Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
184
datasets available to search
ShareScore release 0.7.1
Dataset results
184 results for “FCE”
FCE Redlands 1994 Land Use, Miami-Dade County, South Florida
Urban growth models have increasingly been used by planners and policy makers to visualize, organize, understand, and predict urban growth. However, these models reveal a wide disparity in their attention to policy factors. Some urban growth models capture few if any specific policy effects (e.g.,as model variables), while others integrate certain policies but not others. Since zoning policies are the most widely used form of land use control in the United States, their conspicuous absence from so many urban growth models is surprising. This research investigated the impacts of zoning on urban growth by calibrating and simulating a cellular automaton urban growth model, SLEUTH, under two conditions in a South Florida location. The first condition integrated restrictive agricultural zoning into SLEUTH, while the other ignored zoning data. Goodness of fit metrics indicate that including the agricultural zoning data improved model performance. The results further suggest that agricultural zoning has been somewhat successful in retarding urban growth in South Florida. Ignoring zoning information is detrimental to SLEUTH performance in particular, and urban growth modeling in general.
Mangrove Litterfall from the Shark River Slough and Taylor Slough, Everglades National Park (FCE), South Florida, USA, January 2001 - ongoing
Monthly litterfall data is being collected in two mangrove-dominated regions (Shark River and Taylor Slough) in South Florida. Three sites (SRS4, SRS5, SRS6) in the Shark River region and one site (TS/Ph8) in the Joe Bay area region were used to characterize patterns of litterfall production. At each mangrove site 10 litter baskets (0.5 x 0.5 m) were placed in two 20 x 20 m plots (five baskets per plot). Data have been collected since January 2001. Statistical analysis is being performed. See also Shark River mangrove litterfall carbon and nutrients data package knb-lter-fce.1266 (https://portal.edirepository.org/nis/mapbrowse?scope=knb-lter-fce&identifier=1266).
DIC and DOC 13C tracer data from Shark River Slough and Harney River (FCE), Everglades, South Florida in November 2011
As part of the larger NSF WSC funded project, an SF6 tracer study was conducted in November of 2011 by working groups form ENP, FIU and Univ. of Hawaii. This work included the release of the tracer (SF6), which was sampled in a lagrangian approach as the tracer “patch” moved from the fresh water portion of the system to the mangrove ecotone along the Shark and Harney Rivers. The goal of this study was to measure carbon export through the system. Annie Palya used our new CRDS system to measure the isotopic composition (d13C) of the DOM & DIC (analyzed at RSMAS) during this study, as carbon isotopes may help to resolve different sources of carbon. This analytical approach is relatively new, and will be important for understanding the C-dynamics within the FCE.
Trophic transfer of Everglades marsh consumer biomass to Everglades Estuaries (FCE LTER), Everglades National Park, South Florida, USA, December 2010 to July 2013
We measured the trophic transfer of secondary consumer biomass from the Everglades marshes to the oligohaline reaches of the Shark River by sampling the diets of four common large bodied piscivorous fishes occurring at the marsh-estuary oligohaline ecotone. The four species sampled were Florida bass (Micropterus floridanus), bowfin (Amia calva), common snook (Centropomus undecimalis), and red drum (Sciaenops ocellatus). We sampled diets via pulsed gastric lavage, a relatively non-lethal and effective sampling technique used to measure trophic interactions. We quantified trophic transfer of marsh biomass to the estuary when a focal piscivore consumed a prey species that was likely a migrant from adjacent marshes. A more detailed description of these methods can be found in citation #28. In the presented data, we combined estimates of relative abundance of piscivores from standardized electrofishing techniques (# of piscivores/ 100 meters of sampled shoreline) with biomass of marsh species consumed in the estuary to calculate the biomass (g) transferred to the estuary per 100 meters of shoreline. These values serve as our index of how much biomass is being exported off of the marsh to the estuary through consumer mediated habitat linkages. An important key finding from this work is that disturbance, in particular drought, can sever this biomass linkage, and conserve biomass export off of karstic wetlands to estuaries through of marsh secondary consumer trophic pathways.
Percentage of Carbon and Nitrogen of Soil Sediments from the Shark River Slough, Taylor Slough and Florida Bay within Everglades National Park (FCE LTER), Florida, USA, August 2008 - ongoing
These data represent the results of CHN Analysis from annual soil sampling from all 17 FCE LTER transect locations from Year 2008 thru ongoing. In 2017, the samples were collected before Hurricane Irma (2017a) and post Hurricane Irma (2017b). Surface soils from 0-10 cm been homogenized and analyzed from Sawgrass and mangrove sites and Florida Bay sites. Soils and sediments were analyzed for percentage by weight of total Carbon and Nitrogen with a PerkinElmer CHNS /O 2400 Series II Elemental Analyzer. These analyses are completed to document the differences in soil composition among transect sites, and to provide a baseline dataset against which long-term changes in the properties of the soils can be detected.
Biomarker assessment of spatial and temporal changes in the composition of flocculent material (floc) in the subtropical wetland of the Florida Coastal Everglades (FCE) from May 2007 to December 2009
Flocculent material (floc) is an important energy source in wetlands. In the Florida Everglades, floc is present in both freshwater marshes and coastal environments and plays a key role in food webs and nutrient cycling. However, not much is known about its environmental dynamics, in particular its biological sources and bio-reactivity. We analysed floc samples collected from different environments in the Florida Everglades and applied biomarkers and pigment chemotaxonomy to identify spatial and seasonal differences in organic matter sources. An attempt was made to link floc composition with algal and plant productivity. Spatial differences were observed between freshwater marsh and estuarine floc. Freshwater floc receives organic matter inputs from local periphyton mats, as indicated by microbial biomarkers and chlorophyll-a estimates. At the estuarine sites, the floc is dominated by mangrove as well as diatom inputs from the marine end-member. The hydroperiod (duration and depth of inundation) at the freshwater sites influences floc organic matter preservation, where the floc at the short-hydroperiod site is more oxidised likely due to periodic dry-down conditions. Seasonal differences in floc composition were not consistent and the few that were observed are likely linked to the primary productivity of the dominant biomass (periphyton in the freshwater marshes and mangroves in the estuarine zone). Molecular evidence for hydrological transport of floc material from the freshwater marshes to the coastal fringe was also observed. With the on-going restoration of the Florida Everglades, it is important to gain a better understanding of the biogeochemical dynamics of floc, including its sources, transformations and reactivity.
Periphyton Nutritonal Data across the freshwater Everglades (FCE): June 2016-Feb 2017
Fatty Acid profiles were obtained for various periphyton sources (food for consumers) accross the freshwater Everglades in June-July 2016, the peak of the wet season, and in January 2017, the peak of the dry season. These data include specific fatty acid markers for each periphyton type (floating mat, benthic mat, epiphyton, and/or filamentous green) collected. Nutritional measurements for various periphyton sources (food for consumers) were also obtained during the same intervals. These measurements include periphyton type (floating mat, benthic mat, epiphyton, and/or filamentous green), periphyton availability (volume, organic content and mineral content), stoichiometric data (TP, C:N, C:P, and N:P), and macronutrient composition (protein, carbohydrate, lipid). These measurements form the basis for the data discussed in the dissertation chapter, "Freshwater herbivores dominate over omnivores in suboptimal habitats because of their ability to exploit low quality resources" by Jessica L Sanchez and Joel C Trexler.
Water, Soil, Floc, Plant Total Phosphorus, Total Carbon, and Bulk Density data (FCE) from Everglades Protection Area (EPA) from 2004 to 2016
These data are a compillation of data from multiple sources including South Florida Water Management District (SFWMD) DBhydro web database, United States Environment Protection Agency Regional, Environmental Monitoring and Assessment (REMAP), Everglades Soil Mapping (ESM), and Florida Coastal Everglades Long Term Ecological Research (FCE-LTER). The matrix of these data were compiled for soil, surface water, floc, and plants where the nutrients are counted for total phosphorus, total carbon, and bulk density. When downloading the data from DBhydro, only regularly collected samples (SAMP) were included these data. As per DBhydro metadata, the regular samples were collected monthly by grab method throughout the year from 2004 to 2016 for SFWMD monitoring stations across the EPA. All flagged and field quality controlled values were excluded to avoid the duplication of data. In order to maintain the quality assurance/ quality control (QA/QC) the method detection limit for water TP was fixed at 2 µg/L by the SFWMD. This data set were used to assess the decadal trend of TP concentration in surface water and soil in EPA. Available data from 2004 to 2014 was collected for soils and from 2004 to 2016 for water to understand a decade of trends. Both Geographic Information System (GIS) and statistical data analysis were applied to determine changes in water quality and soil chemistry. These data are the basis for Shishir Sarker's Master's thesis.
Dissolved Organic Carbon Stable Isotopes and Lignin Phenols from Everglades National Park (FCE LTER), South Florida, USA, January 2019 - ongoing
Estuarine and coastal waters are home to more than half of the world's population and provide many social and economic benefits to society. Additionally, these ecosystems are sites of intense carbon cycling and are under pressure from changing land uses and climate. DOM is functionally defined as the OM passed through a 0.7 µm borosilicate glass fiber filter (GF/F) and is primarily made up of viruses, bacteria, colloids, lignins, humic substances, organic acids, and other small organic compounds (Repeta, 2015). Approximately 50% of DOM is generally considered to be dissolved organic carbon (DOC) (Stedmon and Nelson, 2015). Thus, DOC can be used as a proxy for quantifying DOM. Whole water samples were collected monthly from three different transects representing marl-dominated (Taylor Slough), peat-dominated (Shark River Slough), and seagrass-dominated (Florida Bay) environments. The water was filtered using 0.7 µm porosity glass fiber filters, then acidified to pH 2 and stored at 4°C until processing occurred. DOC concentration and the stable isotope ratio of DOC (δ13C-DOC) was measured on an OI Analytical TOC analyzer coupled to an Agilent Delta V plus Isotope Ratio Mass Spectrometer using high-temperature combustion (Lalonde et al., 2014). Dissolved vanillyl (vanillin, acetovanillone, vanillin acid), syringyl (syringaldehyde, acetosyringone, syringic acid), cinnamyl (p-coumaric acid, ferulic acid), and 3,5-hydroxybenzoic acid lignin phenols were isolated from ~2 liters of 0.7 µm filtered, acidified (pH 2) water by solid phase extraction (SPE) using 1g PPL cartridges that were pre-conditioned using pH 2 water and methanol. SPE cartridges were extracted using methanol, then dried and redissolved in 2N NaOH. Cupric oxide oxidation and liquid-liquid ethyl acetate extraction were used to extract lignin oxidation products (Hedges and Ertel, 1982, modified by Goñi and Hedges, 1995; Louchouarn et al., 2000; Goñi and Montgomery, 2000; Benner and Kaiser, 2011). Briefly, NaO
Stable isotope values of consumers, producers, and organic matter in the Shark River Slough and Taylor Slough, Everglades National Park (FCE LTER), Florida, USA, 2019 – ongoing
Wetland food webs have often been characterized as detrital-based ‘brown’ energy pyramids, whereas the relative role of autotrophic (‘green’) vs. microbial (‘brown’) energy sources falls along a continuum set by physical drivers, as well as autochthonous and allochthonous inputs (Moore et al. 2004; Evans-White & Halvorson 2017) that change with ecosystem development (Schmitz et al. 2006). In the Florida Coastal Everglades (FCE), metabolic imbalances, including the collapse of calcareous periphyton mats, begin with a loss of foundation species primary production and legacy organic matter (Gaiser et al. 2006). This process likely enhances heterotrophic microbial productivity (Schulte 2016) and the supply of detrital energy to consumers by changing bioavailable and recalcitrant carbon supplies (Baggett et al. 2013). A shift from complex periphyton communities to transient planktonic communities under elevated P exposure reduces habitat structure and animal refuges but increases ‘green’ energy supplies and edibility (Trexler et al. 2015; Naja et al. 2017). Multiple sites (n=9) within the FCE were selected to document changes in coastal food webs as a result of eutrophication and increasing hydrologic variability. The project began in 2019 and is currently ongoing. References: Baggett, L. P., Heck, K. L., Frankovich, T. A., Armitage, A. R., & Fourqurean, J. W. (2013). Stoichiometry, growth, and fecundity responses to nutrient enrichment by invertebrate grazers in sub-tropical turtle grass (Thalassia testudinum) meadows. Marine biology, 160, 169-180. Evans-White, M. A., and H. M. Halvorson. 2017. Comparing the Ecological Stoichiometry in Green and Brown Food Webs – A Review and Meta-analysis of Freshwater Food Webs. Frontiers in Microbiology 8:1184. Gaiser, E. E., Childers, D. L., Jones, R. D., Richards, J. H., Scinto, L. J., & Trexler, J. C. (2006). Periphyton responses to eutrophication in the Florida Everglades: cross‐system patterns of structural and compositional cha
Water Quality Data (Rainfall-driven autosampler) from the Shark River Slough, Everglades National Park (FCE LTER), Florida, USA, June 2003 - ongoing
Water quality samples are being collected using ISCO autosamplers at all freshwater sites: SRS1a (not active), SRS1c (not active), SRS1d, SRS2, and SRS3. Rain level actuators are used at the sites to trigger water sampling after rain events exceed a given threshold of duration and/or intensity. As currently programmed, when a rain event at a site exceeds the threshold of 2.5 cm per hour, the autosampler at that site collects a 1000mL sample 30 minutes later. The samples are retrieved from the site every 3-4 weeks and analyzed for total phosphorus (TP), total nitrogen (TN), and salinity. Salinity values were not taken consistently from 2000 to mid-2017; those values were replaced by -9999 in the data. See also Shark River Slough precipitation data package (knb-lter-fce.1092) and Shark River Slough extensive water quality data (knb-lter-fce.1072) on the FCE LTER website's data catalog or in the EDI repository.
NOAA Daily Surface Meteorologic Data at NCDC Flamingo Ranger Station (ID-083020) (FCE), South Florida, USA, January 1951 - January 2021
The National Climatic Data Center's (NOAA) daily mean, maximum, and minimum air temperatures and daily precipitation collected at Flamingo Station (Coop ID- 083020). This site was terminated in January 2021.
NOAA Daily Surface Meteorologic Data at NCDC Royal Palm Ranger Station (ID-087760)(FCE LTER), South Florida, USA, May 1949 - ongoing
The National Climatic Data Center's (NOAA) daily mean, maximum, and minimum air temperatures and daily precipitation collected at Royal Palm Ranger Station (Coop ID- 087760).
Temperatures,salinities, and dissolved oxygen levels in the Shark River Slough, Everglades National Park (FCE LTER) , from May 2005 to May 2014
This dataset provides information on the environmental conditions in the Shark River Slough including dissolved oxygen, water temperature, and salinity. Data suggest that environmental parameters vary spatially and temporally within the system, especially during transition periods between the wet and dry seasons.
Biogeochemical data collected from Northeast Shark Slough, Everglades National Park (FCE LTER) from September 2006 to September 2008
Each site's physical characteristics (pH, water depth and temperature) were measured in the field and recorded. Two water samples (filtered and unfiltered) were collected from each throw, along with a floc sample (if present). All samples were taken back to the lab for analysis (e.g. water content, % organic matter, bulk density, and TP/TN/TC).
Water Quality Data (Extensive) from the Taylor Slough, just outside Everglades National Park (FCE), from August 1998 to December 2006
Water quality samples are being collected using ISCO autosamplers at all wetland sites (that is, all sites except TS/Ph-9, 10, and 11). The autosamplers contain 24 1L bottles. Water is sampled by programming the autosamplers to take composite samples once every 3 days. These samples are a composite of four 250mL subsamples drawn every 18 hours (a sampling scheme that captures a dawn, noon, dusk, and midnight sample in every three day composite). Starting in December 2006 for Sites SRS1d, SRS2, SRS3, and June 2007 for TS/Ph1a, TS/Ph2, and TS/Ph3 - the 3 day composite samples are now combined in a 2 liter bottle upon returning to the lab to form 6 day composite sample. Samples are retrieved every 3-4 weeks. Retrieval of the composite samples may result in a composite sample which is less than three or six days. The recorded date for each composite sample indicates the end date of the sample interval. Samples are analyzed for total phosphorus (TP), total nitrogen (TN), and salinity. When sites are visited to collect these samples, we also collect a grab sample that is immediately put on ice. A portion of these grab samples are filtered through a Whatman GF/F filters (0.7 um) immediately upon return to the lab, and the filtered samples are analyzed for inorganic nutrients such as NO2-, NO3-, NH4+, SRP, and DOC. The unfiltered fraction of these grab samples is analyzed for TP, TN, and TOC (TOC is no longer analyzed starting in August 2005 for all sites). We use these montly grab samples to generate relationships between TP and SRP, and between TN and NO2- + NO3- + NH4+. Dissolved nutrients are measured using standard rapid flow analyzer (RFA) techniques. TP is analyzed with a modified Solorzano and Sharp (1980) technique. TN is measured with an Antec TN analyzer, TOC and DOC are quantified on a Shimadzu TOC Analyzer, and salinity is measured with a YSI conductivity meter. In addition to the regular water quality monitoring, we use the rain level actuators at all freshwat
Water Levels from the Taylor Slough, Everglades National Park (FCE LTER), South Florida from April 1996 to 2012
Data is a compilation of 15 minute data into daily averages for use with other FCE-LTER datasets. For original dataset Meta-data and other information please visit the South Florida Information Access (SOFIA) website at https://archive.usgs.gov/archive/sites/sofia.usgs.gov/index.html (the current URL as of March 2020)
Monthly monitoring of Fluorescence, UV, Humic and non-Humic Carbon, Carbohydrates, and DOC for Shark River Slough, Taylor Slough, and Florida Bay, Everglades National Park (FCE LTER) for January 2002 to August 2004
A better understanding of the biogeochemical cycling of nutrients in the Florida Coastal Everglades is a key issue regarding the restoration of the Everglades, which is expected to change the water quality throughout South Florida. In addition to rain, the main freshwater supply to Florida Bay will be derived from Taylor Slough and the C-111 Basin in the north-east section of the Bay. While it is known that these areas deliver significant amounts of nitrogen to the Bay, a significant portion of this nitrogen is in its dissolved organic form (DON). The sources, environmental fate and bioavailability to microorganisms of this DON are however, not known. Preliminary data suggest that although proteins have been detected in canal samples, labile dissolved organic matter (DOM) components were found to increase in abundance in the freshwater marshes compared to their levels in the adjacent canal waters. Leaching experiments of biomass showed the presence of such labile DOM. However, this DOM was found to be susceptible to both biodegradation and photodecomposition. In this study we will focus on the determination of the molecular characteristics of both DOM and DON and assess the bioavailability of these materials in transects ranging from the C-111 canal and Taylor Slough to the central part of Florida Bay. Relevant water quality and spectroscopic parameters will be monitored at 11 sites on a monthly basis, while six of these sites will be sampled biannually for DOM and DON chemical characterization and bioavailability studies. Advanced analytical techniques such as pyrolysis-GC/MS, FTIR, 13C- and 15N-NMR, gel electrophoresis and LC/MS will be used in the molecular characterization effort. We envisage that this study will allow for a better assessment of the sources of DON and its bioavailability in this system.
Periphyton Productivity from the Shark River Slough and Taylor Slough, Everglades National Park (FCE LTER), South Florida, USA, October 2001 - October 2024
Periphyton productivity was measured annually at FCE LTER sites in Florida Bay and Shark Slough using light and dark BOD bottle incubations. Data are presented in terms of mass oxygen and/or carbon produced/consumed per gram of periphyton and per m2 of marsh. This is part of continuous data collection to test the hypothesis that phosphorus and nitrogen limit productivity at the upstream and downstream ends, respectively, of the FCE transects. Conclusions await longer-term data collection. Data collection is complete.
Macrophyte count data collected from Northeast Shark Slough, Everglades National Park (FCE LTER) from September 2006 to September 2008
Three 1m2 throws are made within a few meters of each site center. Within each throw, all emergent macrophytes are counted (live and dead) and recorded. Submerged periphyton-associated aquatic vegetation are identified and recorded as a percentage of the total periphyton component. Macrophyte cover is recorded in percent cover, and average plant height is determined from three representative plants. Water depth is also recorded as an average of three depths.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.