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183 results for “Eulipotyphla”
FIGURE 3. The Neighbor-Joining tree for the cytochrome b in Mitochondrial diversity of the white-toothed shrews (Mammalia, Eulipotyphla, Crocidura) in Vietnam
FIGURE 3. The Neighbor-Joining tree for the cytochrome b (cytb) gene fragment. Designations as on the Fig. 2. Suncus murinus and S. stoliczkanus are used as outgroup.
FIGURE 2 in Molecular phylogenetics and diversity of the Himalayan shrew (Soriculus nigrescens Gray, 1842) (Eulipotyphla, Soricidae) in Southwest China
FIGURE 2: Maximum Likelihood and Bayesian phylogenetic trees based on the mitochondrial Cyt-B (A) and nuclear (APOB, BRCA-1, and RAG-2) (B) sequences. Branch numbers refer to BEAST posterior probabilities (Left: PP), ML posterior probabilities (Middle: PP), and ML bootstrap support values (Right: BS). The mtDNA and nuDNA lineages have been labeled with different colors: blue for Clade A, red for Clade B, and purple for Clade YN. The abbreviations represent the sampling sites (DR: Dingri; NLM: Nielamu; YD: Yadong; MT-L: Motuo low altitude; MT-H: Motuo high altitude; BM: Bomi; BY: Bayi; ML: Milin; GBJD: Gongbujiangda; LX: Langxian).
FIGURE 1 in Molecular phylogenetics and diversity of the Himalayan shrew (Soriculus nigrescens Gray, 1842) (Eulipotyphla, Soricidae) in Southwest China
FIGURE 1: Map of Southwest China showing the sampling localities of S. nigrescens included in this study. Locality numbers are presented in Table 1, and the lineages have been labeled with different colors: blue for Clade A, red for Clade B, and purple for Clade YN. The sample of Nepal represents the collection site of the sequence downloaded from Genbank. Shaded area represents the distribution map of S. nigrescens from the Handbook Mammals of the World and Global Biodiversity Information Facility (GBIF: https://www.gbif.org/).
FIGURE 4 in Molecular phylogenetics and diversity of the Himalayan shrew (Soriculus nigrescens Gray, 1842) (Eulipotyphla, Soricidae) in Southwest China
FIGURE 4: A: Bayesian species tree results for S. nigrescens in Southwestern China assuming three species based on mtDNA + nuDNA. The mtDNA and nuDNA lineages have been labeled with different colors: blue for Clade A, red for Clade B, and purple for Clade YN; B: Divergence time estimation of the S. nigrescens derived from BEAST by using Cyt-B dataset. Numbers above the clades and in the brackets represent estimated divergence dates (Left) and the posterior probabilities (Right) of each node. The lineages have been labeled with different colors: blue for Clade A, red for Clade B, and purple for Clade YN. The abbreviations represent the sampling sites (DR: Dingri; NLM: Nielamu; YD: Yadong; MT-L: Motuo low altitude; MT-H: Motuo high altitude; BM: Bomi; BY: Bayi; ML: Milin; GBJD: Gongbujiangda; LX: Langxian).
FIGURE 3 in Molecular phylogenetics and diversity of the Himalayan shrew (Soriculus nigrescens Gray, 1842) (Eulipotyphla, Soricidae) in Southwest China
FIGURE 3: A: Plot showing JK values for different K values tested. The K with the highest JK value is most likely to represent the true number of clusters; B: The linear relationship between LnP(D) and the number of clusters. C: Bayesian clustering results at K = 3 from the structure analysis.
Figure 5 in Molecular relationships of the Israeli shrews (Eulipotyphla: Soricidae) based on cytochrome b sequences
Figure 5: Maximum likelihood tree of Suncus cytb sequences. Phylogenetic relationships inferred from a matrix of 1,140 nucleotide positions for 36 individuals. Maximum likelihood bootstrap supports above 50% and Bayesian posterior probabilities above 0.70 are indicated near the corresponding node separated with a slash. Sequences obtained in this work are indicated in bold. Authors of sequence data in Supplementary Table S6.
Figure 4 in Molecular relationships of the Israeli shrews (Eulipotyphla: Soricidae) based on cytochrome b sequences
Figure 4: Maximum likelihood tree of Crocidura suaveolens complex cytb sequences. Phylogenetic relationships inferred from a matrix of 996 nucleotide positions for 215 individuals. Maximum likelihood bootstrap supports above 50% and Bayesian posterior probabilities above 0.70 are indicated near the corresponding node separated with a slash. Sequences obtained in this work are indicated in bold. Authors of sequence data in Supplementary Table S5.
Figure 3 in Molecular relationships of the Israeli shrews (Eulipotyphla: Soricidae) based on cytochrome b sequences
Figure 3: Maximum likelihood tree of Crocidura leucodon cytb sequences. Phylogenetic relationships inferred from a matrix of 1,077 nucleotide positions for 63 individuals. Maximum likelihood bootstrap supports above 50% and Bayesian posterior probabilities above 0.70 are indicated near the corresponding node separated with a slash. Sequences obtained in this work are indicated in bold. Authors of sequence data in Supplementary Table S4.
Figure 2 in Molecular relationships of the Israeli shrews (Eulipotyphla: Soricidae) based on cytochrome b sequences
Figure 2: Maximum likelihood tree of Crocidura cytb sequences with emphasis on the Asian and Old World species. Phylogenetic relationships inferred from a matrix of 1,128 nucleotide positions for 131 individuals. Maximum likelihood bootstrap supports above 50% and Bayesian posterior probabilities above 0.70 are indicated near the corresponding node separated with a slash. Sequences obtained in this work are indicated in bold. Authors of sequence data in Supplementary Table S3.
Figure 1 in Molecular relationships of the Israeli shrews (Eulipotyphla: Soricidae) based on cytochrome b sequences
Figure 1: Shrew sample locations. A. samples sequenced in this work. B. shrew specimen present in the Steinhardt National Collection of Natural History, Zoological Museum at Tel Aviv University (Israel). The two major biomes of Israel: the Mediterranean biome, and the desert, are indicated in green and yellow, respectively. Red squares, blues stars, green circles and black triangles indicate C. ramona, S. etruscus, C. suaveolens gueldenstaedtii and C. leucodon specimen respectively. The museum records encompass 79 C. leucodon, 594 C. suaveolens gueldenstaedtii, 13 C. ramona and 443 S. etruscus.
FIGURE 4 in A new shrew mole species of the genus Uropsilus (Eulipotyphla: Talpidae) from northwestern Vietnam
FIGURE 4. Illustrations of orbital process, lacrimal foramen, and infraorbital foremen of Uropsilus fansipanensis sp. nov. (IEBR-M-8101), U. soricipes (BMNH 1911.9.8.12), U. gracilis (BMNH 1911.9.8.13), U. investigator (BMNH 1922.9.1.16), U. andersoni (BMNH 1911.2.1.30), U. aequodonenia (Liu et al. 2013), U. nivatus & U. atronates (Wan 2015), and U. dabieshanensis (Hu et al. 2021).
FIGURE 3 in A new shrew mole species of the genus Uropsilus (Eulipotyphla: Talpidae) from northwestern Vietnam
FIGURE 3. Dorsal view (A), ventral view (B), lateral view (C) of cranium, lateral view (D), dorsal view (E) of mandible, lower toothrow (right side, lingual view, F), and upper toothrow (right side, lingual view, G) of holotype (IEBR-M-8101) of Uropsilus fansipanensis sp. nov..
FIGURE 1 in A new shrew mole species of the genus Uropsilus (Eulipotyphla: Talpidae) from northwestern Vietnam
FIGURE 1. Maximum likelihood (ML) tree based on cytb, RAG1, and RAG2 concatenated sequences for shrew mole species of genus Uropsilus. Maximum likelihood bootstrap support (MLBS) and Bayesian posterior probabilities (PP) are shown at each node (MLBS/PP).
FIGURE 6 in A new shrew mole species of the genus Uropsilus (Eulipotyphla: Talpidae) from northwestern Vietnam
FIGURE 6. Distribution map of Uropsilus in China (re-illustrated from Hu et al. 2021) and Vietnam. Base map is from Google Earth.
FIGURE 5 in A new shrew mole species of the genus Uropsilus (Eulipotyphla: Talpidae) from northwestern Vietnam
FIGURE 5. Habitat (A) and map showing the type locality (B) of Uropsilus fansipanensis sp. nov. in Mt. Fansipan, Hoang Lien National Park, Lao Cai province, northwestern Vietnam.
Supplementary material 1 from: Shi Z, Yao H, He K, Bai W, Zhou J, Fan J, Su W, Nie W, Yang S, Onditi KO, Jiang X, Chen Z (2023) A new species of forest hedgehog (Mesechinus, Erinaceidae, Eulipotyphla, Mammalia) from eastern China. ZooKeys 1185: 143-161. https://doi.org/10.3897/zookeys.1185.111615
Collection information of Mesechinus orientalis sp. nov.
Supplementary material 3 from: Shi Z, Yao H, He K, Bai W, Zhou J, Fan J, Su W, Nie W, Yang S, Onditi KO, Jiang X, Chen Z (2023) A new species of forest hedgehog (Mesechinus, Erinaceidae, Eulipotyphla, Mammalia) from eastern China. ZooKeys 1185: 143-161. https://doi.org/10.3897/zookeys.1185.111615
Morphological characteristic matrix
Supplementary material 4 from: Shi Z, Yao H, He K, Bai W, Zhou J, Fan J, Su W, Nie W, Yang S, Onditi KO, Jiang X, Chen Z (2023) A new species of forest hedgehog (Mesechinus, Erinaceidae, Eulipotyphla, Mammalia) from eastern China. ZooKeys 1185: 143-161. https://doi.org/10.3897/zookeys.1185.111615
Morphological transformation series
Supplementary material 2 from: Shi Z, Yao H, He K, Bai W, Zhou J, Fan J, Su W, Nie W, Yang S, Onditi KO, Jiang X, Chen Z (2023) A new species of forest hedgehog (Mesechinus, Erinaceidae, Eulipotyphla, Mammalia) from eastern China. ZooKeys 1185: 143-161. https://doi.org/10.3897/zookeys.1185.111615
Partitioning schemes used in mitogenome RAxML analyses
Supplementary material 4 from: Ren X, Xu Y, Li Y, Yao H, Fang Y, Khanal L, Cheng L, Zeng W, Jiang X, Chen Z (2023) A new species of shrew moles, genus Uropsilus Milne-Edwards, 1871 (Mammalia, Eulipotyphla, Talpidae), from the Wuyi Mountains, Jiangxi Province, eastern China. ZooKeys 1186: 25-46. https://doi.org/10.3897/zookeys.1186.111592
Independent-sample t-test
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