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FIGURE 5 in Six new species of Cladosporium associated with decayed leaves of native bamboo (Bambusoideae) in a fragment of Brazilian Atlantic Forest

FIGURE 5. Cladosporium brigadeirensis (VIC 44238, holotype). A–D. Colonies on A. Potato dextrose agar; B. Malt extract agar; C. Oatmeal agar; D. Synthetic nutrient-poor agar, after 14 days at 25 ºC, under near-ultraviolet light, respectively. E–K. Macronematous conidiophores. E. Mult-branched conidiophore. I. Conidiogenous cell details. J. Terminal and intercalary conidiogenous cells. K. Secondary ramoconidia prolongation. L. Micronematous conidiophores. M. Microcyclic conidiogenesis. Scale bars: E = 50 µM; F–M = 20 µM.

FIGURE 7 in Six new species of Cladosporium associated with decayed leaves of native bamboo (Bambusoideae) in a fragment of Brazilian Atlantic Forest

FIGURE 7. Cladosporium pseudotenuissimum (VIC 44422, holotype). A–D. Colonies on A. Potato dextrose agar; B. Malt extract agar; C. Oatmeal agar; D. Synthetic nutrient-poor agar, after 14 days at 25 ºC, under near-ultraviolet light, respectively. E–J. Macronematous conidiophores and conidia. E, F. Micronematous conidiophores at arrows. K. Conidiogenous cel with conidia. L. Bubble-like swelling details. M. Microcyclic conidiogenesis (black arrow) and Ramoconidia (red arrow). Scale bars: E = 50 µM; F–M = 20 µM.

FIGURE 6 in Six new species of Cladosporium associated with decayed leaves of native bamboo (Bambusoideae) in a fragment of Brazilian Atlantic Forest

FIGURE 6. Cladosporium chusqueae (VIC 44239, holotype). A–D. Colonies on A. Potato dextrose agar; B. Malt extract agar; C. Oatmeal agar; D. Synthetic nutrient-poor agar, after 14 days at 25 ºC, under near-ultraviolet light, respectively. E–K. Macronematous conidiophores and conidia. G. Terminal conidiophore. H. Short peg-like prolongation. I. Bent conidiophore; J–K. Conidiophore branched near the base at a 90º angle. L. Micronematous conidiophores. M. Microcyclic conidiogenesis. Scale bars: E = 50 µM; F–M = 20 µM.

FIGURE. Cladosporium benschii (VIC 44412, holotype). A–D. Colonies on A. Potato dextrose agar; B. Malt extract agar; C. Oatmeal agar; D. Synthetic nutrient-poor agar, after 14 days at 25 ºC, under near-ultraviolet light, respectively. E–J. Non-geniculate macronematous conidiophores and conidia. K. Conidiogenous cells with slightly protuberant loci. L. Micronematous conidiophores. M. Microcyclic conidiogenesis. Scale bars: E–M = 20 µM. in Six new species of Cladosporium associated with decayed leaves of native bamboo (Bambusoideae) in a fragment of Brazilian Atlantic Forest

FIGURE. Cladosporium benschii (VIC 44412, holotype). A–D. Colonies on A. Potato dextrose agar; B. Malt extract agar; C. Oatmeal agar; D. Synthetic nutrient-poor agar, after 14 days at 25 ºC, under near-ultraviolet light, respectively. E–J. Non-geniculate macronematous conidiophores and conidia. K. Conidiogenous cells with slightly protuberant loci. L. Micronematous conidiophores. M. Microcyclic conidiogenesis. Scale bars: E–M = 20 µM.

FIGURE. Cladosporium bambusicola (VIC 44237, holotype). A–D. Colonies on A. Potato dextrose agar; B. Malt extract agar; C. Oatmeal agar; D. Synthetic nutrient-poor agar, after 14 days at 25 ºC, under near-ultraviolet light, respectively. E–F. Conidiophore and bigger conidia. G–H. Conidiophores and smaller conidia. I. Stromatic hyphal aggregation. J–K. Micronematous conidiophores. L. Ramoconidia and conidia. M. Microcyclic conidiogenesis. Scale bars: E = 50 µM; F–M = 20 µM. in Six new species of Cladosporium associated with decayed leaves of native bamboo (Bambusoideae) in a fragment of Brazilian Atlantic Forest

FIGURE. Cladosporium bambusicola (VIC 44237, holotype). A–D. Colonies on A. Potato dextrose agar; B. Malt extract agar; C. Oatmeal agar; D. Synthetic nutrient-poor agar, after 14 days at 25 ºC, under near-ultraviolet light, respectively. E–F. Conidiophore and bigger conidia. G–H. Conidiophores and smaller conidia. I. Stromatic hyphal aggregation. J–K. Micronematous conidiophores. L. Ramoconidia and conidia. M. Microcyclic conidiogenesis. Scale bars: E = 50 µM; F–M = 20 µM.

FIGURE. Multilocus phylogenetic tree inferred from Bayesian analysis based on the combined TEF1-α and ACT sequences. Bayesian posterior probabilities are indicated next to the nodes. The tree was rooted with Cladosporium herbarum CBS 121621. The species in this study are indicated in bold. Types of species are indicated after the culture collection number (T = ex-type, ex-epitype, ex-neotype, or reference strain). in Six new species of Cladosporium associated with decayed leaves of native bamboo (Bambusoideae) in a fragment of Brazilian Atlantic Forest

FIGURE. Multilocus phylogenetic tree inferred from Bayesian analysis based on the combined TEF1-α and ACT sequences. Bayesian posterior probabilities are indicated next to the nodes. The tree was rooted with Cladosporium herbarum CBS 121621. The species in this study are indicated in bold. Types of species are indicated after the culture collection number (T = ex-type, ex-epitype, ex-neotype, or reference strain).

FIGURE. (Continued) Multilocus phylogenetic tree inferred from Bayesian analysis based on the combined TEF1-α and ACT sequences. Bayesian posterior probabilities are indicated next to the nodes. The tree was rooted with Cladosporium herbarum CBS 121621. The species in this study are indicated in bold. Types of species are indicated after the culture collection number (T = ex-type, ex-epitype, exneotype, or reference strain). in Six new species of Cladosporium associated with decayed leaves of native bamboo (Bambusoideae) in a fragment of Brazilian Atlantic Forest

FIGURE. (Continued) Multilocus phylogenetic tree inferred from Bayesian analysis based on the combined TEF1-α and ACT sequences. Bayesian posterior probabilities are indicated next to the nodes. The tree was rooted with Cladosporium herbarum CBS 121621. The species in this study are indicated in bold. Types of species are indicated after the culture collection number (T = ex-type, ex-epitype, exneotype, or reference strain).

FIGURE. Cladosporium aulonemiae (VIC 44413, holotype). A–D. Colonies on A. Potato dextrose agar; B. Malt extract agar; C. Oatmeal agar; D. Synthetic nutrient-poor agar, after 14 days at 25 ºC, under near-ultraviolet light, respectively. E–G. Macronematous conidiophores and numerous conidia; H–I. Formation of loci in close succession; I. Spread polysaccharide-like material; J. Micronematous conidiophores; K. Ramoconidia and conidia; L. Microcyclic conidiogenesis; M. Stromatic hyphal aggregation. Scale bars: E–M = 20 µM. in Six new species of Cladosporium associated with decayed leaves of native bamboo (Bambusoideae) in a fragment of Brazilian Atlantic Forest

FIGURE. Cladosporium aulonemiae (VIC 44413, holotype). A–D. Colonies on A. Potato dextrose agar; B. Malt extract agar; C. Oatmeal agar; D. Synthetic nutrient-poor agar, after 14 days at 25 ºC, under near-ultraviolet light, respectively. E–G. Macronematous conidiophores and numerous conidia; H–I. Formation of loci in close succession; I. Spread polysaccharide-like material; J. Micronematous conidiophores; K. Ramoconidia and conidia; L. Microcyclic conidiogenesis; M. Stromatic hyphal aggregation. Scale bars: E–M = 20 µM.

opencc-by-4.0Jun 2022View details →

CRAG: De novo characterization of cell-free DNA fragmentation hotspots in plasma whole-genome sequencing

Supplementary dataset for the manuscript: CRAG: De novo characterization of cell-free DNA fragmentation hotspots in plasma whole-genome sequencing  Xionghui Zhou1,*, Haizi Zheng1,*, Hailu Fu1,*, Kelsey L. Dillehay McKillip2-3, Susan M. Pinney2,4, Yaping Liu1-2,5-7 # Affiliations: 1 Division of Human Genetics, Cincinnati Children’s Hospital Medical Center, Cincinnati, OH 45229 2 University of Cincinnati Cancer Center, Cincinnati, OH 45229 3 Department of Pathology & Laboratory Medicine, University of Cincinnati College of Medicine, Cincinnati, OH 45229 4 Department of Environmental and Public Health Sciences, University of Cincinnati College of Medicine, Cincinnati, OH 45229 5 Division of Biomedical Informatics, Cincinnati Children’s Hospital Medical Center, Cincinnati, OH 45229 6 Department of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, OH 45229 7 Department of Electrical Engineering and Computing Sciences, University of Cincinnati College of Engineering and Applied Science, Cincinnati, OH 45229 * These authors contributed equally # Email: lyping1986@gmail.com

Fig. 7 in Broadly Distributed but Genetically Fragmented: Demographic Consequences of Pleistocene Climatic Oscillations in a Common Iberian Grasshopper

Fig. 7. Demographic history of the studied populations of Pantel's grasshopper (Omocestus panteli) inferred using STAIRWAY PLOT. Panels show the median of effective population size (N) over time, estimated assuming a mutation rate of 2.8 × 10−9 and a 1-yr generation time (both axes in a logarithmic scale). Vertical e dashed lines indicate the Last Glacial Maximum (LGM; ca. 21 ka). Number of polymorphic SNPs used to calculate the site frequency spectrum (SFS) indicated in parentheses. Colors correspond to the main genetic cluster at which populations were predominantly assigned according to STRUCTURE analyses for K = 6 (Fig. 3). Population codes as described inTable 1.

Fig. 6 in Broadly Distributed but Genetically Fragmented: Demographic Consequences of Pleistocene Climatic Oscillations in a Common Iberian Grasshopper

Fig. 6. Relationships (A) between genetic diversity (π) and latitude and (B) between long-term effective population size (Ne) and environmental suitability during the last glacial maximum (LGM) inferred by projecting the species-specific environmental niche model (ENM) to LGM bioclimatic conditions under the CCSM4 general atmospheric circulation model.

Fig. 5 in Broadly Distributed but Genetically Fragmented: Demographic Consequences of Pleistocene Climatic Oscillations in a Common Iberian Grasshopper

Fig. 5. Relationship between genetic differentiation (FST) and resistance distances based on environmental suitability during the LGM inferred by projecting the species-specific environmental niche model (ENM) to LGM bioclimatic conditions under the CCSM4 general atmospheric circulation model.

Fig. 3 in Broadly Distributed but Genetically Fragmented: Demographic Consequences of Pleistocene Climatic Oscillations in a Common Iberian Grasshopper

Fig. 3. Results of genetic assignments for populations of the Pantel's grasshopper (Omocestus panteli) based on the Bayesian method implemented in the program STRUCTURE and a discriminant analysis of principal components (DAPC). Each individual is represented by a vertical bar, which is partitioned into K-colored segments showing the individual's probability of belonging to the cluster with that color.Thin vertical black lines separate individuals from different populations. Analyses are based on a dataset of 14,454 SNPs. Population codes as described inTable 1.

Fig. 1 in Broadly Distributed but Genetically Fragmented: Demographic Consequences of Pleistocene Climatic Oscillations in a Common Iberian Grasshopper

Fig. 1. (A) Map showing the geographical location of sampling populations of Pantel's grasshopper (Omocestus panteli), with dot colors indicating their respective levels of genetic diversity (π, in red to blue scale). Dot size is proportional to the number of genotyped individuals (Table 1). (B–D) Projections of the species-specific environmental niche model (ENM) for (B) present and (C–D) last glacial maximum (LGM) bioclimatic conditions under the (C) CCSM4 and (D) MIROC-ESM general atmospheric circulation models. Map in the present shows occurrence points (crosses) used for ENM. Population codes as described in Table 1.

FIGURE 2. A–B in Taxonomic study of Myrtaceae in forest fragments in Amazonian Maranhão, Brazil

FIGURE 2. A–B. Flower buds and flowers in Calycolpus goetheanus. C–D. Flowers in Eugenia biflora. E–F. Flower buds and immature fruits in E. caducibracteata. G. Immature fruit in E. densiracemosa. H. Immature fruits in E. flavescens. I. Immature fruits in E. patens. J. Immature fruits in E. polystachya. K. Flowers in E. protenta. L–M. Flower buds and flowers in E. punicifolia. N–P. Flower buds, flowers and immature fruits in E. stictopetala.

FIGURE 3. A–B. Eugenia dittocrepis. A. Habit. B. Immature globose fruit. C–D. E. lambertiana. C. Habit. D in Taxonomic study of Myrtaceae in forest fragments in Amazonian Maranhão, Brazil

FIGURE 3. A–B. Eugenia dittocrepis. A. Habit. B. Immature globose fruit. C–D. E. lambertiana. C. Habit. D. Inflorescence in fascicle. E–H. E. patens. E. Habit. F. Inflorescence in a simple raceme. G. Flower bud. H. Fruits. I–M. E. patrisii. I. Habit. J. Inflorescence in raceme auxotelic. K. Flower bud. L. Imature fruit with indumentum. M. Mature glabrous fruit.

FIGURE 4. A–D. Eugenia polystachya. A. Habit. B in Taxonomic study of Myrtaceae in forest fragments in Amazonian Maranhão, Brazil

FIGURE 4. A–D. Eugenia polystachya. A. Habit. B. Inflorescence in a simple raceme. C. Flower bud. D. Fruit. E–G. E. wullschlaegeliana. E. Habit. F. Inflorescence in fascicle. G. Fruit. H–K. Myrcia cuprea. H. Habit. I. Inflorescence in panicle. J. Flower bud. K. Fruit. L–N. M. grandis. L. Habit. M. Inflorescence in panicle. N. Flower bud.

FIGURE 6. A-B. Myrcia minutiflora. A. Habit. B. Fruit. C–E. Myrcia neoclusiifolia. C. Habit. D in Taxonomic study of Myrtaceae in forest fragments in Amazonian Maranhão, Brazil

FIGURE 6. A-B. Myrcia minutiflora. A. Habit. B. Fruit. C–E. Myrcia neoclusiifolia. C. Habit. D. Inflorescence in panicle. E. Fruit. F–G. Myrcia neospeciosa. F. Habit. G. Fruit. H–J. Psidium acutangulum. H. Habit. I. Inflorescence in dichasia. J. Fruit.

FIGURE 5. A in Taxonomic study of Myrtaceae in forest fragments in Amazonian Maranhão, Brazil

FIGURE 5. A. Fruits in Myrcia amazonica. B. Flowers in Myrcia bracteata. C–D. Flowers and fruits in Myrcia cuprea. E–F. Flowers and immature fruits in M. eximia. G–H. Flowers in Myrcia guianensis. I–J. Flowers bud and immature fruits in Myrcia multiflora. K–L. Flowers bud and immature fruits in Myrcia selloi. M–N. Flowers and fruits in Myrcia splendens. O. Flowers in Myrciaria tenella. P. Fruit in Psidium guineense.