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FIGURE 10. Neighbor-joining ITS1 in Species discovery and diversity in Lobocriconema (Criconematidae: Nematoda) and related plant-parasitic nematodes from North American ecoregions
FIGURE 10. Neighbor-joining ITS1 tree (Internal Transcribed Spacer 1). Terminal branches identified by NID numbers, taxon, location information and COI group. GenBank Accession sequences are highlighted in green, NID numbers from Criconema arkaense collection sites in Cordero et al. (2012) are highlighted in orange. Clade designation follows the COI tree structure. Red bootstrap values of 5,000 replications.
FIGURE 6. Neighbour Joining network derived from a in A new species of Trimma (Pisces; Gobiidae) from the South-West Islands of Palau, western Pacific Ocean
FIGURE 6. Neighbour Joining network derived from a BOL analysis of the CO1 gene of the Trimma preclarum haplogroups. Image by R. Winterbottom.
FIGURE 1. Neighbor-joining tree for cytochrome c oxidase subunit I in Anacroneuria flintorum Froehlich 2002 (Plecoptera: Perlidae): Notes, distribution, and life stages association using molecular tools
FIGURE 1. Neighbor-joining tree for cytochrome c oxidase subunit I (COI) sequences (433 bp) from Anacroneuria flintorum Froehlich and related stoneflies from Espírito Santo and São Paulo States, Brazil, modeled by Kimura-2-parameter (K2P).
The Ring: Worst-Case Optimal Joins in Graph Databases using (Almost) No Extra Space
<p><strong>wikidata-filtered-enumerated: </strong>Wikidata subgraph with 81,426,573 triples</p> <p><strong>wikidata-ring: </strong>Wikidata graph with 958,844,164 triples. The compressed file contains the mapping from subject/objects (.SO) and predicates (.P)</p>
Fig. 3 Median-joining haplotype network obtained for 867 in Diversification and evolutionary history of brush-tailed mice, Calomyscidae (Rodentia), in southwestern Asia
Fig. 3 Median-joining haplotype network obtained for 867 bp of mitochondrial Cyt b of the genus Calomyscus. Circle size is relative to haplotype frequency; black circles represent extinct or unsampled
FIGURE 2. Neighbour-joining tree topology using Kimura 2 in Redescription of Chimaera ogilbyi (Chimaeriformes; Chimaeridae) from the Indo-Australian region
FIGURE 2. Neighbour-joining tree topology using Kimura 2 Parameter distance based on nucleotide sequence divergence in aligned nucleotide NADH2 sequences for Chimaera ogilbyi and closely related species. Outgroup is represented by Rhinochimaera atlantica and Harriotta raleighana. Sequence labels are based on operational taxonomic units defined in paper. GenBank accession numbers follow sequence labels. Scale bar represents 2% K2P distance.
FIGURE 2. Median joining network genes showing 95 in Taxonomic status of the black fly Prosimulium italicum Rivosecchi (Diptera: Simuliidae) based on genetic evidence
FIGURE 2. Median joining network genes showing 95% probability linkages among 28 haplotypes of COI and COII genes obtained from 29 individuals of P. hirtipes and P. italicum. Mutational changes are represented by ticks across network connections. The area of each circle is proportional to the number of individuals sharing the haplotype.
FIGURE 9. Unrooted neighbor-joining tree inferred from a in A new species of nurse-frog (Aromobatidae, Allobates) from the Juami River basin, northwestern Brazilian Amazonia
FIGURE 9. Unrooted neighbor-joining tree inferred from a fragment of the mitochondrial 16S rDNA sampled from three type specimens of Allobates juami sp. nov. and other cis-Andean Allobates species. Clade labels indicate bootstrap support values (in percentage) estimated from 5,000 bootstrap replicates (only support values> 80% are shown). Locations in parentheses are provided for sequences obtained from non-topotypic voucher specimens.
FIGURE 26. Neighbour joining tree generated using K2P in A new Pardosa species from northern Iran (Araneae, Lycosidae)
FIGURE 26. Neighbour joining tree generated using K2P distances of COI for five species of the genus Pardosa belonging to two species groups [mONticOla: P. agrestis, P. mirzakhaniae, P. pontica; prOXima: P. hortensis, P. morosa and Alopecosa virgata used as outgroup].
FIGURE 25. Neighbour joining tree generated using K2P in A new Pardosa species from northern Iran (Araneae, Lycosidae)
FIGURE 25. Neighbour joining tree generated using K2P distances of 16S rRNA for nine species of the genus Pardosa belonging to six species groups [falcata: P. falcata; falcifera: P. falcifera; lapidiciNa: P. sierra; paludicOla: P. astrigera; mONticOla: P. agrestis, P. mirzakhaniae, P. plumipes, P. pontica; saltauria: P. californica and Alopecosa virgata used as outgroup].
FIGURE 11. Identification tree. Neighbor-Joining analysis involving 20 in Six new species of Afrotropical Allodia (Diptera: Mycetophilidae): DNA barcodes indicate recent diversification with a single origin
FIGURE 11. Identification tree. Neighbor-Joining analysis involving 20 CO1 sequences. Evolutionary distances were calculated using the p-distance model. Abbreviations: M = male, F = female. Sequences retrieved from BOLD (Ratasingham & Hebert 2007) are labelled with Process ID (see Appendix 1). See methods for details.
FIGURE 4. Neighbour Joining network derived from a in Two new species of blue-eyed Trimma (Pisces; Gobiidae) from New Guinea
FIGURE 4. Neighbour Joining network derived from a BOL analysis of the COI gene of the Trimma haplogroups associated with T. blematium and T. meityae. Image by R. Winterbottom.
FIGURE 48. Neighbour joining tree, conducted under Kimura 2 in Characterization of Pleurotinae, with review of Pleurota species close to P. aristella (Linnaeus) from Morocco (Lepidoptera: Gelechioidea: Oecophoridae)
FIGURE 48. Neighbour joining tree, conducted under Kimura 2-parameter model, of ten taxa of Pleurota aristella group, based on sequences of COI gene. The values by the nodes indicate node bootstrap supports as based on 500 replicates.
FIGURE 6. Trimma haplogroups associated with T. wangunui from a Neighbour Joining Network derived from a in A new species of Trimma (Pisces; Gobiidae) from the Western Pacific Ocean
FIGURE 6. Trimma haplogroups associated with T. wangunui from a Neighbour Joining Network derived from a BOLD analysis of the COI gene with 835 samples (R. Winterbottom).
Fig. 13. Neighbour-joining tree reconstructed using 22 in Lasioglossum dorchini (Hymenoptera: Apoidea: Halictidae) a new species of bee from Israel
Fig. 13. Neighbour-joining tree reconstructed using 22 barcode sequences (658bp) of the cytochrome oxidase c subunit I gene for specimens currently identified into the virens/littorale group of species. The tree is drawn to scale, with branch lengths representing p-distances (i.e. proportions of variable sites). Four barcodes sequences (shaded in grey) are used as outgroup for the phylogenetic tree: Lasioglossum morio and L. nitidulum. Each label corresponds to the study code (Table 1) or GenBank accession followed by the species name and the country of collection. The shaded colours on the tree correspond to morphological delineation except for the species identified as Lasioglossum littorale or aff. littorale which are left unshaded. Values at node correspond to bootstrap values (%).
Fig. 2 Median joining network for the seven cytochrome b in Ecomorphology of a generalist freshwater gastropod: complex relations of shell morphology, habitat, and fecundity
Fig. 2 Median joining network for the seven cytochrome b haplotypes found in 979 New Zealand Potamopyrgus antipodarum and sampling sites. Each branch represents a single nucleotide substitution and short transversal lines as well as small black circles unsampled haplotypes. Size of circles is proportional to number of individuals per haplotype
FIGURE 4. Phylogenetic relationships among the Desmarestia species. A. The neighbor-joining tree was constructed using 2,000 in Desmarestia japonica subsp. angustifolia (Desmarestiales, Phaeophyceae), a new subspecies from Korea
FIGURE 4. Phylogenetic relationships among the Desmarestia species. A. The neighbor-joining tree was constructed using 2,000 bootstrap replicates.
Figure 1. Phylograms obtained from neighbour joining separate analyses for the 28S in Reclassification of Bracon mendocinus, a gall-associated doryctine wasp, and description of a new closely related species of Allorhogas (Hymenoptera: Braconidae)
Figure 1. Phylograms obtained from neighbour joining separate analyses for the 28S and COI datasets, including all the available Allorhogas sequences, those of the other gall-associated braconids and Heterospilus as the outgroup. The two specimens investigated in this paper are indicated in bold type. The numbers above each branch indicate the observed parsimony changes.
FIGURES NJ27–NJ30. Neighbor-joining trees. Scale bar = 1%. Blue circles indicate Nearctic specimens, red circles Palearctic specimens, and mixed circles indicate a combination of the two; diamonds indicate outgroups. In parentheses are numbers of specimens per node. NJ27, Scrobipalpa acuminatella; NJ28, Sophronia gelidella; NJ29, Anthophila fabriciana; NJ30, Phiaris bipunctana. in Shared but overlooked: 30 species of Holarctic Microlepidoptera revealed by DNA barcodes and morphology
FIGURES NJ27–NJ30. Neighbor-joining trees. Scale bar = 1%. Blue circles indicate Nearctic specimens, red circles Palearctic specimens, and mixed circles indicate a combination of the two; diamonds indicate outgroups. In parentheses are numbers of specimens per node. NJ27, Scrobipalpa acuminatella; NJ28, Sophronia gelidella; NJ29, Anthophila fabriciana; NJ30, Phiaris bipunctana.
FIGURES NJ17–NJ19, NJ21. Neighbor-joining trees. Scale bar = 1%. Blue circles indicate Nearctic specimens, red circles Palearctic specimens, and mixed circles indicate a combination of the two; diamonds indicate outgroups. In parentheses are numbers of specimens per node. NJ17, Agonopterix conterminella. NJ18, Depressaria depressana; NJ19, Coleophora atriplicis; NJ21, Coleophora granulatella. in Shared but overlooked: 30 species of Holarctic Microlepidoptera revealed by DNA barcodes and morphology
FIGURES NJ17–NJ19, NJ21. Neighbor-joining trees. Scale bar = 1%. Blue circles indicate Nearctic specimens, red circles Palearctic specimens, and mixed circles indicate a combination of the two; diamonds indicate outgroups. In parentheses are numbers of specimens per node. NJ17, Agonopterix conterminella. NJ18, Depressaria depressana; NJ19, Coleophora atriplicis; NJ21, Coleophora granulatella.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.