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Assessing the feasibility and acceptability of a pre-clinic vital signs assessment in primary care: a pilot study.
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Replication package for: Acceptance of inequality between children: Large-scale experimental evidence from China and Norway
<p>CAppelen, Alexander W., Falch, Ranveig, Huang, Zhongjing, and Tungodden, Bertil, "Acceptance of inequality between children: Large-scale experimental evidence from China and Norway," October 2024</p>
Table 2 in Confirmed polyphyly, generic recircumscription and typification of Dysoxylum (Meliaceae), with revised disposition of currently accepted species
<p><b>Table 2.</b> List of species represented in the tree, arranged according to the clades to which they belong. The species within in each clade are listed alphabetically.</p><table><tbody><tr><th>Clade</th><th>Species</th></tr></tbody><tbody><tr><th>1</th><td><i>Didymocheton aliquantulus</i></td></tr><tr><th>(<i>Didymocheton</i>)</th><td><i>Didymocheton alliaceus</i></td></tr><tr><th></th><td><i>Didymocheton aneityensis</i></td></tr><tr><th></th><td><i>Didymocheton annae</i></td></tr><tr><th></th><td><i>Didymocheton bijugus</i></td></tr><tr><th></th><td><i>Didymocheton canalensis</i></td></tr><tr><th></th><td><i>Didymocheton fraserianus</i></td></tr><tr><th></th><td><i>Didymocheton gaudichaudianus</i></td></tr><tr><th></th><td><i>Didymocheton hornei</i> var. <i>glabratus</i></td></tr><tr><th></th><td><i>Didymocheton hornei</i> var. <i>hornei</i></td></tr><tr><th></th><td><i>Didymocheton huntii</i></td></tr><tr><th></th><td><i>Didymocheton lenticellaris</i></td></tr><tr><th></th><td><i>Didymocheton macranthus</i></td></tr><tr><th></th><td><i>Didymocheton maota</i></td></tr><tr><th></th><td><i>Didymocheton minutiflorus</i></td></tr><tr><th></th><td><i>Didymocheton mollis</i></td></tr><tr><th></th><td><i>Didymocheton mollissimus</i></td></tr><tr><th></th><td><i>Didymocheton multijugus</i></td></tr><tr><th></th><td><i>Didymocheton myriandrus</i></td></tr><tr><th></th><td><i>Didymocheton nutans</i></td></tr><tr><th></th><td><i>Didymocheton pachyphyllus</i></td></tr><tr><th></th><td><i>Didymocheton pachypodus</i></td></tr><tr><th></th><td><i>Didymocheton papuanus</i></td></tr><tr><th></th><td><i>Didymocheton pettigrewianus</i></td></tr><tr><th></th><td><i>Didymocheton quercifolius</i></td></tr><tr><th></th><td><i>Didymocheton roseus</i></td></tr><tr><th></th><td><i>Didymocheton samoensis</i></td></tr><tr><th></th><td><i>Didymocheton setosus</i></td></tr><tr><th></th><td><i>Didymocheton sparsiflorus</i></td></tr><tr><th></th><td><i>Didymocheton spectabilis</i></td></tr><tr><th></th><td><i>Didymocheton tenuiflorus</i></td></tr><tr><th></th><td><i>Didymocheton tongensis</i></td></tr><tr><th></th><td><i>Didymocheton variabilis</i></td></tr><tr><th>2</th><td><i>Cabralea canjerana</i></td></tr><tr><th>(<i>Cabralea</i>)</th><td><i>Cabralea canjerana</i> subsp. <i>canjerana</i></td></tr><tr><th></th><td><i>Cabralea canjerana</i> subsp. <i>polytricha</i></td></tr><tr><th>3</th><td><i>Aglaia agglomerata</i></td></tr><tr><th>(Aglaieae sensu</th><td><i>Aglaia argentea</i></td></tr><tr><th>Pennington &</th><td><i>Aglaia cucullata</i></td></tr><tr><th>Styles, 1975)</th><td><i>Aglaia leptantha</i></td></tr><tr><th></th><td><i>Aglaia membranifolia</i></td></tr><tr><th></th><td><i>Aglaia nyaruensis</i></td></tr><tr><th></th><td><i>Aglaia odorata</i></td></tr><tr><th></th><td><i>Aglaia teysmanniana</i></td></tr><tr><th></th><td><i>Aphanamixis borneensis</i></td></tr><tr><th></th><td><i>Aphanamixis polystachya</i></td></tr><tr><th></th><td><i>Aphanamixis sumatrana</i></td></tr><tr><th></th><td><i>Lansium domesticum</i></td></tr><tr><th></th><td><i>Lansium membranaceum</i></td></tr><tr><th></th><td><i>Reinwardtiodendron celebicum</i></td></tr><tr><th></th><td><i>Reinwardtiodendron humile</i></td></tr><tr><th></th><td><i>Reinwardtiodendron kinabaluense</i></td></tr><tr><th></th><td><i>Sphaerosacme decandra</i></td></tr><tr><th>4</th><td><i>Epicharis brevipanicula</i></td></tr><tr><th>(<i>Epicharis</i>)</th><td>Epicharis cumingiana</td></tr><tr><th></th><td>Epicharis cuneata</td></tr><tr><th></th><td>Epicharis densiflora</td></tr><tr><th></th><td><i>Epicharis gillespieana</i></td></tr></tbody></table>
Appendix 3 in Confirmed polyphyly, generic recircumscription and typification of Dysoxylum (Meliaceae), with revised disposition of currently accepted species
<p><b>Appendix 3.</b> Key morphological “spot” characters for the former <i>Dysoxylum</i> s.l. as well as the newly resurrected genera.</p><table><tbody><tr><th>Genus</th><th>Morphological characters</th></tr></tbody><tbody><tr><th><i>Dysoxylum</i> s.l.</th><td>Leaves pinnate; pseudogemmula 0</td></tr><tr><th></th><td>Flowers unisexual; calyx tubular or sepals discrete; petals free or adnate to staminal tube; staminal tube cylindrical to urceolate</td></tr><tr><th></th><td>Seeds anatropous</td></tr><tr><th><i>Dysoxylum</i> s.str.</th><td>Apical leaf-buds stiletto-like Inflorescence spiciform</td></tr><tr><th><i>Didymocheton</i></th><td>Petals adnate to staminal tube</td></tr><tr><th><i>Epicharis</i></th><td>Inflorescence racemose. ramiflorous/cauliflorous Calyx closed, later splitting into irregular lobes and basally circumscissile</td></tr><tr><th><i>Goniocheton</i></th><td>Leaves imparipinnate Fruits white to pink Seeds aril-less, pachychalazal</td></tr><tr><th><i>Prasoxylon</i></th><td>Seeds unitegmic Leaves and seeds with strong odour</td></tr><tr><th><i>Pseudocarapa</i></th><td>Leaves paripinnate Staminal tube cylindrical with appendages Disk annular or patelliform Pollen sheds in tetrads</td></tr></tbody></table>
Appendix 2 in Confirmed polyphyly, generic recircumscription and typification of Dysoxylum (Meliaceae), with revised disposition of currently accepted species
<p><b>Appendix 2.</b> Nucleotide substitution models used in the BI analyses for each marker in the alignment without and with applying Gblocks (Castresana, 2000).</p><table><tbody><tr><th></th><th>Nucleotide substitution model for alignment without Gblocks</th><th>Nucleotide substitution model for alignment using Gblocks</th></tr></tbody><tbody><tr><th>ITS</th><td>GTR+I+Γ (Tavaré, 1986)</td><td>GTR+I+Γ (Tavaré, 1986)</td></tr><tr><th>ETS</th><td>TVM+Γ (Posada, 2003)</td><td>TVM+Γ (Posada, 2003)</td></tr><tr><th><i>trnL-F</i></th><td>TVM+Γ (Posada, 2003)</td><td>HKY (Hasegawa & al., 1985)</td></tr><tr><th><i>rps15-ycf1</i> HKY+Γ (Hasegawa & al., 1985)</th><td>—*</td></tr></tbody></table>
Silk-borne chemicals of spider nuptial gifts elicit female gift acceptance
<p>Chemical communication is important in a reproductive context by conveying information used for mate recognition and/or assessment during courtship and mating. Spider silk is common as vehicle for chemical communication between the sexes. However, despite being well described in females, male silk-borne chemicals remain largely unexplored. Males of the spider Pisaura mirabilis silk-wrap prey (i.e. nuptial gifts) that is offered to females during courtship and eaten by the female during copulation. Interestingly, rejected males often add more silk to their gift which leads to mate acceptance, suggesting presence of silk-borne chemicals that facilitate female gift acceptance. To test this hypothesis, we offered females standardised gifts covered with male silk that was either washed in solvents or unwashed, respectively to remove or not any chemically active components. We scored female gift acceptance, and as expected in the case chemicals that mediate female mating behaviour are present in male silk, females were more likely to accept gifts covered with unwashed silk. Our findings suggest that silk-borne chemicals of nuptial gifts prime female responses, potentially signalling male quality or manipulating females into mating beyond their interests given the occurrence of male cheating behaviour via nutritionally worthless gifts in this system.</p>
COMPASS-DOE/rf-synthesis: LOM accepted version
<p>This code and data for conducting analysis of parameter decision impacts on Random Forest model model performance and interpretation. Github associated with 10.1002/lom3.10523.</p>
Interactive Widget – Acceptance of autonomous vehicles dataset exploration
<p><strong><a href="https://research-data.shinyapps.io/CAV_Acceptance/">https://research-data.shinyapps.io/CAV_Acceptance/</a></strong></p> <p>The following widget gives citizens access to data collected with the Connected and Autonomous Vehicle Acceptance Assessment Tool (CAVA) developed in the PAsCAL project (Public acceptance of Connected and Autonomous vehicles). The aim of the CAVA is to measure autonomous vehicle acceptance via evaluation of expected autonomous vehicle consequences. A survey was employed with over 5000 participants from 11 countries.</p>
Data for study "'Conditional Acceptance' (additional experiments required): A scoping review of recent evidence on key aspects of Open Peer Review"
<p>Dataset for study "‘Conditional Acceptance’ (additional experiments required): A scoping review of recent evidence on key aspects of Open Peer Review", 2022 preprint by Tony Ross-Hellauer and Serge Horbach.</p> <p>Dataset includes excel file with 10 sheets showing systematic literature search (per PRISMA-SCR protocol) of academic databases (Web of Science, Scopus), snowballing and web-search to identify 52 studies on key aspects of Open Peer Review published from Jan 2017 until May 2022.</p> <p><strong>Study Abstract: </strong>Diverse efforts are underway to reform the journal peer review system. Combined with growing interest in Open Science practices, Open Peer Review (OPR) has become of central concern to the scholarly community. However, what Open Peer Review is understood to encompass and how effective some of its elements are in meeting the expectations of the peer review system, are uncertain. This scoping review updates previous efforts to summarise research on OPR to date. Following the PRISMA methodological framework, it addresses the question: “What evidence has been reported in the scientific literature from 2017 to date regarding uptake, attitudes, and efficacy of two key aspects of Open Peer Review (Open Identities and Open Reports)?” The review identifies, analyses and synthesises 52 studies matching inclusion criteria, finding that OPR is growing, but still far from common practice. Our findings indicate positive attitudes towards Open Reports and more sceptical approaches to Open Identities. Changes in reviewer behaviour seem limited. and no evidence for lower acceptance rates of review invitations or slower turnaround times is reported. Concerns about power dynamics and potential backfiring on critical reviews are in need of further experimentation. We conclude that elements of OPR seem to be gaining acceptance, but more experimentation is needed. Evidence still mainly consists of either survey data or case studies of individual or few journals, not allowing for generalisability across fields and journals, and revealing no studies which compare the quality of review under Open Identities or Open Reports versus other modes of peer review.</p>
Reducing the number of accepted species in Aspergillus series Nigri
<p>The <em>Aspergillus</em> series <em>Nigri</em> contains biotechnologically and medically important species. They can produce hazardous mycotoxins, which is relevant due to the frequent occurrence of these species on foodstuffs and in the indoor environment. The taxonomy of the series has undergone numerous rearrangements, and currently, there are 14 species accepted in the series, most of which are considered cryptic. Species-level identifications are, however, problematic or impossible for many isolates even when using DNA sequencing or MALDI-TOF mass spectrometry, indicating a possible problem in the definition of species limits or the presence of undescribed species diversity. To re-examine the species boundaries, we collected DNA sequences from three phylogenetic markers (<em>benA</em>, <em>CaM</em> and <em>RPB2</em>) for 276 strains from series <em>Nigri</em> and generated 18 new whole-genome sequences. With the three-gene dataset, we employed phylogenetic methods based on the multispecies coalescence model, including four single-locus methods (GMYC, bGMYC, PTP and bPTP) and one multilocus method (STACEY). From a total of 15 methods and their various settings, 11 supported the recognition of only three species corresponding to the three main phylogenetic lineages: <em>A</em>. <em>niger</em>, <em>A</em>. <em>tubingensis</em> and <em>A</em>. <em>brasiliensis</em>. Similarly, recognition of these three species was supported by the GCPSR approach (Genealogical Concordance Phylogenetic Species Recognition) and analysis in DELINEATE software. We also showed that the phylogeny based on <em>benA</em>, <em>CaM</em> and <em>RPB2</em> is suboptimal and displays significant differences from a phylogeny constructed using 5 752 single-copy orthologous proteins; therefore, the results of the delimitation methods may be subject to a higher than usual level of uncertainty. To overcome this, we randomly selected 200 genes from these genomes and performed ten independent STACEY analyses, each with 20 genes. All analyses supported the recognition of only one species in the <em>A</em>. <em>niger</em> and <em>A</em>. <em>brasiliensis</em> lineages, while one to four species were inconsistently delimited in the <em>A</em>. <em>tubingensis</em> lineage. After considering all of these results and their practical implications, we propose that the revised series <em>Nigri</em> includes six species: <em>A</em>. <em>brasiliensis</em>, <em>A</em>. <em>eucalypticola</em>, <em>A</em>. <em>luchuensis</em> (syn. <em>A</em>. <em>piperis</em>), <em>A</em>. <em>niger</em> (syn. <em>A</em>. <em>vinaceus</em> and <em>A</em>. <em>welwitschiae</em>), <em>A</em>. <em>tubingensis</em> (syn. <em>A</em>. <em>chiangmaiensis</em>, <em>A</em>. <em>costaricensis</em>, <em>A</em>. <em>neoniger</em> and <em>A</em>. <em>pseudopiperis</em>) and <em>A</em>. <em>vadensis</em>. We also showed that the intraspecific genetic variability in the redefined <em>A</em>. <em>niger</em> and <em>A</em>. <em>tubingensis</em> does not deviate from that commonly found in other aspergilli. We supplemented the study with a list of accepted species, synonyms and unresolved names, some of which may threaten the stability of the current taxonomy.</p>
Health versus environmental benefits: Does additional information influence consumer acceptance of pulse-based spreads?
<p>Despite the known health benefits and the potential for substituting less environmentally sustainable consumed foods such as meat, the current intake of pulses in developed countries remains less than recommended. Barriers are related to sensory characteristics and lack of knowledge about preparation, while drivers of environmental benefits are intangible. The aim of this study was to investigate the effect of additional information about health or environmental benefits of pulses on the acceptance of novel pulse-based products from chickpeas, black beans, and faba beans. Perceptions of these pulse-based spreads in a blind and informed stage were assessed with 202 consumers in urban and sub-urban areas of Denmark. In general, the familiar chickpea spread followed by the relatively most unfamiliar black bean spread was liked the most. Only for these two products, additional information increased hedonic perception, regardless of the context (health or environmental benefits). If consumers did not like the spread, as found for the faba bean spread, providing additional information did not significantly alter this perception. Participants’ preferences and willingness-to-pay (WTP) in a discrete choice experiment (DCE) was corresponding with hedonic scores while providing additional information was found to increase the WTP. These findings suggest that extrinsic cues such as health or environmental benefits may only be useful in products with an acceptable baseline taste profile. Moreover, black beans might be investigated as a promising source for further product development due to their acceptance by consumers besides being the comparably most unfamiliar pulse type.</p> <p> </p>
Social Acceptance Data for NBS
<p>The data is collected for METU Forest in Ankara, Turkey; Tisza River Bank in Szeged, Hungary; Forest Garden in Alcalá de Henares, Spain; and Quarries in Milan, Italy to determine the factors of social acceptance as a task for Nature4Cities Horizon 2020 project.</p>
Dataset and Application of Algorithms of "Towards a More Set of Acceptance Criteria"
<p>This dataset contains the requirements of the Corona Warn App together with the results of the application of the algorithms described in "Towards a More Complete Set of Acceptance Criteria Using User Story Similarity" on this data set.</p>
On Constructing Limits-of-Acceptability in Watershed Hydrology using Decision Trees
<p>This submission contains the hydrological data used in the study.</p> <p>Use the following code in python to access the data</p> <p>Load_data = pickle.load( open(filename,'rb')) # filename should be specified along with full file path; pandas version 1.3.5 might be required to open this file</p>
Accuracy, acceptability, and feasibility of diagnostic tests for the screening of Strongyloides stercoralis in the field: the ESTRELLA study
<p>Raw data from the diagnostic study ESTRELLA. </p> <p>The primary objective of this study was to estimate the accuracy of five tests - a recombinant antigen- rapid diagnostic test (RDT); a crude antigen-based ELISA (Bordier ELISA); an ELISA based on two recombinant antigens (Strongy Detect ELISA); a modified Baermann method; an in-house real-time PCR for <em>Strongyloides stercoralis</em> infection. Secondary objectives were acceptability and feasibility of use in an endemic area.</p> <p>The study was carried out in remote villages of Ecuador</p>
Assessing the prevalence of Female Genital Schistosomiasis and comparing the acceptability and performance of health worker-collected and self-collected cervical-vaginal swabs using PCR testing among women in North-Western Tanzania: the ShWAB study
<p>Female genital schistosomiasis (FGS) is a severe neglected disease, caused by infection with <em>Schistosoma haematobium</em>. The WHO has prioritized the improvement of diagnostics for FGS and previous studies have explored the PCR-based detection of <em>Schistosoma</em> DNA on genital specimens, with encouraging results. We aimed to determine the prevalence of FGS among women living in an endemic district in North-western Tanzania, applying and preliminary comparing self-collected and operator-collected cervical-vaginal swabs followed by PCR, and to assess the acceptability of these sampling procedures.</p>
Dataset: Experimental vignette-based survey data on NPI acceptance during travel (SNSF NRP 78)
<p>The data set contains rating scales on the willingness of the Swiss resident population to take risks in connection with touristic travel during the coronavirus pandemic. The data includes a selection of items of the Domain-Specific Risk-Taking Scale (DOSPERT) (Weber et al., 2002), the health belief model (HBM; Rosenstock, 1974, see also Champion & Skinner, 2008), and the theory of planned behaviour (Ajzen, 1991) to predict tourists’ intentions to travel under implementation of specific NPIs and the vaccination passport. The dataset contains data of N = 2’018 participants that have been collected between March 29 and April 9, 2021, based on a representative quota sampling (language region, age, gender). The data were collected based on a computer assisted web interview (CAWI) of a leading Swiss market research company. The following travel-related protective measures were tested regarding the constructs of the above-mentioned theories:</p> <ul> <li>Vaccination passport</li> <li>Surgical masks</li> <li>Travel warnings</li> <li>Rapid Testing at points of entry</li> <li>FFP2 masks</li> <li>PCR tests taken 72h before travel</li> <li>10-day quarantine of returning travelers from high-risk areas</li> <li>14-day quarantine of inbound travelers</li> </ul> <p>Ajzen, I. (1991). The theory of planned behavior. <em>Organizational Behavior and Human Decision Processes, 50</em>, 179-211. <a href="https://doi.org/10.1016/0749-5978(91)90020-T">https://doi.org/10.1016/0749-5978(91)90020-T</a></p> <p>Rosenstock, I. M., (1974). The health belief model and preventive health behavior. <em>Health Education Monographs,</em> <em>2</em>, 354-386. <a href="https://doi.org/10.1177/109019817400200405">https://doi.org/10.1177/109019817400200405</a></p> <p>Weber, E. U., Blais, A.-R., & Betz, N. E. (2002). A domain-specific risk-attitude scale: Measuring risk perceptions and risk behaviors. <em>Journal of Behavior Decision Making, 15</em>, 263-290. <a href="https://doi.org/10.1002/bdm.414">https://doi.org/10.1002/bdm.414</a></p> <p>Champion, V. L., & Skinner, C. S. (2008). The health belief model. In K. Glanz, B. K. Rimer, & K. Viswanath (Eds.), <em>Health Behavior and Health Education. Theory, Research, and Practice</em> (4 ed, pp. 45-65). San Francisco, CA: Jossey-Bass.</p>
The impact of information disclosure on consumer acceptance of genome-edited foods in Japan
<p>Genome editing is promising to accelerate the rate of genetic progress by enabling the replacement of the germ cell lineage of commercial breeding animals with cells derived from genetically elite lines. This is an efficient way to produce foods and reduce food waste. However, foods using genome editing are not very familiar in Japan. The purpose of this study is to investigate consumer acceptance of genome-edited foods and the impact of information disclosure on it. We constructed an acceptance model for genome-edited foods and investigate the amount of willingness to pay for the level of information disclosure. Genome-edited food acceptance model illustrated that information credibility and perceived usefulness were significantly related to the consumer acceptance of genome-edited foods. WTP of functional information label is 76 JPY (approx. 0.69USD), and that of genome-edited food label is 11 JPY (approx. 0.1USD). For genome editing technology description, it was 38 JPY (approx. 0.345USD). The most important factor is functional information. Since this study is an early study in the genome-edited food acceptance model, we believe that there is room for various discussions in the future.</p>
L3Pilot Global User Acceptance Survey, First Phase Data
<p>The L3Pilot Global User Acceptance Survey investigated the acceptance of SAE Level 3 (L3) conditionally automated cars. Survey data was collected in two phases. This dataset contains the data from the first phase of the survey with responses collected from 17 countries on five continents.</p> <p>Description.pdf contains information about the survey methodology and coding of the variables. For further information about the survey, please consult L3Pilot deliverable D7.1 ‘Annual quantitative survey about user acceptance towards ADAS and vehicle automation’.</p> <p>If you use the dataset, please cite it as: L3Pilot (2021). L3Pilot Global User Acceptance Survey, First Phase Data. https://doi.org/10.5281/zenodo.5255949</p> <p>For further information, please contact: <a href="mailto:user-survey@eict.de">user-survey@eict.de</a></p>
Raw data for publication: Cao et al. 2023. GCB-Bioenergy (accepted for publication).
<p>Raw data for publication: Viet Dang Cao, Baskaran Kannan, Guangbin Luo, Hui Liu, John Shanklin, and Fredy Altpeter<span>. </span>2023. Triacylglycerol, total fatty acid and biomass accumulation of metabolically engineered energycane grown under field conditions. GCB-Bioenergy (accepted for publication).</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.