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122 results for “Incongruence”
Data from: Phylogeny of frogs of the Physalaemus pustulosus species group, with an examination of data incongruence
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Data from: Deep phylogenetic incongruence in the angiosperm clade Rosidae
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Data from: Taxon Influence Index: assessing taxon-induced incongruities in phylogenetic inference
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Data from: Incongruence between mtDNA and nuclear data in the freshwater mussel genus Cyprogenia (Bivalvia: Unionidae) and its impact on species delineation
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Incongruence between transcriptional and vascular pathophysiological cell states I
GEO Series GSE229793. Mus musculus. 10 samples. Type: Expression profiling by high throughput sequencing; Other.
Data from: Phylogenomics supports incongruence between ecological specialization and taxonomy in a charismatic clade of buck moths
Local adaptation can be a fundamental component of speciation, but its dynamics in relation to gene flow are not necessarily straightforward. Herbivorous taxa with localized host plant or habitat specialization across their geographic range are ideal models for investigating the patterns and constraints of local adaptation and its impact on diversification. The charismatic, day-flying moths of the Hemileuca maia species complex (Lepidoptera: Saturniidae) are such taxa, as they are geographically-widespread, exhibit considerable ecological and morphological variability and host and habitat specificity, but apparently lack genetic differentiation across their range. Here, we use genome-wide single nucleotide polymorphisms to assess relationships and population structure of this group across North America, and investigate the scales where genomic divergence correlates with adaptive ecological characteristics. In contrast to previous genetic studies of the group, we find broad- and fine-scale genetic differentiation between lineages, which is at odds with various levels of taxonomic description and recognition of conservation units. Furthermore, ecological specialization only explains some fine-scale genetic differentiation, and across much of the group's range, local adaptation is apparently occurring in the face of strong gene flow. These results provide unprecedented insight into drivers of speciation in this group, the relationship between taxonomy and genomics-informed species boundaries, and conservation management of internationally-protected entities. Broadly, this system provides a model for understanding how local adaptation in an herbivore can arise and be maintained in the face of apparently strong gene flow, and the importance of geographic isolation in generating genomic divergence, despite a lack of ecological divergence.
Optimizing Individual Health Care for Young People With Gender Incongruence
ClinicalTrials.gov study NCT06573177. IPD Sharing: NO. Countries: 1. Publications: 0.
Treatment of Peri-implant Mucositis on Incongruous Dental Prostheses Versus Congruous
ClinicalTrials.gov study NCT05923554. IPD Sharing: YES. Countries: 1. Publications: 0.
Data from: Congruence versus phylogenetic accuracy: revisiting the incongruence length difference test
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Data from: Phylogenomics supports incongruence between ecological specialization and taxonomy in a charismatic clade of buck moths
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Incongruence between transcriptional and vascular pathophysiological cell states II
GEO Series GSE231612. Mus musculus. 30 samples. Type: Expression profiling by high throughput sequencing.
Incongruence between transcriptional and vascular pathophysiological cell states
GEO Series GSE231613. Mus musculus. 40 samples. Type: Expression profiling by high throughput sequencing.
Fig. 18 in A Comprehensive Phylogeny of Tettigoniidae (Orthoptera: Ensifera) Reveals Extensive Ecomorph Convergence and Widespread Taxonomic Incongruence
Fig. 18. Pseudophylline group: supertribe 'Pleminiiti'. Vertical bars indicate subtribes, tribes, and subfamilies. Paraphyletic groups are marked with an asterisk. Posterior probability values over 90 are marked with a circle at the node. Photo credits are as follows: (Pterophylla camellifolia (Fabricius, 1775)) Tom Murray, (Championica sp. (Saussure & Pictet, 1898) and Balboana sp.(Uvarov, 1939)) Arthur Anker.
Fig. 8 in A Comprehensive Phylogeny of Tettigoniidae (Orthoptera: Ensifera) Reveals Extensive Ecomorph Convergence and Widespread Taxonomic Incongruence
Fig. 8. Convergence in the false-leaf katydids (Pseudophyllinae). Four distinct and distantly related lineages are currently described under Pseudophyllinae. (A) Simoderini is an Afrotropical (Malagasy) tribe that resulted from an early divergence from the remaining Phaneropteroid clade. (B) Ischnomelini is a New World tribe of false-leaf katydids that are recovered as sister to the remaining katydids in the Mecopodinae group. (C) The Australian Phricta (Redtenbacher, 1892) is nested within the Australasian mecopodine tribe Sexavaini. (D) The remaining katydids make up the Pseudophyllinae group. Posterior probabilities over 90 are marked with a circle at the node. Photo credits are as follows: (A) Orthoptera species file online, (B) Joseph Mugleston, (C) Neil Hewett, (D) Tom Murray.
Fig. 1 a Dated phylogeny and ancestral area reconstruction for 147 in Against all odds: reconstructing the evolutionary history of Scrophularia (Scrophulariaceae) despite high levels of incongruence and reticulate evolution
Fig. 1 a Dated phylogeny and ancestral area reconstruction for 147 Scrophularia species, on a majority-rule consensus tree obtained from Bayesian analysis of combined plastid trnQ-rps16 intergenic spacer and trnL-trnF region alongside coded indels. Branches indicate levels of support, based on posterior probabilities (PP) and plotted bootstrap support values (BS) from Maximum Likelihood optimization; bold PP ≥ 95 or BS ≥ 85, semi-bold PP ≥ 90 or BS ≥ 75, thin PP <90/BS <75. Seven additional nodes only supported by ML (BS ≥ 50) were added manually but not incorporated into further analyses. Gray bars on the right denote Clades 1–18 and main species groups as discussed in the text. An arrow indicates the position of the Himalayan-Tibetan endemic genus Oreosolen. Single accessions displaying hard incongruence among (2ISP-coded) nuclear and plastid trees are marked in bold; Clades 7 and 5 (excluding S. chlorantha; plus S. cryptophila) as a whole are also hardly incongruent. The occurrence of large indels as defined in Table 2 is indicated next to each accession with the respective length type number;
Figure 5 in Molecular phylogeny of Chinese raspy crickets (Orthoptera: Gryllacrididae) reveals incongruences in current classification
Figure 5. Abdominal terminal: male (A–F), female (G–I). A, Glolarnaca sp.; B, Neolarnaca sp.; C, Ha. bilobulata; D, Apt. quadrimaculata; E, Apt. biloba; F, T. huanglianensis sp. nov.. (Arrow in A indicates spines extending downwards from the base in the middle of each valve at the posterior margin of male abdominal tergite, arrow in F indicates styli.).
Figure 2. Male abdominal terminal. A in Molecular phylogeny of Chinese raspy crickets (Orthoptera: Gryllacrididae) reveals incongruences in current classification
Figure 2. Male abdominal terminal. A, Diaphanogryllacris sp.; B, Mi. dicrana; C, D, Ho. gladiate; E, F, Ho. obtusitubera; G, F. wufengensis (from: Liu et al. 2022b); H, W. lianhua; I, Metriogryllacris sp.; J, Ni. testaceus; K, Si. quadrateprocera; L, Dial. zhoui (from: Shi et al. 2016) (arrows in A and B indicate a pair of dilated and strongly upwards extending whiskers at male abdominal tergite, arrow in G indicates short spines extending at male terminal tergite, arrow in H indicates longer spines extending at male abdominal tergite).
Figure 1 in Molecular phylogeny of Chinese raspy crickets (Orthoptera: Gryllacrididae) reveals incongruences in current classification
Figure 1. ML tree based on COI, COII, Cytb, 18S, and 28S gene sequence, the nodes are bootstrap values/Bayesian posterior probabilities/ SH-aLRT, respectively, and the first column on the right is the taxonomy system by Cadena-Castañeda (2019), the second by Ingrisch (2018), white colour for new genera and species erected in this study, or species not mentioned by Ingrisch (2018).
Figure 9. Living Gryllacrididae. A in Molecular phylogeny of Chinese raspy crickets (Orthoptera: Gryllacrididae) reveals incongruences in current classification
Figure 9. Living Gryllacrididae. A, Mar. sequestris; B, Dr. spinose; C, Capnogryllacris sp.; D, Mag. hainanensis; E, Ocellarnaca sp.; F, E. ruficeps; G, R. xiei; H, Prosopogryllacris sp..
Figure 4 in Root causes of phylogenetic incongruence observed within basal sauropodomorph interrelationships
Figure 4. Pie charts illustrating different features of the characters shared by at least two of the three analyses: P, Pol et al. (2011); U, Upchurch et al. (2007a); Y, Yates et al. (2010). A, distribution of the characters common to the three analyses or shared by two matrices. B, location of the characters. C, character types. D, complexity of characters in Yates et al. (2010) and Pol et al. (2011).
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.