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348 results for “Core data”
LTER Epibenthos Sampling Data for North Inlet Estuary, Georgetown, South Carolina from 1981 to 1992, North Inlet LTER (Reformatted to a Darwin Core Archive)
This data package is formatted as a Darwin Core Archive (DwC-A, event core). For more information on Darwin Core see https://www.tdwg.org/standards/dwc/. This Level 2 data package was derived from the Level 1 data package found here: https://pasta.lternet.edu/package/metadata/eml/edi/354/2, which was derived from the Level 0 data package found here: https://pasta.lternet.edu/package/metadata/eml/knb-lter-nin/7/1. The abstract below was extracted from the Level 0 data package and is included for context: This data package consists of Epibenthos Sampling for North Inlet Stations Bread and Butter Creek, from 1981 to 1992, and Debidue Creek from 1981 to 1984, The purpose of the long term monitoring of Epibenthos was to determine seasonal and inter-annual changes in the taxonomic/life stage composition and abundance of small motile epibenthic invertebrates and fishes (1-20 mm in length) in the major sub- tidal habitats of North Inlet estuary.
Macrobenthos Sampling data for the North Inlet Estuary, Georgetown,South Carolina, from 1981 to 1992 North Inlet LTER (Reformatted to a Darwin Core Archive)
This data package is formatted as a Darwin Core Archive (DwC-A, event core). For more information on Darwin Core see https://www.tdwg.org/standards/dwc/. This Level 2 data package was derived from the Level 1 data package found here: https://pasta.lternet.edu/package/metadata/eml/edi/353/2, which was derived from the Level 0 data package found here: https://pasta.lternet.edu/package/metadata/eml/knb-lter-nin/9/1. The abstract below was extracted from the Level 0 data package and is included for context: This data package consists of Macrobenthos Sampling Data for North Inlet Stations Bread and Butter Creek from 1981 to 1992, and Debidue Creek from 1981 to 1984, North Inlet LTER. The purpose of this study was to document the composition and abundance of macrobenthic subtidal populations over time at one mud and one sand site. Macrobenthos was defined here as those animals retained on a 0.5 mm mesh screen.
Long Term Mammal Data from Powdermill Biological Station 1979-1999 (Reformatted to a Darwin Core Archive)
This data package is formatted as a Darwin Core Archive (DwC-A, event core). For more information on Darwin Core see https://www.tdwg.org/standards/dwc/. This Level 2 data package was derived from the Level 1 data package found here: https://pasta.lternet.edu/package/metadata/eml/edi/356/2, which was derived from the Level 0 data package found here: https://pasta.lternet.edu/package/metadata/eml/knb-lter-vcr/67/20. The abstract below was extracted from the Level 0 data package and is included for context: This is a 20-year record of small mammal trapping from the Powdermill Biological Station, Rector, PA 15677 collected by Joseph F. Merritt. It is included here as a comparative source of small mammal data.
Tree Core Increment Data, Watershed 4, Hubbard Brook Experimental Forest, 1985-1986
Time series of annual tree ring increments were collected on Watershed 4 during the winter of 1985-1986 for trees of four species: beech, white ash, yellow birch, and sugar maple. The purpose of the study was to compare these time series with a selection of measured and derived environmental variables to develop a more sensitive model of tree diameter growth. These data were gathered as part of the Hubbard Brook Ecosystem Study (HBES). The HBES is a collaborative effort at the Hubbard Brook Experimental Forest, which is operated and maintained by the USDA Forest Service, Northern Research Station.
Data from: Quantifying shape and ecology in avian pedal claws: the relationship between the bony core and keratinous sheath
Terrestrial tetrapods use their claws to interact with their environments in a plethora of ways. Birds in particular have developed a diversity of claw shapes since they are often not bound to terrestrial locomotion and have heterogeneous body masses ranging several orders of magnitude. Numerous previous studies have hypothesized a connection between pedal claw shape and ecological mode in birds, yet have generated conflicting results, spanning from clear ecological groupings based on claw shape to a complete overlap of ecological modes. The majority of these studies have relied on traditional morphometric arc measurements of keratinous sheaths and have variably accounted for likely confounding factors such as body mass and phylogenetic relatedness. To better address the hypothesized relationship between ecology and claw shape in birds, we collected 580 radiographs allowing visualization of the bony core and keratinous sheath shape in 21 avian orders. Geometric morphometrics was used to quantify bony core and keratinous sheath shape and was compared to results using traditional arc measurements. Neither approach significantly separates bird claws into coarse ecological categories after integrating body size and phylogenetic relatedness; however, some separation between ecological groups is evident and we find a gradual shift from the claw shape of ground-dwelling birds to those of predatory birds. Further, the bony claw core and keratinous sheath are significantly correlated, and the degree of functional integration does not differ across ecological groups. Therefore, it is likely possible to compare fossil bony cores with extant keratinous sheaths after applying corrections. Finally, traditional metrics and geometric morphometric shape are significantly, yet loosely correlated. Based on these results, future workers are encouraged to use geometric morphometric approaches to study claw geometry and account for confounding factors such as body size, phylogeny, and individual variation prior to predicting ecology in fossil taxa.
AQUACOSM VIMS-Ehux – Core data
<p>The cosmopolitan coccolithophore <i>Emiliania huxleyi</i> is a unicellular alga that forms massive oceanic blooms covering thousands of square kilometers (Tyrrell & Merico 2004). The intricate calcite exoskeleton of <i>E. huxleyi</i> accounts for ~1/3 of total marine CaCO<sub>3</sub> production (Monteiro et al. 2016). <i>E. huxleyi</i> blooms are an important source of DMS, which is, by far, the most abundant volatile sulfur compound in the surface ocean and the best studied aerosol precursor (Simó 2001) with a significant climate-regulating role that enhances cloud formation (Alcolombri et al. 2015; Simó 2001). Biotic interactions that regulate the fate of these blooms play a profound role in determining carbon and nutrient cycling in the ocean and feedback to the atmosphere. Annual <i>E. huxleyi</i> spring blooms are frequently terminated following infection by a specific large dsDNA virus (EhV) that belongs to the Coccolithovirus group (Schroeder et al. 2002). Despite the huge ecological importance of host-virus interactions, the ability to assess their ecological impact is limited to questions that focus mainly on quantification of viral abundance and diversity in a reductionist manner.</p> <p>The project in which this dataset was collected is a holistic approach to untangle the complexity in alga-virus-bacterium interactions during an <i>E. huxleyi</i> bloom, their effect on the metabolome of the phycosphere, and their possible implications to C and S cycles. The project took place for 24 days, including daily sampling for various biological and physiochemical parameters. Flow cytometry was used to monitor different populations of phytoplankton, bacteria and virus-like particles (VLP). Additionally, physiochemical properties of the water such as salinity, temperature and nutrient concentrations were acquired, as well as viral abundances estimated by qPCR. These data compose the contextual data for various scientific papers.</p>
Data from: Integrating population genetics to define conservation units from the core to the edge of Rhinolophus ferrumequinum western range
The greater horseshoe bat (<i>Rhinolophus ferrumequinum</i>) is among the most widespread bat species in Europe but it has experienced severe declines, especially in Northern Europe. This species is listed Near Threatened in the European IUCN Red List of Threatened Animals and it is considered to be highly sensitive to human activities and particularly to habitat fragmentation. Therefore, understanding the population boundaries and demographic history of populations of this species is of primary importance to assess relevant conservation strategies. In this study, we used 17 microsatellite markers to assess the genetic diversity, the genetic structure and the demographic history of <i>R. ferrumequinum</i> colonies in the western part of its distribution. We identified one large population showing high levels of genetic diversity and large population size. Lower estimates were found in England and northern France. Analyses of clustering and isolation by distance suggested that the Channel and the Mediterranean seas could impede <i>R. ferrumequinum</i> gene flow. These results provide important information to improve the delineation of <i>R. ferrumequinum</i> management units. We suggest that a large management unit corresponding to the population ranging from Spanish Basque country to northern France must be considered. Particular attention should be given to mating territories as they seem to play a key role in maintaining the high levels of genetic mixing between colonies. Smaller management units corresponding to English and northern France colonies must also be implemented. These insular or peripheral colonies could be at higher risk of extinction in a near future.
Survey of Core Facilities Raw Data
<p>Recently, it has become evident that academic research faces issues with the reproducibility of research data. As Core Facilities (CFs) have a central position in the research infrastructure they are able to promote and disseminate good research standards through their users. To identify the most important factors for research quality, we polled 253 CFs across Europe about their practices and analysed in detail the interaction process between CFs and their users, from the first contact to the publication of the results. Although the survey showed that CFs aim to train and advise their users, it highlighted the following areas, the improvement of which would directly increase research quality: 1) motivating users to follow the advice and procedures for best research practice, 2) providing clear guidance on data management practices, 3) improving communication along the whole research process and 4) clearly defining the responsibilities of each party.</p>
Rwenzori colobus core unit SNA data - association scans between units, simple association index per dyad, male dispersal events, rainfall and food availability
<p>1. Multi-level societies are complex, nested social systems where basic social groups (i.e., core units) associate in a hierarchical manner, allowing animals to adjust their group sizes in response to variables such as food availability, predation, or conspecific threat. These pressures fluctuate over time and examining the extent to which this variation affects the clustering of core units into different tiers may be instrumental in understanding the evolution of multi-level societies.</p> <p>2. The goal of our study was to determine the degree of temporal variability in inter-unit associations in a multi-level society of Rwenzori Angolan colobus monkey (<i>Colobus angolensis ruwenzorii</i>), and to determine the social and ecological factors that underlie association patterns. The <i>C. a. ruwenzorii</i> multi-level society consists of at least three tiers, with core units clustering into clans that share a home range in a band tier.</p> <p>3. We performed social network analyses on 21 months of association data from 13 core units (totaling 139 identifiable individuals) at Lake Nabugabo, Uganda. We described the patterns of variation in core-unit associations over time and investigated how changes in rainfall, food availability, and inter-unit dispersals were correlated with these associations over the short-term (month to month) and long-term (year to year).</p> <p>4. Although clans were relatively stable, larger-scale changes in association patterns included the formation of an all-male unit and the transfer of one core unit between clans (within the band tier). Seasonally, core units associated significantly more when fruit, their preferred food source, was abundant (i.e., social networks were denser and more clustered) and there was no direct effect of rainfall seasonality or young leaf availability. Male dispersals also occurred more during periods of high fruit availability, suggesting that greater band cohesion allowed males to prospect and transfer between core units. Once males transferred, their previous and new units associated significantly more with one another than with other core units for 1-2 months post-dispersal. The dispersal of five males from one core unit to another in a different clan co-occurred with this core unit switching its clan affiliation.</p> <p>5. By examining temporal shifts in social network structure among core units, this study shows the inter-connected roles that food availability and dispersal have in shaping the <i>C. a. ruwenzorii</i> multi-level social system. Our findings highlight how ecological conditions can drive association patterns, impact interunit relationships, and influence social organization.</p>
Data from: Phylogeny and biogeography of the core babblers (Aves: Timaliidae)
The avian family Timaliidae is a species rich and morphologically diverse component of African and Asian tropical forests. The morphological diversity within the family has attracted interest from ecologists and evolutionary biologists, but systematists have long suspected that this diversity might also mislead taxonomy, and recent molecular phylogenetic work has supported this hypothesis. We produced and analyzed a dataset of six genes and almost 300 individuals to assess the evolutionary history of the family. Although phylogenetic analysis required extensive adjustment of program settings, we ultimately produced a well-resolved phylogeny for the family. The resulting phylogeny provided strong support for major subclades within the family but extensive paraphyly of genera. Only three genera represented by more than three species were monophyletic. Biogeographic reconstruction indicated a mainland Asian origin for the family and most major clades. Colonization of Africa, Sundaland, and the Philippines occurred relatively late in the family's history and was mostly unidirectional. Several putative babbler genera, such as Robsonius, Malia, Leonardina, and Micromacronus are only distantly related to the Timaliidae.
Dissection of core promoter syntax through single nucleotide resolution modeling of transcription initiation (CLIPNET data)
<div>This contains data necessary to reproduce the figures in the CLIPNET paper (preprint <a href="https://www.biorxiv.org/content/10.1101/2024.03.13.583868">here</a>) as well as processed data used to train and evaluate CLIPNET. To preserve subdirectory structure, we've packaged the data into tar archives. Please refer to the README documents in our manuscript GitHub repo for more details on file contents: <a href="https://github.com/Danko-Lab/clipnet_paper/">https://github.com/Danko-Lab/clipnet_paper/</a></div> <div> </div> <div>Pretrained CLIPNET models are archived separately at <a href="../doi/10.5281/zenodo.10408622">DOI 10.5281/zenodo.10408622</a></div> <div> </div> <div>V5: Fixed bug in calculation of profile attribution scores causing them to be off by a factor of exactly 500. Genome-wide DeepSHAP tracks & TF-MoDISco tracks have been accordingly updated. I have not updated the individual examples, as these can be quickly fixed by simply multiplying by 500 when plotting. Additionally, I have uploaded profile and quantity motif calls, which contain genome-wide seqlet annotations. The columns in these files are [chrom, start, end, peak_idx, motif_annotation].</div> <div>V4: Uploaded individual bigWigs. These have been lifted over using CrossMap from the original hg19 (GSE110638) to hg38 and RPM normalized.</div> <div>V3: Final version prior to journal submission. Don't recall exact details of what's changed.</div> <div>V2: evaluation_metrics.tar.gz and evaluation_data.tar.gz have been replaced. Previously, we benchmarked the models by treating each peak in each individual as a separate data point. Here, we instead predicted from the reference genome and compared against the averaged bigWigs.</div>
Data for figures in the paper "Parity Violation in Resonant Inelastic Soft X-Ray Scattering at Entangled Core Holes"
<p>This dataset can be used to recreate the figures in the paper "Parity Violation in Resonant Inelastic Soft X-Ray<br>Scattering at Entangled Core Holes" (doi to be published when available). Additional data can be provided upon reasonable request to the corresponding author (Johan Söderström, Johan.Soderstrom@physics.uu.se)</p><p>November 13: Added new experimental data for Fig. 2B (the old experimental data is still available). The data is the same but binned somewhat differently and the background is differently subtracted. Use the new version if you want to reuse some of this data.</p>
Data - Krieg et al. Greater ecophysiological stress tolerance in the core environment than in extreme environments of wild chickpea (Cicer reticulatum)
<p>Data used in analyses and code to produce figures.</p>
Data to support: Anthropogenic influence on tropospheric reactive bromine since the pre-industrial: Implications for ice-core bromine trends
<p>Tropospheric reactive bromine (Br<sub>y</sub>) influences the oxidation capacity of the atmosphere by acting as a sink for ozone and nitrogen oxides. Aerosol acidity plays a crucial role in Br<sub>y</sub> abundances through acid-catalyzed debromination from sea-salt-aerosol, the largest global source. Bromine concentrations in a Russian Arctic ice-core, Akademii Nauk, show a 3.5-fold increase from pre-industrial (PI) to the 1970s (peak acidity, PA), and decreased by half to 1999 (present day, PD). Ice-core acidity mirrors this trend, showing robust correlation with bromine, especially after 1940 (<em>r</em>=0.9). Model simulations considering anthropogenic emission changes alone show that atmospheric acidity is the main driver of Br<sub>y</sub> changes, consistent with the observed relationship between acidity and bromine. The influence of atmospheric acidity and Br<sub>y</sub> should be considered in interpretation of ice-core bromine trends.</p>
Radiationless Decay Spectrum of O 1s Double Core Holes in Liquid Water - data
<p>Data set pertaining to the publication "Radiationless Decay Spectrum of O 1s Double Core Holes in Liquid Water", published in <a href="https://doi.org/10.1063/5.0205994"><em>J. Chem. Phys.</em> 160, 194503 (2024)</a>.</p> <p>The publication describes results on the Auger emission of double core hole states created by single photon photo-double-ionization, explored experimentally by liquid jet electron spectra and via simulations. Here we provide the underlying experimental data including metadata, ascii representations of the traces shown in the figures, and the coordinates used in the simulations.</p> <p>Files with extension .h5 are hdf5-files structured according to the NeXus standard v2022.07, see<br>https://www.nexusformat.org/<br>https://fairmat-experimental.github.io/nexus-fairmat-proposal/50433d9039b3f33299bab338998acb5335cd8951/mpes-structure.html<br>NeXus data files can be opened with any software capable of opening hdf5-structured files. The following viewers are adapted to the specifics of the NeXus data format:<br>* nexpy (distributed with python)<br>* https://h5web.panosc.eu/h5wasm (web-based NeXus viewer maintained by the European Photon and Neutron Open Science Cloud-consortium)<br>Additionally, some properties of our liquid jet sample environment are described by extensions to standard NeXus explained in a notes-section in each file.</p> <p>In each NeXus file-entry, two types of spectra are shown:<br>1. Sweep-averaged spectra, integrated over the non-dispersive coordinate of our detector ('data').<br>2. As-measured data ('raw').</p> <p>Files with extension .txt or with extension .xyz are tab-separated or space-separated ascii-files. Files with extension .asc are comma-separated ascii-files. Files with extension .zip are compressed multi-file archives, MIME-type application/zip.</p> <p>The following files are provided:</p> <p> </p> <table> <tbody> <tr> <td>Filename</td> <td>Content</td> </tr> <tr> <td> <div><a href="../api/records/10523681/draft/files/DataFig2_3_4.zip/content" target="_blank" rel="noopener noreferrer">DataFig2_3_4.zip</a></div> </td> <td>Ascii representation of the experimental data traces shown in Fig.s 3, 4 and 5</td> </tr> <tr> <td> <div><a href="../api/records/10523681/draft/files/dataFig5_6_7.zip/content" target="_blank" rel="noopener noreferrer">dataFig5_6_7.zip</a></div> </td> <td>Ascii representation of the simulated traces shown in Fig.s 6, 7 and 8</td> </tr> <tr> <td> <div><a href="../api/records/10523681/draft/files/DataSFig1-4.zip/content" target="_blank" rel="noopener noreferrer">DataSFig1-4.zip</a></div> </td> <td>Ascii representation of the experimental data traces shown in Supplementary Fig.s 1,3 and 4</td> </tr> <tr> <td> <div><a href="../api/records/10523681/draft/files/DataSFig5.zip/content" target="_blank" rel="noopener noreferrer">DataSFig5.zip</a></div> </td> <td>Ascii representation of the experimental data traces shown in Supplementary Fig. 5. Data <br>are shown before normalization to unity.</td> </tr> <tr> <td> <div><a href="../api/records/10523681/draft/files/DataSFig6-8.zip/content" target="_blank" rel="noopener noreferrer">DataSFig6-8.zip</a></div> </td> <td>Ascii representation of the experimental data traces shown in Supplementary Fig.s 6,7 and 8</td> </tr> <tr> <td><a href="../api/records/10523681/draft/files/dch-1812.h5/content" target="_blank" rel="noopener noreferrer">dch-1812.h5</a></td> <td>Experimental data, december 2018 campaign.</td> </tr> <tr> <td><a href="../api/records/10523681/draft/files/dch-1904s1.h5/content" target="_blank" rel="noopener noreferrer">dch-1904s1.h5</a></td> <td>Experimental data, april 2019 campaign, data set 1.</td> </tr> <tr> <td><a href="../api/records/10523681/draft/files/dch-1904s2.h5/content" target="_blank" rel="noopener noreferrer">dch-1904s2.h5</a></td> <td>Experimental data, april 2019 campaign, data set 2.</td> </tr> <tr> <td><a href="../api/records/10523681/draft/files/dch-1909h2o.h5/content" target="_blank" rel="noopener noreferrer">dch-1909h2o.h5</a></td> <td>Experimental data, september 2019 campaign.</td> </tr> <tr> <td><a href="../api/records/10523681/draft/files/dch-1909d2o.h5/content" target="_blank" rel="noopener noreferrer">dch-1909d2o.h5</a></td> <td>Experimental data, september 2019 campaign, deuterated water.</td> </tr> <tr> <td><a href="../api/records/10523681/draft/files/dch-2009h2o.h5/content" target="_blank" rel="noopener noreferrer">dch-2009h2o.h5</a></td> <td>Experimental data, september 2020 campaign.</td> </tr> <tr> <td><a href="../api/records/10523681/draft/files/dch-2009d2o.h5/content" target="_blank" rel="noopener noreferrer">dch-2009d2o.h5</a></td> <td>Experimental data, september 2020 campaign, deuterated water.</td> </tr> <tr> <td><a href="../api/records/10523681/draft/files/optimized_pentamer.xyz/content" target="_blank" rel="noopener noreferrer">optimized_pentamer.xyz</a></td> <td>Cartesian coordinates of the water pentamer used for the simulations, in Å.</td> </tr> </tbody> </table> <p> </p> <p>In case you have any questions regarding this data set please contact: Uwe Hergenhahn, uhe@fhi.mpg.de .</p>
Data: Core-periphery detection in multilayer networks
Open the record for dataset details and reuse information.
Ent1-mNeonGreen and Abp1-mTq TIRF Raw data from "Sla2 is a core interaction hub for Clathrin Light Chain and the Pan1/End3/Sla1 Complex"
<p>This dataset is raw TIRF movies (as ND2 files) of data shown in Figure 4e of the manuscript "Sla2 is a core interaction hub for Clathrin Light Chain and the Pan1/End3/Sla1 Complex" in BioXiv (https://doi.org/10.1101/2024.11.14.623549) </p> <p><br>In this repository, you will find 20 different movies taken over two microscopy sessions for Ent1-mNeonGreen/Abp1-mTurquoise2 for yeast cells expressing Sla2-WT and two different mutants (called Site1 and Site2 mutants). </p> <p><br>How is it called in the repository / In the manuscript<br>Sla2-WT - Sla2 - WT<br>Sla2-dYYR - Sla2 - ΔSite2<br>Sla2-d515 - Sla2 - ΔSite1</p> <p>Data relating to experimental conditions can be found in https://doi.org/10.1101/2024.11.14.623549</p>
North Sea Core Thin Section Data pt 1
<p>Thin section scans of core samples from key North Sea lithologies, across the Southern, Central and Northern North Sea Basins. Please visit https://www.northseacore.co.uk/data for more information.</p> <p>The scanned images and supporting files can be viewed with the Olympus OlyVia Viewer software. This is third party software and requires the user to register. All thin sections have been scanned in Bright Field (BF), Plane (PPL) and Cross Polarised Light (XPL), and Cross Polarized Light with Luminesce (XPL+L). Full magnification is 10x.</p> <p>Part 1 of the data includes;</p> <ul> <li>15-14a-3 Triassic</li> <li>16-29a-2X Lower Cretaceous</li> <li>16-29a-2X Paleocene</li> <li>16-29a-A4 Upper Cretaceous</li> <li>21-16-3 Upper Jurassic</li> <li>21-20b-3 Eocene</li> <li>44-23-7 Upper Carboniferous</li> <li>47-15-1X Zechstein Permian</li> </ul>
North Sea Core Thin Section Data pt 2
<p>Thin section scans of core samples from key North Sea lithologies, across the Southern, Central and Northern North Sea Basins. Please visit https://www.northseacore.co.uk/data for more information.</p> <p>The scanned images and supporting files can be viewed with the Olympus OlyVia Viewer software. This is third party software and requires the user to register. All thin sections have been scanned in Bright Field (BF), Plane (PPL) and Cross Polarised Light (XPL), and Cross Polarized Light with Luminesce (XPL+L). Full magnification is 10x.</p> <p>Part 2 of the data includes;</p> <ul> <li>49-06a-4 Triassic</li> <li>49-11a-4 Rotliegend Permian</li> <li>211-08c-4Z Upper Jurassic</li> <li>211-16-4 Zechstein Permian</li> <li>211-23-A18 Middle Jurassic</li> <li>211-23-A38 Middle Jurassic</li> <li>211-23-W1Z Middle Jurassic</li> <li>211-23b-12 Middle Jurassic</li> <li>211-23d-18 Middle Jurassic</li> </ul>
Hydrogen isotope data of DN-1 core
<p>Exploring the processes involved with hydroclimate changes during the Mystery Interval (MI) will enhance understanding of the global climate system. The associated mechanism of seasonal variations of rainfall in the East Asian Summer Monsoon (EASM) region during the MI remains poorly known. Here we show that the δ<sup>2</sup>H values of leaf wax <em>n</em>-alkanes (δ<sup>2</sup>H<sub>alk</sub>) in a wetland core retrieved from southern China remain relatively negative during the MI. Considering the primary synthesis time of leaf waxes in deciduous woody plants and the seasonal variations of precipitation δ<sup>2</sup>H in the EASM, we interpret the low δ<sup>2</sup>H<sub>alk</sub> as the early onset of summer rainfall during the MI. The early onset of summer rainfall was likely due to the early northeastward shifting of the Western Pacific subtropical high as the result of the low land-sea thermogradient between the Qinghai-Tibet Plateau and West Pacific Ocean during late-spring to early-summer.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.