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zenodo28/100

Figure 2 from: Brambach F, Coode M, Biagioni S, Culmsee H (2016) Elaeocarpus firdausii (Elaeocarpaceae), a new species from tropical mountain forests of Sulawesi. PhytoKeys 62: 1-14. https://doi.org/10.3897/phytokeys.62.7548

Figure 2 - Elaeocarpus firdausii. a branch with leaves and flowers (note red leaf-galls) b bark slash c branch apex with inflorescence d underside of mature leaf e flowers with golden disc and grey anthers f reddish-brown young leaves g green young leaves h conspicuous reticulation on underside of mature leaf i clustered arrangement of leaves; j young twig with stipules k flowers on apically bent pedicels. a, c, e, g, i, and k from the type collection (Brambach et al. 1953); b, d, f, h, and j from Brambach et al. 2041.

opencc-by-4.0Mar 2016View details →
zenodo28/100

Multiple stages of tree seedling recruitment are altered in tropical forests degraded by selective logging

<b>Description: </b><p>Tree locations, tree size measurements, seed trap data, seed germination and seedling survival data</p><p><b>Project: </b>This dataset was collected as part of the following SAFE research project: <a href="https://www.safeproject.net/projects/project_view/132"><b>The impact of logging on density-dependent predation and recruitment of dipterocarp seeds during a mast-fruiting year</b></a></p><p><b>XML metadata: </b>GEMINI compliant metadata for this dataset is available <a href="https://www.safeproject.net/datasets/xml_metadata?id=221">here</a></p><p><b>Files: </b>This consists of 1 file: Pillay_R_et_al_Dryobalanops_lanceolata_AllData.xlsx</p><p><b>Pillay_R_et_al_Dryobalanops_lanceolata_AllData.xlsx</b></p><p>This file contains dataset metadata and 4 data tables:</p><ol><li><p><b>TreeSize</b> (described in worksheet TreeSize)</p><p>Description: Size measurements of experimental trees</p><p>Number of fields: 8</p><p>Number of data rows: 13</p><p>Fields: </p><ul><li><b>ftype</b>: Forest Type (Field type: Categorical)</li><li><b>tree.id</b>: Unique ID of experimental trees (Field type: Location)</li><li><b>Species</b>: Species identity (Field type: Taxa)</li><li><b>dbh_cm</b>: Tree DBH (Field type: Numeric)</li><li><b>measured_height_m</b>: Measured tree height (Field type: Numeric)</li><li><b>researcher_height_m</b>: Researcher height (Field type: Numeric)</li><li><b>height_m</b>: Tree height (measured height + researcher height) (Field type: Numeric)</li><li><b>crown_diameter_m</b>: Tree crown diameter (Field type: Numeric)</li></ul></li><li><p><b>SeedfallTrapByDist</b> (described in worksheet SeedfallTrapByDist)</p><p>Description: Seed trap data</p><p>Number of fields: 9</p><p>Number of data rows: 312</p><p>Fields: </p><ul><li><b>ftype</b>: Forest Type (Field type: Categorical)</li><li><b>tree.id</b>: Unique ID of experimental trees (Field type: Location)</li><li><b>Species</b>: Species identity (Field type: Taxa)</li><li><b>transect</b>: Unique ID of transects around each experimental tree (Field type: ID)</li><li><b>bearing</b>: Transect compass bearing (Field type: Numeric)</li><li><b>trap</b>: Unique ID of seed traps along transects (Field type: ID)</li><li><b>distance</b>: Distance of seed trap along transect (Field type: Numeric)</li><li><b>PC1</b>: Principal Components Analysis variable used as a surrogate for tree size (Field type: Numeric)</li><li><b>seeds</b>: Total number of seeds that fell into each seed trap over the study period (Field type: Numeric)</li></ul></li><li><p><b>NaturalPlotsSingleRec-Seed</b> (described in worksheet NaturalPlotsSingleRec-Seed)</p><p>Description: Seed germination and seedling survival data in natural plots</p><p>Number of fields: 23</p><p>Number of data rows: 2069</p><p>Fields: </p><ul><li><b>FTYPE</b>: Forest Type (Field type: Categorical)</li><li><b>TREE.ID</b>: Unique ID of experimental trees (Field type: Location)</li><li><b>Species</b>: Species identity (Field type: Taxa)</li><li><b>TRANSECT</b>: Unique ID of transects around each experimental tree (Field type: ID)</li><li><b>BEARING</b>: Transect compass bearing (Field type: Numeric)</li><li><b>PLOT</b>: Unique ID of natural plots along transects (Field type: ID)</li><li><b>DISTANCE</b>: Distance of natural plot along transect (Field type: Numeric)</li><li><b>SEED.ID.FIELD</b>: Unique identification number assigned to each seed in the field (Field type: ID)</li><li><b>SEED.ID.ANALYSES</b>: For statistical analyses, a continuous numbering scheme was followed with respect to the unique identification number assiged to each seed. This facilitated calculating summary statistics and overall analyses. (Field type: ID)</li><li><b>START</b>: Date at which a seed entered the study (Field type: Date)</li><li><b>STOP</b>: Date at which a seed exited the study (i.e. died) (Field type: Date)</li><li><b>STAGE</b>: Survival stage a seed reached during the study (Field type: Categorical)</li><li><b>GERM</b>: Germination status coded as 0: germinated (right-censored) or 1: failed to germinate (i.e. died) (Field type: Numeric)</li><li><b>SURV</b>: Survival status coded as 0: survived beyond end of study (right-censored) or 1: died (Field type: Numeric)</li><li><b>AGE</b>: Age of a seed from the date it entered the study until the date it died (Field type: Numeric)</li><li><b>CANOPY.COV</b>: Proportion canopy cover available to each seed in a given natural plot (Field type: Numeric)</li><li><b>PC1</b>: Principal Components Analysis variable used as a surrogate for tree size (Field type: Numeric)</li><li><b>TOTAL.SEEDTRAP</b>: The total number of seeds around each focal tree as a measure of medium-scale seed density around focal trees. Obtained from seed trap data (Field type: Numeric)</li><li><b>TOTALDENS.SEEDTRAP</b>: TOTAL.SEEDTRAP divided by the number of 1 sq.m. traps (24) to obtain average seed density around each focal tree (Field type: Numeric)</li><li><b>CONSP.ALL</b>: The total number of conspecific seeds surrounding a given seed in a natural plot (Field type: Numeric)</li><li><b>CONSP.ALIVE</b>: The number of conspecific seeds that were alive at a census and surrounding a given seed in a natural plot. This variable was used as a measure of local-scale (1 sq. m.) conspecific seed/seedling density in survival analyses (Field type: Numeric)</li><li><b>AGENT.CATEGORY.MORTALITY</b>: Mortality agents. Seedlings that survived beyond the end of the study were coded as NA in this column (Field type: Categorical)</li><li><b>PREDATOR</b>: Description of the mortality agents of each seed/seedling. NA (for seedlings that survived) (Field type: Categorical)</li></ul></li><li><p><b>ExclosureSingleRec-Seed</b> (described in worksheet ExclosureSingleRec-Seed)</p><p>Description: Seedling survival data in experimental (exclosure) and control plots</p><p>Number of fields: 17</p><p>Number of data rows: 1540</p><p>Fields: </p><ul><li><b>FTYPE</b>: Forest Type (Field type: Categorical)</li><li><b>TREE.ID</b>: Unique ID of experimental trees (Field type: Location)</li><li><b>Species</b>: Species identity (Field type: Taxa)</li><li><b>TRANSECT</b>: Unique ID of transects around each experimental tree (Field type: ID)</li><li><b>BEARING</b>: Transect compass bearing (Field type: Numeric)</li><li><b>PLOT</b>: Unique ID of natural plots along transects (Field type: ID)</li><li><b>DISTANCE</b>: Distance of natural plot along transect (Field type: Numeric)</li><li><b>SEED.ID</b>: Unique ID assigned to each seed in the field at the time of seed addition (Field type: ID)</li><li><b>DENS.TRT</b>: Density of seeds added to each plot (Field type: Numeric)</li><li><b>TRT</b>: Treatment coded as primary (unlogged) excl, primary-ctrl, logged excl and logged ctrl (Field type: Categorical)</li><li><b>START</b>: Date at which a was added or entered the study (Field type: Date)</li><li><b>STOP</b>: Date at which a seed exited the study (i.e. died) (Field type: Date)</li><li><b>STAGE</b>: Survival stage a seed reached during the study (Field type: Categorical)</li><li><b>SURV</b>: Survival status coded as 0: survived beyond end of study (right-censored) or 1: died (Field type: Numeric)</li><li><b>AGE</b>: Age of a seed from the date it entered the study until the date it died (Field type: Numeric)</li><li><b>MORTALITY</b>: Mortality agents. Seedlings that survived beyond the end of the study were coded as NA in this column (Field type: Categorical)</li><li><b>PREDATOR</b>: Description of the mortality agents of each seed/seedling. NA (for seedlings that survived) (Field type: Categorical)</li></ul></li></ol><p><b>Date range: </b>2014-08-12 to 2014-11-04</p><p><b>Latitudinal extent: </b>4.6896 to 4.7505</p><p><b>Longitudinal extent: </b>116.9643 to 117.5824</p><p><b>Taxonomic coverage: </b><br> All taxon names are validated against the GBIF backbone taxonomy. If a dataset uses a synonym, the accepted usage is shown followed by the dataset usage in brackets. Taxa that cannot be validated, including new species and other unknown taxa, morphospecies, functional groups and taxonomic levels not used in the GBIF backbone are shown in square brackets.</p><div>Plantae<br>&ensp;-&ensp;Tracheophyta<br>&ensp;-&ensp;&ensp;-&ensp;Magnoliopsida<br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;Malvales<br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;Dipterocarpaceae<br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;<i>Dryobalanops</i><br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;<i>Dryobalanops lanceolata</i><br></div><p></p>

opencc-by-4.0Dec 2018View details →
zenodo28/100

High genetic diversity but spatially restricted genetic connectivity in a Tropical Montane Cloud Forest tree (Magnolia schiedeana)

Magnolias are representative shrub and tree species of the Tropical Montane Cloud Forest (TMCF) in Mexico, which is one of the most endangered ecosystems due to anthropogenic landscape degradation and climate change. Magnolia schiedeana is a vulnerable and restricted endemic TMCF species, occurring in scattered TMCF fragments in the Sierra Madre Oriental. In this study, we investigated spatial patterns of genetic diversity across the M. schiedeana species range and assessed whether gene flow was influenced by topographic and environmental factors. We sampled eleven remnant populations across the species range and genotyped 180 individuals at eight nuclear microsatellite loci. Our data showed a strong spatial structure in five genetic clusters, which match the patchy geographic distribution of M. schiedeana. Contemporary migration rates between these genetic clusters were very low. Levels of genetic diversity within populations were moderate to high, and no evidence of inbreeding was found. Our results from landscape genetic analysis showed that isolation by distance, rather than topography or environmental variation, was the main process shaping genetic differentiation. Urgent actions are needed to protect M. schiedeana populations as most of them persist isolated within agricultural and urban landscapes. Ex-situ management actions would be crucial to ensure the conservation of genetically diverse germplasm for the in-situ propagation where it has gone locally extinct.

opencc-zeroNov 2022View details →
zenodo28/100

Tree growth periodicity in the ever-wet tropical forest of the Americas: Datasets

<p>Datasets for &quot;Tree growth periodicity in the ever-wet tropical forest of the Americas&quot;</p>

opencc-by-4.0Jan 2023View details →
zenodo28/100

Assessment of acoustic indices for monitoring phylogenetic and temporal patterns of biodiversity in tropical forests

<b>Description: </b><p>Acostic recordings of bird calls at SAFE in 2014. Four solar-powered Wildlife Song Meter SM3 bioacoustic recorders (Wildlife Acoustics Inc., Concord,<br>MA, USA) were deployed with omni-directional microphones (sensitivity: 20Hz - 20kHz). No exact locations recorded.</p><p><b>Project: </b>This dataset was collected as part of the following SAFE research project: <a href="https://www.safeproject.net/projects/project_view/175"><b>Continuous bio-acoustic monitoring (2020 extension)</b></a></p><p><b>XML metadata: </b>GEMINI compliant metadata for this dataset is available <a href="https://www.safeproject.net/datasets/xml_metadata?id=7740620">here</a></p><p><b>Files: </b>This dataset consists of 2 files: Trigg_safedata.xlsx, CLIPS.zip</p><p><b>Trigg_safedata.xlsx</b></p><p>This file contains dataset metadata and 1 data tables:</p><ol><li><p><b>Data</b> (described in worksheet Data)</p><p>Description: excel sheet with clips listed and birds identified</p><p>Number of fields: 7</p><p>Number of data rows: 837</p><p>Fields: </p><ul><li><b>FileNumber</b>: The audio files, which are labelled 1 to 120 (Field type: id)</li><li><b>StartTime</b>: approximate time when the species call began. (Field type: numeric)</li><li><b>EndTime</b>: approximate end time of the call. (Field type: numeric)</li><li><b>original_taxon_names</b>: species that can be heard in the recording. Original version as entered in to worksheet (Field type: comments)</li><li><b>Species</b>: species that can be heard in the recording. Corrected name, spelling mistakes and excess spaces removed etc. (Field type: taxa)</li><li><b>CallType</b>: Type of sound being identified (Field type: categorical)</li><li><b>IdCertainty</b>: Degree of certainty (Field type: categorical)</li></ul></li></ol><p><b>CLIPS.zip</b></p><p>Description: Zip file containing original audio clips used to generate these data</p><p><b>Date range: </b>2015-04-01 to 2015-06-30</p><p><b>Latitudinal extent: </b>4.6000 to 4.8000</p><p><b>Longitudinal extent: </b>117.5000 to 117.7000</p><p><b>Taxonomic coverage: </b><br> All taxon names are validated against the GBIF backbone taxonomy. If a dataset uses a synonym, the accepted usage is shown followed by the dataset usage in brackets. Taxa that cannot be validated, including new species and other unknown taxa, morphospecies, functional groups and taxonomic levels not used in the GBIF backbone are shown in square brackets.</p><div>&ensp;-&ensp; Animalia <br>&ensp;-&ensp;&ensp;-&ensp; Chordata <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; Mammalia <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; Primates <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; Hylobatidae <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Hylobates</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Hylobates funereus</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; Aves <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; Galliformes <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; Phasianidae <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Argusianus</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Argusianus argus</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; Bucerotiformes <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; Bucerotidae <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Anorrhinus</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Anorrhinus galeritus</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Buceros</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Buceros rhinoceros</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Rhinoplax</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Rhinoplax vigil</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; Psittaciformes <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; Psittacidae <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Loriculus</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Loriculus galgulus</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; Passeriformes <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; Cisticolidae <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Orthotomus</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Orthotomus ruficeps</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Orthotomus atrogularis</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Orthotomus sericeus</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Prinia</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Prinia flaviventris</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; Chloropseidae <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Chloropsis</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Chloropsis cyanopogon</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; Aegithinidae <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Aegithina</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Aegithina viridissima</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; Pycnonotidae <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Pycnonotus</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Pycnonotus atriceps</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Pycnonotus simplex</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Pycnonotus erythropthalmos</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Pycnonotus goiavier</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Alophoixus</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Alophoixus bres</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Iole</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Iole olivacea</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; Dicaeidae <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Prionochilus</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Prionochilus xanthopygius</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Dicaeum</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Dicaeum trigonostigma</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; Monarchidae <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Hypothymis</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Hypothymis azurea</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Rhipidura</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Rhipidura javanica</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; Irenidae <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Irena</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Irena puella</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; Muscicapidae <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Trichixos</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Trichixos pyrropygus</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; Tephrodornithidae <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Hemipus</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Hemipus picatus</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Hemipus hirundinaceus</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; Pellorneidae <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Kenopia</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Kenopia striata</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Pellorneum</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Pellorneum capistratum</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Pellorneum bicolor</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Malacopteron</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Malacopteron affine</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Malacocincla</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Malacocincla malaccensis</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Alcippe</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Alcippe brunneicauda</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; Corvidae <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Corvus</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Corvus enca</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; Acanthizidae <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Gerygone</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Gerygone sulphurea</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; Timaliidae <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Cyanoderma</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Cyanoderma erythropterum</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Cyanoderma rufifrons</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Mixornis</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Mixornis bornensis</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Macronus</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Macronus ptilosus</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Stachyris</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Stachyris maculata</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Stachyris poliocephala</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Pomatorhinus</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Pomatorhinus montanus</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; Nectariniidae <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Anthreptes</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Anthreptes simplex</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Arachnothera</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Arachnothera longirostra</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Arachnothera affinis</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; Eurylaimidae <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Eurylaimus</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Eurylaimus ochromalus</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; Piciformes <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; Ramphastidae <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Megalaima</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Megalaima australis</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Megalaima australis duvaucelii</i> (as homotypic_synonym: <i>Psilopogon duvaucelii</i>)<br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; Picidae <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Meiglyptes</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Meiglyptes tukki</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Dinopium</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Dinopium rafflesii</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Blythipicus</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Blythipicus rubiginosus</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Mulleripicus</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Mulleripicus pulverulentus</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; Cuculiformes <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; Cuculidae <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Cacomantis</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Cacomantis sonneratii</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Cacomantis merulinus</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Rhinortha</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Rhinortha chlorophaea</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Cuculus</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Cuculus vagans</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Centropus</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Centropus sinensis</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; Columbiformes <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; Columbidae <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Chalcophaps</i> <br>&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp;&ensp;-&ensp; <i>Chalcophaps indica</i> <br></div><p></p>

opencc-by-4.0Mar 2023View details →
zenodo28/100

Linked collectors and determiners for: A first faunistic study on the tribe Oniticellini Kolbe, 1905 (Coleoptera: Scarabaeidae) of Baikunthapur Tropical Forest of the Himalayan foothills, West Bengal, India.

Natural history specimen data linked to collectors and determiners held within, "A first faunistic study on the tribe Oniticellini Kolbe, 1905 (Coleoptera: Scarabaeidae) of Baikunthapur Tropical Forest of the Himalayan foothills, West Bengal, India". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="http://bionomia.net/dataset/39721886-7865-4d89-a573-9fd6f143ef00">https://bionomia.net/dataset/39721886-7865-4d89-a573-9fd6f143ef00</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/39721886-7865-4d89-a573-9fd6f143ef00">https://gbif.org/dataset/39721886-7865-4d89-a573-9fd6f143ef00</a>. Formatted as a Frictionless Data package.

opencc-zeroJan 2024View details →
dryad28/100

Data from: Towards accurate species-level metabarcoding of arthropod communities from the tropical forest canopy

Open the record for dataset details and reuse information.

publicMar 2019View details →
dryad28/100

Data from: The impact of tropical forest logging and oil palm agriculture on the soil microbiome

Open the record for dataset details and reuse information.

publicMar 2016View details →
dryad28/100

Data from: Clothing color mediates lizard responses to humans in a tropical forest

Open the record for dataset details and reuse information.

publicDec 2019View details →
dryad28/100

Data from: Low modularity and specialization in a commensalistic epiphyte–phorophyte network in a tropical cloud forest

Open the record for dataset details and reuse information.

publicApr 2019View details →
dryad28/100

Data from: The value of biodiversity for the functioning of tropical forests: insurance effects during the first decade of the Sabah biodiversity experiment

Open the record for dataset details and reuse information.

publicOct 2016View details →
dryad28/100

Data from: Nutrient limitation of woody debris decomposition in a tropical forest: contrasting effects of N and P addition

Open the record for dataset details and reuse information.

publicMay 2015View details →
dryad28/100

Data from: Reconsidering the phosphorus limitation of soil microbial activity in tropical forests

Open the record for dataset details and reuse information.

publicDec 2018View details →
dryad28/100

Effects of tree species on root exudation and mineralization of organic acids in a tropical forest

Open the record for dataset details and reuse information.

publicMay 2021View details →
dryad28/100

Wind creates crown shyness, asymmetry and orientation in a tropical montane oak forest

Open the record for dataset details and reuse information.

publicSep 2020View details →
dryad28/100

Data from: Estimation of aboveground net primary productivity in secondary tropical dry forests using the Carnegie–Ames–Stanford approach (CASA) model

Open the record for dataset details and reuse information.

publicSep 2017View details →
dryad28/100

Data from: Determinants of litter decomposition rates in a tropical forest: functional traits, phylogeny and ecological succession

Open the record for dataset details and reuse information.

publicJan 2017View details →
dryad28/100

Data from: Conservative species drive biomass productivity in tropical dry forests

Open the record for dataset details and reuse information.

publicJan 2017View details →
dryad28/100

Data from: Biodiversity in species, traits and structure determines carbon stocks and uptake in tropical forests

Open the record for dataset details and reuse information.

publicJun 2018View details →
dryad28/100

Data from: Importance of deep water uptake in tropical eucalypt forest

Open the record for dataset details and reuse information.

publicJul 2017View details →

ScienceDex guides

Understand access before you commit

These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.

Compare curated datasets

Allen Brain Atlas

Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.

allen-brain-atlas
neuroscienceopenDocumentation, web resources, and API references are available online.
Last verified 2026-04-30Open record

Annotated Behaviour and Observability Dataset (ABODe)

ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.

abode-home-cage
behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.
Last verified 2026-04-30Open record

DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

dandi-nwb
electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.
Last verified 2026-04-30Open record

International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

ibl
behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.
Last verified 2026-04-29Open record

OpenNeuro

OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.

openneuro
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record