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150
datasets available to search
ShareScore release 0.9.0
Dataset results
150 results for “5hmC”
Loss of Uhrf1 in neural stem cells leads to activation of retroviral elements and delayed neurodegeneration [5hmC]
GEO Series GSE84544. Mus musculus. 4 samples. Type: Methylation profiling by high throughput sequencing.
Joint single-cell profiling resolves 5mC and 5hmC and reveals their distinct gene regulatory effects [Joint-snhmC-seq: snhmCseq2.split]
GEO Series GSE236784. Mus musculus. 565 samples. Type: Methylation profiling by high throughput sequencing.
5hmC enrichment in HUVEC following treatment with interferon gamma or high glucose
GEO Series GSE232280. Homo sapiens. 5 samples. Type: Methylation profiling by high throughput sequencing.
Selective loss of 5hmC links to A-T Purkinje cell vulnerability
GEO Series GSE61169. Homo sapiens. 19 samples. Type: Expression profiling by array; Methylation profiling by high throughput sequencing.
Maintenance of DNA methylation in embryonic stem cells depends on the histone H3K9 methyltransferases (K9 KO 5hmC-capture-seq)
GEO Series GSE47892. Mus musculus. 2 samples. Type: Methylation profiling by high throughput sequencing.
TFEB-induced gene expression, 5hmC and 5mC changes in AML cells
GEO Series GSE132587. Homo sapiens. 36 samples. Type: Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing.
Genome-wide maps of 5hmC levels in mouse Inguinal white adipose tissue
GEO Series GSE153092. Mus musculus. 4 samples. Type: Methylation profiling by high throughput sequencing.
UHRF2 Commissions the Accomplishment of DNA Demethylation through Allosteric Activation by 5hmC and K33-linked Ubiquitination of XRCC1
GEO Series GSE141297. Mus musculus. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Developmental and Injury-induced Changes in DNA Methylation in Regenerative versus Non-regenerative Regions of the Vertebrate (Xenopus laevis) Central Nervous System assayed by 5hmC MeDIP and by ChIP-
GEO Series GSE183350. Xenopus laevis. 76 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing.
Comparative high density microarray analysis of global 5hmC patterns in mouse brain and liver following independent affinity based enrichment protocols.
GEO Series GSE51577. Mus musculus. 9 samples. Type: Methylation profiling by genome tiling array.
TDP-43 stable deficiency leads to transcriptional dysregulation and transposable elements activation via global R-loops and 5hmC landscape alteration [5hmC-Seal-seq]
GEO Series GSE230405. Homo sapiens. 7 samples. Type: Methylation profiling by high throughput sequencing.
Genome-wide 5-hydroxymethylcytosine (5hmC) emerges at early stage of in vitro hepatocyte differentiation [Methylation]
GEO Series GSE130844. Homo sapiens. 16 samples. Type: Methylation profiling by genome tiling array.
Genome wide 5hmC patterns in the mouse liver, embryonic fibroblasts and induced pluripontent stem cells.
GEO Series GSE66889. Mus musculus. 8 samples. Type: Methylation profiling by high throughput sequencing.
5hmC modification of monocytes and macrophages
GEO Series GSE213203. Homo sapiens. 24 samples. Type: Other.
TDP-43 stable deficiency leads to transcriptional dysregulation and transposable elements activation via global R-loops and 5hmC landscape alteration [DRIP-Seq]
GEO Series GSE230407. Homo sapiens. 9 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
A study of alterations in DNA epigenetic modifications (5mC and 5hmC) and gene expression influenced by simulated microgravity in human lymphoblastoid cells
GEO Series GSE65944. Homo sapiens. 8 samples. Type: Methylation profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
MeCP2 binds to 5hmC enriched within active genes and accessible chromatin in the nervous system
GEO Series GSE42880. Mus musculus. 50 samples. Type: Methylation profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Other.
TDP-43 stable deficiency leads to transcriptional dysregulation and transposable elements activation via global R-loops and 5hmC landscape alteration
GEO Series GSE230410. Homo sapiens. 32 samples. Type: Methylation profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Other.
Joint single-cell profiling resolves 5mC and 5hmC and reveals their distinct gene regulatory effects [snhmCseq]
GEO Series GSE236776. Mus musculus. 360 samples. Type: Methylation profiling by high throughput sequencing.
5-hydroxymethylcytosine-mediated epigenetic dynamics during neurodevelopment and aging [5hmC Capture and Seq]
GEO Series GSE32050. Homo sapiens; Mus musculus; Rattus norvegicus. 24 samples. Type: Methylation profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.