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292 results for “Indicator species”
Valenzuela phylogenomic dataset from: Illumina whole genome sequencing indicates ploidy level differences within the Valenzuela flavidus (Psocodea: Psocomorpha: Caeciliusidae) species complex
<p>This contains data for the manuscript: "Illumina Whole Genome Sequencing indicates Ploidy Level Differences within the <i>Valenzuela flavidus </i>(Psocodea: Psocomorpha: Caeciliusidae) Species Complex".</p> <p><i>Valenzuela flavidus</i> is a species of bark louse which is known to have asexual parthenogenetic populations in Europe but is believed to have sexual and asexual populations in North America as well. Historically, <i>Valenzuela aurantiacus</i> was the species epithet recognized for North American members until reports of asexual reproduction surfaced in certain North American populations. Cytogenetic studies have demonstrated European all-female populations are triploid. However, males are often reported in North America suggesting diploidy for sexual populations. With the use of Illumina whole genome sequencing, genetic diversity among North American and European populations was explored with phylogenomic methods. Ploidy level was estimated by examining allele frequencies of read-mapped homologous gene regions. Results indicate divergent populations between Europe and North America. North American populations containing males are estimated to be diploid suggesting a different mechanism of genomic reproduction. These results suggest divergent population structure among European asexual and North American sexual members of <i>V. flavidus</i> providing insight for future studies to understand patterns of asexuality reported within the complex.</p> <p>The following file contains all gene alignments, concatenated supermatrix, and mitochondrial alignment for this manuscript. In addition, the BAM files used to estimate allele frequencies. Also, gene trees for coalescent analysis, resultant treefiles from IQ-tree searches, and MCMCtree result.</p>
FIGURE. The Bayesian tree of the Adaintum pedatum complex based on chloroplast markers and corresponding rhizome type. Support values (Bayesian inference posterior probability (BIPP) (upper) ≥ 0.5, and maximum likelihood bootstrap support (MLBS) (nether) ≥ 50%) are shown above the main branches, the thickened branches indicate MLBS=100 and BIPP=1. Yellow bar means erect rhizome; blue bar means creeping rhizome; gray bar means decumbent or short-creeping rhizome. in Adiantum japonicum, a new species of the Adiantum pedatum complex (Pteridaceae) from Japan
FIGURE. The Bayesian tree of the Adaintum pedatum complex based on chloroplast markers and corresponding rhizome type. Support values (Bayesian inference posterior probability (BIPP) (upper) ≥ 0.5, and maximum likelihood bootstrap support (MLBS) (nether) ≥ 50%) are shown above the main branches, the thickened branches indicate MLBS=100 and BIPP=1. Yellow bar means erect rhizome; blue bar means creeping rhizome; gray bar means decumbent or short-creeping rhizome.
Subspecies and Distribution. T.n.napuF.Cuvier,1822—SMyanmar,Thai/MalayPeninsula,islandsoffWMalayPeninsula(Langkawi&Pangkor),Borneo,SSumatra,BangkaI,islandsoffBorneo(Laut&Serasan). T.n.bangue:Chasen&Kloss,1931—BanggiIandBalembanganI,offNBorneo. T.n.bunguranensisMiller,1901—NatunaIs(=Bunguran),oftWBorneo. T.n.neubronneriSody,1931—NSumatra. T.n.nmiasisLyon,1916—NiasI,offWSumatra. T.n.rufulusMiller,1900—TiomanI,offEMalayPeninsula,RiauandLinggaArchipelagos. T. n. terutus Thomas & Wroughton, 1909 — Terutau I, off W Malay Peninsula. The species was recently reconfirmed for Singapore. Maps that include Vietnam, Cambodia, and Laos in the distribution range are based on the earlier assumption that 7. versicolor was a subspecies of 1. napu. Subsequent studies have indicated that 7. versicolor is a distinct species, and that the range of 1. napu therefore does not extend into Cambodia, Laos, and Vietnam. The northern limit on the Thai-Malay peninsula is not well defined. Specimens of 1. napu have been collected from as far north as Bankachon in southern Myanmar (10° 08" N), but despite fairly intensive camera-trapping in Kui Buri National Park, Thailand (12° N), 7. napu has not been photographed there. At the northern margin ofits range, it is generally rare. It has been reported, for example, that during the flooding of the Chiew Larn Reservoir (Surat Thani Province; about 9° N, 98° 45' E), only six 7. napu were rescued compared with 172 71. kanchil. This area is the transition zone from wetter evergreen forest to drier deciduous types, and it might be that 7° napu is not well adapted to the drier forest types towards the northern limit ofits range. There are unconfirmed reports of the species on Java, where it may have been confused with one of the two color morphs of 7. javanicus. As explained in the Taxonomy section, the subspecific status of the populations of several islands remains unclear. in Tragulidae
Subspecies and Distribution. T.n.napuF.Cuvier,1822—SMyanmar,Thai/MalayPeninsula,islandsoffWMalayPeninsula(Langkawi&Pangkor),Borneo,SSumatra,BangkaI,islandsoffBorneo(Laut&Serasan). T.n.bangue:Chasen&Kloss,1931—BanggiIandBalembanganI,offNBorneo. T.n.bunguranensisMiller,1901—NatunaIs(=Bunguran),oftWBorneo. T.n.neubronneriSody,1931—NSumatra. T.n.nmiasisLyon,1916—NiasI,offWSumatra. T.n.rufulusMiller,1900—TiomanI,offEMalayPeninsula,RiauandLinggaArchipelagos. T. n. terutus Thomas & Wroughton, 1909 — Terutau I, off W Malay Peninsula. The species was recently reconfirmed for Singapore. Maps that include Vietnam, Cambodia, and Laos in the distribution range are based on the earlier assumption that 7. versicolor was a subspecies of 1. napu. Subsequent studies have indicated that 7. versicolor is a distinct species, and that the range of 1. napu therefore does not extend into Cambodia, Laos, and Vietnam. The northern limit on the Thai-Malay peninsula is not well defined. Specimens of 1. napu have been collected from as far north as Bankachon in southern Myanmar (10° 08" N), but despite fairly intensive camera-trapping in Kui Buri National Park, Thailand (12° N), 7. napu has not been photographed there. At the northern margin ofits range, it is generally rare. It has been reported, for example, that during the flooding of the Chiew Larn Reservoir (Surat Thani Province; about 9° N, 98° 45' E), only six 7. napu were rescued compared with 172 71. kanchil. This area is the transition zone from wetter evergreen forest to drier deciduous types, and it might be that 7° napu is not well adapted to the drier forest types towards the northern limit ofits range. There are unconfirmed reports of the species on Java, where it may have been confused with one of the two color morphs of 7. javanicus. As explained in the Taxonomy section, the subspecific status of the populations of several islands remains unclear.
FIGURE. Microscopic structures of Gliophorus roseus (PAN612, holotype). a. Upper part of pileipellis, gelatinous matrix not indicated. b. Basidiospores. c. Ixo-cheilocystidia in a gelatinous matrix (not indicated). d. Basidia at different developmental stages. Bars = 10 µm. Drawings by K. Reschke. in New and interesting species of Agaricomycetes from Panama
FIGURE. Microscopic structures of Gliophorus roseus (PAN612, holotype). a. Upper part of pileipellis, gelatinous matrix not indicated. b. Basidiospores. c. Ixo-cheilocystidia in a gelatinous matrix (not indicated). d. Basidia at different developmental stages. Bars = 10 µm. Drawings by K. Reschke.
FIGURE 16. Licea pygmaea and L. pusilla spore size. For each specimen indicated 30 in Species of Licea Schrad. (Myxomycetes) in Kedrovaya Pad State Nature Biosphere Reserve (Far East, Russia), including two new species
FIGURE 16. Licea pygmaea and L. pusilla spore size. For each specimen indicated 30 spores were measured.
Distribution. Confirmed from NW Africa, the Sahel, and Nile Valley, E through the Middle East and WArabia to NW& C India (E to E Madhya Pradesh, 80° E); with possible distribution spots in E & SE India (indicated byfour mostlyhistorical records). Reportedly common in Bangladesh (yet disproved by recent reports) and retained on species lists of Myanmar, Thailand, and Sumatra without being supported by anyrecent record. in Rhinopomatidae
Distribution. Confirmed from NW Africa, the Sahel, and Nile Valley, E through the Middle East and WArabia to NW& C India (E to E Madhya Pradesh, 80° E); with possible distribution spots in E & SE India (indicated byfour mostlyhistorical records). Reportedly common in Bangladesh (yet disproved by recent reports) and retained on species lists of Myanmar, Thailand, and Sumatra without being supported by anyrecent record.
FIGURE 7 in Intraspecific variations of morphometric indices of some species of the genus Ditylenchus Filipjev, 1936 (Nematoda: Anguinidae) in relation to diet and temperature
FIGURE 7. Lateral fields (A-C) and tail shape variations (D-I). A. Four lateral lines in Ditylenchus dipsaci; B. Six lateral lines in D. myceliophagus; C. Additional lines between main lines in D. destructor; D. Pointed tail terminus in male of D. destructor; E. Thick tail with rounded terminus in D. myceliophagus; F. Thin tail with pointed terminus in D. medicaginis; G & H. Finely rounded tail terminus in D. geraerti and D. destructor; I. Mucronate tail terminus in D. parvus. All scale-bars = 10 µm.
FIGURE 6 in Intraspecific variations of morphometric indices of some species of the genus Ditylenchus Filipjev, 1936 (Nematoda: Anguinidae) in relation to diet and temperature
FIGURE 6. Effect of different temperature treatments on means of morphometric indices of pure population of Ditylenchus myceliophagus. Bars with the same letter(s) are not significantly different (P <0.05), according to Duncan's Multiple Range Test.
FIGURE 5 in Intraspecific variations of morphometric indices of some species of the genus Ditylenchus Filipjev, 1936 (Nematoda: Anguinidae) in relation to diet and temperature
FIGURE 5. Effect of different temperature treatments on means of morphometric indices of pure populations of Ditylenchus dipsaci (Garlic and alfalfa populations). In each population, bars with the same letter(s) are not significantly different (P <0.05), according to Duncan's Multiple Range Test.
FIGURE 3 in Intraspecific variations of morphometric indices of some species of the genus Ditylenchus Filipjev, 1936 (Nematoda: Anguinidae) in relation to diet and temperature
FIGURE 3. Effect of different diet treatments on means of morphometric indices of pure population of Ditylenchus myceliophagus. Bars with the same letter(s) are not significantly different (P <0.05), according to Duncan's Multiple Range Test.
FIGURE 4 in Intraspecific variations of morphometric indices of some species of the genus Ditylenchus Filipjev, 1936 (Nematoda: Anguinidae) in relation to diet and temperature
FIGURE 4. Effect of different temperature treatments on means of morphometric indices of pure populations of Ditylenchus destructor (Hamadan, Kerman and Fars populations; codes 188, 347 and 348, respectively). In each population, bars with the same letter(s) are not significantly different (P <0.05), according to Duncan's Multiple Range Test.
FIGURE 2 in Intraspecific variations of morphometric indices of some species of the genus Ditylenchus Filipjev, 1936 (Nematoda: Anguinidae) in relation to diet and temperature
FIGURE 2. Effect of different diet treatments on means of morphometric indices of pure populations of Ditylenchus dipsaci (Garlic and alfalfa populations). In each population, bars with the same letter(s) are not significantly different (P <0.05), according to Duncan's Multiple Range Test.
FIGURE 1 in Intraspecific variations of morphometric indices of some species of the genus Ditylenchus Filipjev, 1936 (Nematoda: Anguinidae) in relation to diet and temperature
FIGURE 1. Effect of different diet treatments on means of morphometric indices of pure population of Ditylenchus destructor (Hamadan population, code 188). Bars with the same letter(s) are not significantly different (P <0.05), according to Duncan's Multiple Range Test.
Figure 6. Chronogram resulting from Bayesian analysis employing a in Phylogeny indicates polyphyly in Cnodocentron (Trichoptera: Xiphocentronidae): biogeography and revision of New World species (Caenocentron)
Figure 6. Chronogram resulting from Bayesian analysis employing a relaxed clock. Most likely ancestral distribution recovered in DEC analysis and estimated mean age are displayed at the nodes. Dispersal events are indicated as a black line below the distribution boxes, vicariant events are indicated in a green line, as recovered in the biogeographic analysis. Highest posterior density (HPD) 95% intervals for the ages of the nodes are indicated by light blue bars. Timescale and global surface temperature estimated from δ18O benthic (Zachos et al., 2001) are displayed on the bottom. Eocene and Miocene thermal optimum are highlighted in grey. Cnodocentron and Caenocentron species distributions are shown in the maps.
Figure 5. Maximum credibility Bayesian tree obtained from 46 in Phylogeny indicates polyphyly in Cnodocentron (Trichoptera: Xiphocentronidae): biogeography and revision of New World species (Caenocentron)
Figure 5. Maximum credibility Bayesian tree obtained from 46 morphological characters and COI coded to Cnodocentron sensu Schmid and related taxa (all compatible groups shown). Morphological character states are displayed along the branches: boxes refer to unambiguous transformations; circles to characters under ACCTRAN optimization. Black symbols indicate unique character changes. Posterior probability support values are displayed in boxes below the node branches. Male genitalia of species of each clade are displayed in lateral view. Oriental species modified from the original descriptions: Malicky & Chantaramongkol (1992), Oláh & Johanson (2010), Schmid (1982).
Figure 3 in Phylogeny indicates polyphyly in Cnodocentron (Trichoptera: Xiphocentronidae): biogeography and revision of New World species (Caenocentron)
Figure 3. Mesothorax: A, Caenocentron carlosdelarosai; B, Cnodocentron brogimarus; C, Xiphocentron maiteae; D, Melanotrichia samaconius. Hind leg apical spur: E, Drepanocentron sp.; F, Cnodocentron sp.
Figure 2 in Phylogeny indicates polyphyly in Cnodocentron (Trichoptera: Xiphocentronidae): biogeography and revision of New World species (Caenocentron)
Figure 2. Wing venation: A, Melanotrichia attia; B, Cnodocentron tchaturbhuja; C, Cnodocentron girika. Male genitalia: D, aspect of mesal sclerite of Melanotrichia sp., 200×; E, Melanotrichia attia, lateral view; F, Cnodocentron vrisaparvan, lateral view. Male genitalia, sternum IX, ventral: G, Cnodocentron filamenta; H, Cnodocentron brogimarus; I, Cnodocentron tchaturbhuja; J, Cnodocentron devayani; K, Cnodocentron vrisaparvan; L, Cnodocentron girika. Female genitalia, segment VIII apex, dorsal: M, Caenocentron carlosdelarosai; N, Cnodocentron tchaturbhuja.
Figure 13 in Phylogeny indicates polyphyly in Cnodocentron (Trichoptera: Xiphocentronidae): biogeography and revision of New World species (Caenocentron)
Figure 13. Caenocentron rafamoralesi sp. nov. A, wing venation. Male genitalia: B, lateral; C, dorsal; D, ventral.
Figure 1 in Phylogeny indicates polyphyly in Cnodocentron (Trichoptera: Xiphocentronidae): biogeography and revision of New World species (Caenocentron)
Figure 1. Xiphocentronidae world distribution showing Cnodocentron sensu Schmid species distribution in red circles. Tropical moist forests are displayed in green.
Figure 12 in Phylogeny indicates polyphyly in Cnodocentron (Trichoptera: Xiphocentronidae): biogeography and revision of New World species (Caenocentron)
Figure 12. Bayesian analysis of COI sequences of Caenocentron carlosdelarosai and Caenocentron rafamoralesi and other xiphocentronids, showing clustering associating male and females of each species. COI accession numbers are displayed in front of each specimen. Posterior probability values are displayed below each node.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.