter Array (ALMA) into context with multiwavelength data. With ALMA, we detect seventeen 1.2 mm continuum sources within 5" (21,000 au) of AFGL 4176 mm1. We find that mm1 has a spectral index of 3.4±0.2 across the ALMA band, with >87% of its 1.2 mm continuum emission from dust. The source mm2, projected 4200 au from mm1, may be a companion or a blueshifted knot in a jet. We also explore the morphological differences between the molecular lines detected with ALMA, finding 203 lines from 25 molecules, which we categorize into several morphological types. Our results show that AFGL 4176 mm1 provides an example of a forming O-star with a large and chemically complex disk, which is mainly traced by nitrogen-bearing molecules. Lines that show strong emission on the blueshifted side of the disk are predominantly oxygen-bearing, which we suggest are tracing a disk accretion shock. The molecules C^{34}S, H2CS and CH3CCN trace a slow wide-angle wind or dense structures in the outflow cavity walls. With the Australia Telescope Compact Array (ATCA), we detect a compact continuum source (<2000 x 760 au) at 1.2 cm, associated with mm1, of which >96% is from ionized gas. The ATCA NH3(1,1) and (2,2) emission traces a large-scale (r ~ 0.5 pc) rotating toroid with the disk source mm1 in the blueshifted part of this structure offset to the northwest.</p> <p>A list and short description of the files in this Zenodo dataset are given in the file <a href="https://zenodo.org/api/files/9c854b6e-4b23-4c32-9322-005b82b9eaf8/README_Johnstonetal2020.txt">README_Johnstonetal2020.txt</a>.</p>
Survey of India Topo Sheet 46N7 1970 1st edition, detail.
<p>Survey of India Topo Sheet 46N7 1970 1st Edition, detail. © Survey of India.</p>
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Drawing uploaded to scidraw.io on: 15 November 2019
Figure 2. Photographs detailing a in A preliminary study of nest structure and composition of the weaver ant Polyrhachis (Cyrtomyrma) delecta (Hymenoptera: Formicidae)
Figure 2. Photographs detailing a silk support structure ('girder') spanning a chamber within a nest (A), a cross-section of the 'girder' (B), a view of the outside of Nest 1 showing workers on sections of the folded leaf with an area of visible carton in the bottom right (C), examples of an alate queen (top), male (middle) and worker (bottom) of Polyrhachis delecta weaver ants (D), and examples of the various brood stages including a pupa (left) and variously sized larvae (middle to right) (E).
Data from: Discovery of a new ant species of the elusive termitophilous genus Metapone in Singapore (Hymenoptera: Formicidae: Myrmicinae), with first detailed description of male genitalia of the genus
A new species of the rare ant genus Metapone – Metapone murphyi – is described based on aged museum material: a single nest series (workers, queens and males) collected from a decayed coconut (tree) stump on Pulau Sakra – previously an offshore island south of mainland Singapore. Workers can be distinguished from other named congeners mainly by the following characters: 1) subpetiolar lamella subrectangular; 2) short subpetiolar edge and roundly obtuse subpetiolar angle; 3) outer margin of posterior subpetiolar face forming a continuous, U-shaped, translucent, laminate carina; 4) subtrapezoidal petiole in dorsal view with extended blunt tooth-like posterolateral corners. Detailed description and illustrations of the male genitalia are given for the first time in the genus. The key to Asian species of Metapone is updated to include the new species.
Replication data for High-impact details of play and movements with higher trunk acceleration in female basketball game
<p>This study aimed to identify the high-impact details of play and movements with higher acceleration and their frequency during a female basketball match. Trunk acceleration was measured during a simulated basketball game with eight female players. We categorized the various actions as details of play and movements generated at >6 and 8G resultant accelerations using a video recording and an accelerometer attached to the players’ trunk. The frequency and ratio of the details of play and movements about all detected movements were calculated. A total of 1062 and 223 play actions were detected for the resultant acceleration thresholds of >6 and 8G, respectively. For these acceleration thresholds, in terms of details of play, positioning on the half-court was the most frequently observed (29.6% and 23.8%, respectively). In the terms of movements, deceleration was the most frequently detected movement (21.5% and 23.3%, respectively), followed by landing (7.6 and 15.7%, respectively). The results also showed that characteristics of movements or playing style and position of play might have an effect on acceleration patterns during a basketball game. Monitoring the frequency and intensity of these movements and details of play can help to quantify the biomechanical load experienced by basketball players.</p>
Exploring human splenic red pulp vasculature in virtual reality. Details of sheathed capillaries and the open capillary network. Supplementary material
<p>Supplementary files demonstrate our data in an interactive application. Please download und unpack the file, then launch file "start.bat". Please note that loading the original images takes some time. If you have a Steam VR headset, it is detected and used automatically.</p> <ol> <li><strong>Supplementary file 1 </strong><br> Localization of arteries and arterioles in ROI 4.<br> ROI 4 with all endothelia and some periarterial fibroblasts colored blue (CD34), smooth muscle alpha-actin (SMA) colored white and capillary sheaths depicted in green (CD271). Most arteries and arterioles can be localized by white color. White appears in a vertex of the blue reconstruction of CD34 staining, if a surface reconstructed for SMA labelling is closer than 8.75 µm to this vertex. Capillary sheaths connected to the selected arterioles (marked red in Suppl. file 2) are green and non-connected sheaths fed by other arterioles are dark green (CD271).</li> <li><strong>Supplementary file 2</strong><br> Relation of capillary sheaths to terminal arterioles in ROI4.<br> ROI 4 with all endothelia and some periarterial fibroblasts colored blue (CD34), selected terminal artery and terminal arterioles manually labelled red and capillary sheaths connected to the labelled arterioles in green (CD271). Non-connected sheaths fed by other arterioles are dark green (CD271). Follicular dendritic cells (FDCs) in follicles are light green (CD271). This file corresponds to Fig. 3 and to Suppl. Video 1-3.</li> <li><strong>Supplementary file 3</strong><br> Relation of capillary sheaths to terminal arterioles in ROI 2.<br> ROI 2 with all endothelia and some periarterial fibroblasts colored blue (CD34), selected terminal artery and terminal arterioles manually labelled red and capillary sheaths connected to the labelled arterioles in green (CD271). Non-connected sheaths fed by other arterioles are dark green (CD271). FDCs in follicles are light green (CD271). This file corresponds to Fig. 4a,b.</li> <li><strong>Supplementary file 4</strong><br> Relation of capillary sheaths to terminal arterioles in ROI 1.<br> ROI 1 with all endothelia and some periarterial fibroblasts colored blue (CD34), selected terminal artery and terminal arterioles manually labelled red and capillary sheaths connected to the labelled arterioles in green (CD271). Non-connected sheaths fed by other arterioles are dark green (CD271). FDCs in follicles are light green (CD271)</li> <li><strong>Supplementary file 5</strong><br> White pulp in 3D (ROI 3).<br> ROI 3 with all endothelia and some periarterial fibroblasts colored blue (CD34) and capillary sheaths in green (CD271). FDCs in follicles are light green (CD271). Arteries and terminal arterioles were not labelled.</li> <li><strong>Supplementary file 6 </strong><br> Sheathed capillaries exhibit short open-ended side branches.<br> ROI 2 with all endothelia and some periarterial fibroblasts colored blue (CD34) and with selected terminal artery and terminal arterioles labelled light blue. Capillary sheaths connected to the selected arterioles are green (CD271) and unconnected sheaths are dark green (CD271). The open-ended side branches of the selected sheathed capillaries were manually labelled red and are visualized in their entire length. This file corresponds to Fig. 4c.</li> <li><strong>Supplementary file 7</strong><br> Terminal arterioles may have a few unsheathed connections to the red pulp capillary network.<br> ROI 2 with all endothelia and some periarterial fibroblasts colored blue (CD34) and with selected terminal artery and terminal arterioles labelled light blue. Capillary sheaths connected to the selected arterioles are green (CD271) and unconnected sheaths are dark green (CD271). Connections from a terminal arteriole to the red pulp capillary network lacking sheaths were manually labelled red. A part of the capillary network after the connection is colored yellow. This file corresponds to Figs. 4d,e.</li> <li><strong>Supplementary file 8</strong><br> B-lymphocytes accumulate around terminal arteries and in/around capillary sheaths.<br> Lower part of ROI 2 with selected terminal artery and terminal arterioles colored blue and connected capillary sheaths in green (CD271). B-lymphocytes were digitally reduced in number and automatically labelled red (CD20). The B-cells accumulate around a terminal artery and around (and inside) capillary sheaths. This file corresponds to Fig. 6 and to Suppl. Video 4.</li> <li><strong>Supplementary file 9</strong><br> Reduction of B-lymphocytes is inevitable for visualization.<br> ROI 2 showing Suppl. file 8 integrated into the entire ROI 2. A large number of B-lymphocytes is present in the red pulp of ROI 2 (CD20 visualized in white). These cells are self-occluding and necessitate reducing B-lymphocytes as shown in Suppl. Fig. 8 to highlight accumulations.</li> <li><strong>Supplementary file 10</strong><br> Red pulp venule with potential connections to capillary network.<br> A red pulp venule with capillaries in ROI 1. Capillary and venous endothelium is shown in light blue (CD34). A part of a red pulp venule with potential contributing capillaries (CD34, blue) was manually selected in addition to a terminal arteriole (light red). The capillary sheaths connected with this arteriole are green (CD271). Non-connected sheaths are dark green (CD 271) and FDCs in follicles are light green (CD271). Capillaries from the red pulp network, which appear to be connected to the venule were manually colored red. Two of the red capillaries seem to originate from a sheathed capillary. This file corresponds to Fig. 5a-d and to Suppl. Video 5.</li> </ol> <p>Bounding boxes for all files have a side length of 1 mm with exception of Suppl. File 8 which is 800 (b) x 620 (h) x 614 (d) µm.</p> <p>As for videos, each video is in three quality settings:</p> <ul> <li>..._h264_8bit.mov is the most generic H.264 HQ setting. Should play everywhere, also with QuickTime.</li> <li>..._h265_10bit.mov is the 10 bit video version, encoded with HEVC encoder. Should be the same or higher quality with less size. Might not play everywhere.</li> <li>..._h264_8bit_small.mov is the H.264 LQ setting with much lower resolution, use this if your download bandwidth is limited.</li> </ul> <p>Now, there are 5 videos to supplement the submission:</p> <ol> <li><a href="https://zenodo.org/record/3993324/files/suppl%20video%201%20-%20sheath%20video%20r4%20full%20h264%208bit.mov">suppl video 1 - sheath r4 full .</a>.. shows the region ROI4 with full vasculature, similar to Fig. 3 of the manuscript,</li> <li><a href="https://zenodo.org/record/3993324/files/suppl%20video%202%20-%20sheath%20video%20r4%20select%20h264%208bit.mov">suppl video 2 - sheath r4 select .</a>... shows only the selection of the vasculature from ROI4, similar to Fig. 3 of the manuscript,</li> <li><a href="https://zenodo.org/record/3993324/files/suppl%20video%203%20-%20sheath%20video%20r4%20clipping%20h264%208bit.mov">suppl video 3 - sheath r4 clipping .</a>... showcases the front plane clipping technique we used for diagnostics in VR. This demonstrates the contents of Fig. 8 in dynamics.</li> <li><a href="https://zenodo.org/record/3993324/files/suppl%20video%204%20-%20sheath%20video%20r2%20bcell%20h264%208bit.mov">suppl video 4 - sheath bcell .</a>.. shows the selection of the B-cells to supplement Fig. 6 in the manuscript.</li> <li><a href="https://zenodo.org/record/3993324/files/suppl%20video%205%20-%20sheath%20video%20r1%20vene%20h264%208bit.mov">suppl video 5 - sheath r1 vene .</a>.. shows a red pulp venule and its apparent connections, this supplements Fig. 5 of the manuscript.</li> </ol>
FIGURE 6 in A detailed taxonomic study on two new and one known species of Anaplectus De Coninck & Schuurmans Stekhoven, 1933 (Nematoda: Plectidae)
FIGURE 6. Map showing distribution of species of Anaplectus worldwide.
FIGURE 4 in Dating and publication of the Encyclopédie Méthodique (1782- 1832), with special reference to the parts of the Histoire Naturelle and details on the Histoire Naturelle des Insectes
FIGURE 4. Title page of volume 4 of the Histoire Naturelle. Insectes. Laporte separate edition.
FIGURE 2 in Dating and publication of the Encyclopédie Méthodique (1782- 1832), with special reference to the parts of the Histoire Naturelle and details on the Histoire Naturelle des Insectes
FIGURE 2. Timeline of production for all the dictionnaires of the EM.
FIGURE 16. Adult male Stigmacoccus paranaensis Foldi. For lettering, see Figs 14 & 15 in A taxonomic review of the Margarodoid genus Stigmacoccus Hempel (Hemiptera: Sternorrhyncha: Coccoidea: Stigmacoccidae), with some details on their biology
FIGURE 16. Adult male Stigmacoccus paranaensis Foldi. For lettering, see Figs 14 & 15.
FIGURE 13. 1 in A taxonomic review of the Margarodoid genus Stigmacoccus Hempel (Hemiptera: Sternorrhyncha: Coccoidea: Stigmacoccidae), with some details on their biology
FIGURE 13. 1st-instar nymph of Stigmacoccus paranaensis Foldi. For letters, see Fig. 11.
FIGURE 9 in A taxonomic review of the Margarodoid genus Stigmacoccus Hempel (Hemiptera: Sternorrhyncha: Coccoidea: Stigmacoccidae), with some details on their biology
FIGURE 9. Cyst stage of Stigmacoccus species B, from Colombia. For lettering, see Fig. 5.
FIGURE 10 in A taxonomic review of the Margarodoid genus Stigmacoccus Hempel (Hemiptera: Sternorrhyncha: Coccoidea: Stigmacoccidae), with some details on their biology
FIGURE 10. Cyst stage of Stigmacoccus species C, from Mexico. For lettering, see Fig. 5.
FIGURE 12. 1 in A taxonomic review of the Margarodoid genus Stigmacoccus Hempel (Hemiptera: Sternorrhyncha: Coccoidea: Stigmacoccidae), with some details on their biology
FIGURE 12. 1st-instar nymph of Stigmacoccus garmilleri Foldi. For letters, see Fig. 11.
FIGURE 7 in A taxonomic review of the Margarodoid genus Stigmacoccus Hempel (Hemiptera: Sternorrhyncha: Coccoidea: Stigmacoccidae), with some details on their biology
FIGURE 7. Cyst stage of Stigmacoccus paranaensis Foldi. For lettering, see Fig. 5.
FIGURE 6 in A taxonomic review of the Margarodoid genus Stigmacoccus Hempel (Hemiptera: Sternorrhyncha: Coccoidea: Stigmacoccidae), with some details on their biology
FIGURE 6. Cyst stage of Stigmacoccus garmilleri Foldi. For lettering, see Fig. 5.
FIGURE 8 in A taxonomic review of the Margarodoid genus Stigmacoccus Hempel (Hemiptera: Sternorrhyncha: Coccoidea: Stigmacoccidae), with some details on their biology
FIGURE 8. Cyst stage of Stigmacoccus species A, from Dominican Republic. For lettering, see Fig. 5.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.