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1,195
datasets available to search
ShareScore release 0.9.0
Dataset results
1,195 results for “Cancer Genomics”
Identification of TWIST1-associated genomic regions in human breast cancer cell MCF7
GEO Series GSE189826. Homo sapiens. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
3D genome of CD8+ T cells reveals IRF8-mediated exhaustion in cancer
GEO Series GSE269676. Mus musculus. 18 samples. Type: Other.
Genomic binding of wild-type and mutant Trp53 in mouse breast cancer cell lines
GEO Series GSE155639. Mus musculus. 18 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Genomic profiles vary with race and subtype in young African American and European American breast cancer (aCGH)
GEO Series GSE26214. Homo sapiens. 49 samples. Type: Genome variation profiling by genome tiling array.
Expression Data from Leukemia Patients Supporting Personalized Functional Cancer Genomics Analyses
GEO Series GSE42731. Homo sapiens. 50 samples. Type: Expression profiling by array.
Epigenetic and 3D Genome Changes Drive Primary Trastuzumab Resistance in HER2+ Breast Cancer
GEO Series GSE297715. Homo sapiens. 20 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Canadian Prostate Cancer GEnome NEtwork – HuGene RNA expression
GEO Series GSE56916. Homo sapiens. 85 samples. Type: Expression profiling by array.
HER2-enriched tumor initiating cell (HTIC) genomic predictor of response following neoadjuvant trastuzumab-based chemotherapy in HER2+ breast cancer
GEO Series GSE37946. Homo sapiens. 50 samples. Type: Expression profiling by array.
Genomic profiling of colorectal cancer from patients with Lynch syndrome and Familial colorectal cancer type X with comparison to sporadic microsatelite stable and instable colorectal cancer
GEO Series GSE38405. Homo sapiens. 91 samples. Type: Genome variation profiling by genome tiling array.
Consticted migration is associated with stable 3D genome structure differences in cancer cells (Hi-C)
GEO Series GSE143676. Homo sapiens. 27 samples. Type: Other.
The evolution of single cell-derived colorectal cancer cell lines is dominated by the continued selection of tumor specific genomic imbalances, despite random chromosomal instability
GEO Series GSE102647. Homo sapiens. 24 samples. Type: Expression profiling by array.
The Cancer Genome Atlas Program
The Cancer Genome Atlas (TCGA), a landmark cancer genomics program, molecularly characterized over 20,000 primary cancer and matched normal samples spanning 33 cancer types. This joint effort between NCI and the National Human Genome Research Institute began in 2006, bringing together researchers from diverse disciplines and multiple institutions.
Medulloblastoma Pediatric Cancer Genome Project
Whole genome sequencing of 37 medulloblastoma tumors and their matched normals from the Pediatric Cancer Genome Project (PCGP), a joint project by St. Jude Children's Research Hospital and Washington University.
Genomic Profiling of Relapsed and Refractory Childhood Cancers
Through clinical trials focused on molecularly guided therapy in pediatric cancers (NCT01355679, NCT01802567, NCT02162732), the Beat Childhood Cancer Consortium performed paired tumor/normal whole exome sequencing and/or tumor mRNA sequencing for 202 pediatric or adolescent young adult patients with rare, relapsed and refractory cancers (including neuroblastoma, Ewing sarcoma, osteosarcoma, rhabdomyosarcoma, ependymoma, glioma, and other rare solid tumors). A subset of these patients had multiple biopsies sequenced, including longitudinal profiling.
Comprehensive Genomic Sequencing of Pediatric Cancer Cases (CMRI/KUCC)
This study provides paired tumor normal genomic sequencing data from ~ 200 children with cancer, including both solid tumors and leukemias, done by the Children's Mercy Research Institute (CMRI) and University of Kansas Cancer Center (KUCC). These data include whole genome sequencing (generally, ~20x), whole exome sequencing (generally, ~300x), bulk RNA sequencing (generally, ~80 million reads), and single-cell RNA and ATAC sequencing (>50,000 reads/cell). Additional phenotypic, pathologic, and genetic data, gathered clinically for these samples, are also provided.
Feasibility and Clinical Utility of Whole Genome Profiling in Pediatric and Young Adult Cancers
Comprehensive Whole Genome Sequencing and Whole Transcriptome (RNASeq) analyses from 114 pediatric patients at Memorial Sloan Kettering. This dataset was used as a prospective clinical utility and feasibility study. By using our Isabl infrastructure for precision medicine, we developed a 2-week end-to-end pipeline to analyze cfDNA, WGS and WTS, which we refer to as cWGTS.
Comprehensive Genomic Sequencing of Pediatric Cancer Cases (CMRI/KUCC)
Open the record for dataset details and reuse information.
Genomic profiles vary with race and subtype in young African American and European American breast cancer
GEO Series GSE26233. Homo sapiens. 98 samples. Type: Genome variation profiling by genome tiling array; SNP genotyping by SNP array; Genome variation profiling by SNP array.
EZH2 inhibition results in genome-wide PRC2 redistribution in cancer cell models
GEO Series GSE134136. Homo sapiens. 44 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Genome-wide perturbations by miRNA map onto functional cancer pathways identifying regulators of chromatin modifiers
GEO Series GSE64020. Homo sapiens. 11 samples. Type: Expression profiling by array.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.