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1,582 results for “Manuscript”
Data used in the manuscript entitled "Turbulent heat flux dynamics along the Dotson and Getz ice-shelf fronts (Amundsen Sea, Antarctica)"
<p>Data files used in the analysis in the manuscript entitled "Turbulent heat flux dynamics along the Dotson and Getz ice-shelf fronts (Amundsen Sea, Antarctica)".</p> <p>Data were collected during the RV NB Palmer NBP2202 cruise, during the 2022 TARSAN campagine in the Amundsen Sea.</p> <p>Underway data provides daily files from the underway and meteorology sensors in JGOFS format. CTD data collected from the cruise. Information about sensors and data formats is included in the data report.</p> <p>Glider data was processed through the UEA Seaglider Toolbox (https://bitbucket.org/bastienqueste/uea-seaglider-toolbox/src/toolbox/) and is provided in Matlab format.</p> <p> </p> <p>Manuscript abstract:</p> <p>In coastal polynyas, where sea–ice formation occurs, it is crucial to have accurate estimates of heat fluxes in order to predict future rates of sea–ice formation. The Amundsen Sea Polynya is the fourth largest coastal polynya around Antarctica, yet remains poorly observed because of its remoteness. Consequently, we rely on models and reanalysis that are unvalidated to study the effect of atmospheric forcing on polynya dynamics. We use summer ship-board data from the NBP22/02 cruise to understand the turbulent heat flux dynamics in the Amundsen Sea Polynya and evaluate our ability to represent these dynamics in ERA5. We show that cold and dry air outbreaks from Antarctica enhance air–sea temperature and humidity gradients, triggering episodic heat loss events. The heat loss is larger along the ice shelves, and it is also where the ERA5 turbulent heat flux exhibits the largest biases, underestimating the flux by up to 141~W~m$^{-2}$ due to its coarse resolution and misrepresentation of ice-shelf location. By reconstructing a turbulent heat flux product from ERA5 variables using a nearest neighbour approach to obtain sea surface temperature, we decrease the bias to 107 W m$^{-2}$. Using a 1D-model, we show that the mean co-located ERA5 heat loss underestimation of -28~W~m$^{-2}$ led to an overestimation of the summer evolution of sea surface temperature (heat content) by +0.76~°C (+8.2e+07~J) over 35-days. By obtaining the reconstructed flux, the reduced heat loss bias (12 W~m$^{-2}$) reduced the seasonal bias in sea surface temperature (heat content) to -0.17~°C (-3.30e+07~J) over the 35-days. This study shows that caution should be applied when retrieving ERA5 turbulent flux along the ice shelves, and that a reconstructed flux using ERA5 variables shows better accuracy.</p> <p> </p> <p> </p>
Data for manuscript "Lightwave-controlled relativistic plasma mirrors" by Marie Ouillé, Jaismeen Kaur; Zhao Cheng ,Stefan Haessler and Rodrigo Lopez-Martens
<p>Data shown in figures 2, 3 and 4 of the manuscript "Lightwave-controlled relativistic plasma mirrors" by Marie Ouillé, Jaismeen Kaur; Zhao Cheng ,Stefan Haessler and Rodrigo Lopez-Martens, availble as a preprint here: <a href="https://arxiv.org/abs/2406.06396"><span>arXiv:2406.06396</span></a>. </p>
Supplemental material for the manuscript "Extreme genome scrambling in marine planktonic Oikopleura dioica cryptic species".
<p><strong>Supplementary material for the manuscript “Extreme genome scrambling in marine planktonic <em>Oikopleura dioica</em> cryptic species”.<br></strong></p> <p><strong><em>BreakpointsData.tar.xz contains:</em></strong></p> <ul> <li>Pairwise genome alignment files for <em>Oikopleura</em>, <em>Ciona</em>, <em>Caenorhabditis</em>, insects and muntjaks in GFF format in `inst/extdata/`.</li> <li>dN / dS computation results in `inst/extdata/dNdS/`.</li> <li>Annotations of gene models and repeat elements in GFF format in `inst/extdata/Annotations/`.</li> <li>OrthoGroups in `inst/extdata/OrthoFinder/`, where N19 represents the _O. dioica_ clade,</li> <li>N3 the tunicates and N20 the _Ciona_ clade.</li> <li>`BreakpointsData_3.11.0.tar.gz`, a R package installing the above files in the R environments where we ran our computations.</li> <li>The files needed to build the `BreakpointsData` package.</li> </ul> <p><em><strong>Oidioi_pairwise_v3.tar.gz contains:</strong></em></p> <ul> <li>The pairwise alignment files between genomes, in MAF format.</li> <li>A copy of the Nextflow pipeline used to generate them.</li> </ul> <p><em><strong>oist-assembler.tar.gz contains:</strong></em></p> <ul> <li>A Singularity image and its definition file for flye version 2.8.3-b1763` Flye-flye.2.8.3-b1763.sif` and `Flye-flye.def`.</li> <li>A copy of the Nextflow pipeline used to assemble the Bar2_p4 genome in `oist-assembler-Bar2_p4`.</li> <li>A copy of the Nextflow pipeline used to assemble the other genome in `oist-assembler-other_genomes`.</li> </ul> <p><em>Please note that these files are provided for reproducibility only and probably can not be used easily for other purposes.</em></p> <p><em><strong>Oidioi_genomes.tar.gz contains:</strong></em></p> <ul> <li>For each genome, one file (`<genome>.fa`) containing the whole genome sequence and one directory (`<genome>`) containing each chromosome, scaffold or contig of the genome as a separate file.</li> <li>For each genome, one R package, its source directory, and the vignette to create it, providing the genome information as a `BSgenome` object.</li> </ul> <p><em><strong>OrthoFinderRun.tar.xz contains:</strong></em></p> <ul> <li>A full copy of the OrthoFinder2 run that we used to compute hierarchical orthogroups.</li> </ul> <p><em><strong>Supplemental_Code.tar.gz contains:</strong></em></p> <ul> <li>A copy of <https://github.com/oist/LuscombeU_OikScrambling>, where the `.git` and `doc` directories were removed to save space.</li> </ul> <p><em><strong>AugustusAnnotation.tar.gz (added July 26th 2024) contains:</strong></em></p> <ul> <li>AUGUSTUS runs to produce the annotations that were input to OrthoFinder2. We provide them for reproducibility, with no guarantee that they are suitable for other purposes. The annotations used in the manuscript are AOM-5-5f.sm.OSKA-CDS, Bar2_p4_Flye.sm, Bsty_SCLE01.1.sm.abi.cionamodel, Fbor_SDII01.1.sm.abi, KUM-M3-7f.sm.OKI-CDS, Mery_SCLF01.1.sm.abi.cionamodel, Oalb_SCLG01.1.sm.abi.cionamodel, OKI2018_I69_annotv2.sm, Olon_SCLD01.1.sm.abi, OSKA2016v1.9.sm and Ovan_SCLH01.1.sm.abi.cionamodel.</li> </ul>
MPS Data set with images of medieval charters for handwriting-style based dating of manuscripts
<pre>The MPS benchmark data set for handwritten manuscript dating ____________________________________________________________ This data set is collected for the Dutch NWO project: Medieval Paleographical Scale (MPS) by Petros Samara Project website: http://application02.target.rug.nl/monk/Projects/MPS/ Copyright (c) Huygensinstituut, Den Haag, 2016 University of Groningen, 2016. All rights reserved. Organisation of the data: Each .tar.gz file contains a number of NetPBM images. The format is chosen because of its simplicity. Also, there is no doubt about lossy compression in the processing chain. The file names are of the format 'MPS<year>_<seqnr>.ppm', for example, 'MPS1300_0056.ppm'. Note: the files are not in a separate directory, they will be extracted in place. However, due to the unique naming, there is no problem extracting them in one single current (destination) directory. The actual type of the image can be gray scale (.pgm) or color (.ppm), in '8-bit DirectClass' according to ImageMagick's 'identify' tool. The images were cropped out of larger photographs because of irrelevant elements such as a Kodak color calibrator and non-text content such as supporting surface (table) backgrounds, seals (emblems), ribbons, etc. No effort has been made to obtain a balanced set of samples over years: the given frequencies of occurrence in archives are used. There is evidently less data in years before 1375 A.D. while some periods provides us with ample data for historical reasons (e.g, 1450 A.D.). It would have been a pity if the scarce years had determined and limited the size of this data set. Selection criteria for data reduction, whether random or systematic, would have been arbitrary. In any case, these images were used in our publications, such that the performance results of future attempts on manuscript dating can be compared with earlier results. The performances that have been reached using our algorithms are in the order of an MAE (mean average error) of 10 years. If you have any questions, please contact us: Sheng He (heshengxgd@gmail.com) Petros Samara (petros.samara@huygens.knaw.nl) Jan Burgers (jan.burgers@huygens.knaw.nl) Lambert Schomaker (L.Schomaker@ai.rug.nl) Please cite our papers if you use this data set: [1] Sheng He, Petros Samara, Jan Burgers, Lambert Schomaker. Image-based historical manuscript dating using contour and stroke fragments. Pattern Recognition(PR), Vol. 59, pp. 159-171, 2016 [2] Sheng He, Petros Samara, Jan Burgers, Lambert Schomaker. Towards style-based dating of historical documents. International Conference on Frontiers in Handwriting Recognition(ICFHR), Crete, Greece, 2014 [3] Sheng He, Petros Samara, Jan Burgers, Lambert Schomaker. Multiple-Label Guided Clustering Algorithm for Historical Document Dating and Localization IEEE Trans. on Image Processing, Vol. 25(11), Nov. 2016. http://ieeexplore.ieee.org/document/7551181/</pre> <p>Data are collected thanks to Dutch NWO grant project 380-50-006</p>
Manuscripts that include some Rubáiyát of Omar Khayyám
<p>These files cover manuscripts that include some Rubáiyát of Omar Khayyám. They form part of an archive of research data relating to the spread and influence of the <em>Rubáiyát</em> of Omar Khayyám. The data have been compiled by independent researchers W H (Bill) Martin and Sandra Mason; their contact details are in the README file. The files comprise a number of searchable listings relating to the poem and its different manifestations. </p> <p>This section of the archive contains the database ROKmss2011. It lists around 100 manuscripts and manuscript copies which contain Persian <em>Rubáiyát </em>attributed to Omar Khayyám. The list contains only those we have identified in the course of our research and it is not a comprehensive audit of all existing Khayyám manuscripts. In particular a significant number of the manuscripts listed by Du Blois (see reference) are not included. Further details of sources, and of the fields and codings used in the database, are given in the accompanying README document.</p>
On the Use of Artificially Degraded Manuscripts for Quality Assessment of Readability Enhancement Methods - Dataset & Code
<p>This object contains the dataset and python code used for the paper:</p> <p>S. Brenner and R. Sablatnig. On the Use of Artificially Degraded Manuscripts for Quality Assessment of Readability Enhancement Methods. Accepted for OAGM Workshop 2019<strong>, </strong>Steyr, Austria.</p> <p>The dataset is a modified subset of the UCL Multispectral Processed Images of Parchment Damage Dataset (<a href="http://dx.doi.org/10.14324/000.ds.1469099">10.14324/000.ds.1469099</a>). The accompanying code documents how the modified version was created and how the evaluations described in the paper were performed.</p>
caseysaenger/ForamMgCa_PSM: files and scripts for revised version of manuscript "Calibration and validation of environmental controls on planktic foraminifera Mg/Ca using global core-top data".
<p>files and scripts for revised version of manuscript "Calibration and validation of environmental controls on planktic foraminifera Mg/Ca using global core-top data". Saenger, C. and M. N. Evans. Resubmitted to Paleoceanography and Paleoclimatology, May 3, 2019.</p>
Project files provided as supporting information to the manuscript "A deep learning approach to the structural analysis of proteins"
<p><strong>README file to the project files provided as supporting information to the manuscript “A deep learning approach to the structural analysis of proteins”</strong></p> <p>Dec. 30, 2018</p> <p>Authors: Marco Giulini and Raffaello Potestio</p> <p>==================================</p> <p>The dataset contains the following files:</p> <p> </p> <p>- datasets.zip: archive containing five .csv files, namely:</p> <p> - decoys_cm.csv : all the data for 10728 protein decoys, training set</p> <p> - evaluation_cm.csv : all data for 146 proteins in the evaluation set</p> <p> - random_CG.csv : 1200 Coulomb matrices. 100 CG models for each protein with 120 amino acids</p> <p> - 1e5g_centered_sphere.csv : 100 CG models in which the central atoms in 1e5g are not removed</p> <p> - 1e5g_random_sphere.csv : 10 CG models for 10 different (random) locations for the sphere that includes atoms that have to be retained. 100 CG models in total</p> <p> </p> <p>- decoys_labels.lab containing the labels associated to the 10728 decoys present in the training set</p> <p>- evaluation_labels.lab containing the labels associated to the 146 pdb files in the evaluation set</p> <p>- random_CG_labels.lab containing the labels associated to the 6 proteins with 120 amino acids</p> <p>- network_development_training: a python script that performs cross validation and full training of the model</p> <p>- saved_networks.zip FOLDER containing 10 networks: the architecture is included in .json files while weight parameters are inside .hs files</p> <p> </p> <p>- pdb_files.zip FOLDER containing the PDB files that have been employed in the project, namely:</p> <p> - pdb_files_len100 : pdb files with 100 amino acids</p> <p> - pdb_files_len101-110 : pdb files with a number of amino acids between 101 and 110</p> <p> - decoys : decoys of length 100 extracted from the above folder: name syntax == PDBNAME_decoy_STARTRES_ENDRES.pdb</p> <p> EXAMPLE 6gsp.pdb will give rise to 6gsp_decoy_0_100.pdb , 6gsp_decoy_1_101.pdb , 6gsp_decoy_2_102.pdb , 6gsp_decoy_3_103.pdb , 6gsp_decoy_4_104.pdb</p> <p> - pdb_files_len100 : 6 pdb files with 120 amino acids</p> <p> </p>
Collection of Middle High German Rubrics in Miscellany Manuscripts 12th-16th centuries
<p>This is a collection of Middle High German Rubrics from miscellany manuscripts. </p> <p>The corpus for this study comprises almost 1432 rubrics from 68 manuscripts, which correspond to over 800 different works. It was compiled manually using different sources. One important source were previous monographs that catalogued texts and rubrics in manuscripts (see bibliography). For less researched sources, library catalogues and digital manuscript facsimili were consulted. This is not an exhaustive corpus of Middle High German rubrics for <em>Reimpaargedichte</em>, but it has all the most important manuscripts and is very representative.</p> <p> </p> <p><strong>Files</strong></p> <p>rubrics.csv: Main file, list of rubrics with reference to the modern title of the literary work to which they correspond and the manuscript. Titles are in paleographic transcription (without abbreviations) and lemmatised.</p> <p>works.csv: A list of all the works refered in the rubrics.csv file with information about author and genre</p> <p>manuscripts.csv: A list of manuscripts mentioned in rubrics.csv. Contains information about date of composition and language.</p> <p> </p> <p> </p> <p><strong>Bibliography:</strong></p> <p>Dahm-Kruse, Margit. <em>Die Sammlung als Kontext. Formen der Retextualisierung und Kontextualisierung mittelhochdeutscher Versnovellen in kleinepischen Sammelhandschriften am Beispiel von Konrads von Würzburg “Herzmaere”</em>. Tübingen: Narr Francke Attempto, 2018.</p> <p>Klingner, Jacob, y Ludger Lieb. <em>Handbuch Minnereden</em>. Berlin, Boston: De Gruyter, 2013.</p> <p>Mihm, Arend. <em>Überlieferung und Verbreitung der Märendichtung im Spätmittelalter.</em> Heidelberg: Winter, 1967.</p> <p>Moelleken, Wolfgang Wilfried. <em>Die Kleindichtung des Strickers</em>. 5 vols. Göppingen: Kümmerle, 1973.</p>
Automatic TEI encoding of manuscripts catalogues with GROBID-Dictionaries
<p>Manuscript Sales Catalogues (MSC) are highly important for authenticating documents and studying the reception of authors. Their regular publication throughout Europe since the beginning of the 19th c. has consequently raised the interest around scaling up the means for automatically structuring their contents. </p> <p>Following successful first encoding tests with <em>GROBID-Dictionaries</em> on a single MSC collection, we aim in this paper to present the results of more advanced tests of the system’s capacity to handle a larger corpus with MSC of different dealers, and therefore multiple layouts. Four different types of catalogues published between the middle of the 19th c. and the beginning of the 20th c. have been tested.</p>
Supplementary material to the manuscript: Regionalised Heat Demand and Power-To-Heat Capacities in Germany - An Open Data Set for Assessing Renewable Energy Integration
<p>This is the supplementary material for the manuscript:</p> <p>"Regionalised Heat Demand and Power-To-Heat Capacities in Germany - an Open Data Set for Assessing Renewable Energy Integration"</p> <p>Article DOI: <a href="https://doi.org/10.1016/j.apenergy.2019.114161">https://doi.org/10.1016/j.apenergy.2019.114161</a></p> <p>Open access preprint: <a href="https://arxiv.org/abs/1912.03763">https://arxiv.org/abs/1912.03763</a></p> <p> </p> <p><strong>DESCRIPTION OF THE DATASET AND LICENSES:</strong></p> <p>The subdirectory "04_results" contains the regionalised heat demand an power-to-heat capacity data on administrative district level (NUTS-3) for Germany. The subdirectories "01_census_special_evaluation_data" and "02_other_input_data" contain the utilised input data. The subdirectory "03_code" contains the developed and applied source code.</p> <p>The data in this repository are provided under open source licenses. For license information and other general information on the supplementary material, refer to the LICENSE files and README files in the respective subdirectories.</p> <p>For a detailed description of the approach developed by the author, the input data used and the generated results, refer to the manuscript "Regionalised Heat Demand and Power-To-Heat Capacities in Germany - an Open Data Set for Assessing Renewable Energy Integration".</p> <p><strong>METADATA:</strong></p> <p>Sector: Residential Buildings – Space Heating and Domestic Hot Water</p> <p>Geographical scope: Germany</p> <p>Geographical resolution: Administrative districts (NUTS-3)</p> <p>Temporal scope: 2011, three scenarios for 2030</p> <p>Temporal resolution: 15min</p> <p> </p> <p><strong>UNITS:</strong></p> <p>In the final results folders (04_results/01_installed_heating_p2h_capacity; 04_results/02_daily_time_series; 04_results/03_yearly_time_series) the units of the data are indicated in the file names or the column names, e.g. by "in_MW". In case of unit indication in the file name, the unit refers to all columns in the file.</p> <p>In the intermediate results folder (04_results/00_sql_tables_exported_to_csv) all units referring to power are "kW" and all units referring to energy are "kWh".</p> <p><strong>NEWS AND CONTACT:</strong></p> <p>This dataset will be used as part of the <a href="https://wiki.openmod-initiative.org/wiki/Region4FLEX">region4FLEX model</a>. We are currently enhancing the data by temporally and spatially resolved COP time series and determining load shifting potentials. If you wish to receive news or have general questions please contact: wilko.heitkoetter@dlr.de. </p>
Data and code to accompany the manuscript "Ground subsidence and heave over permafrost: hourly time series reveal inter-annual, seasonal and shorter-term movement caused by freezing, thawing and water movement"
<p>Data and code to accompany the manuscript "Ground subsidence and heave over permafrost: hourly time series reveal inter-annual, seasonal and shorter-term movement caused by freezing, thawing and water movement" submitted to The Cryosphere.</p>
Data associated with the manuscript: Andean bear tree selectivity for scent-marking in Ecuadorian cloud forests
<p>This is the original version of data used for the manuscript, <em>Andean bear tree selectivity for scent-marking in Ecuadorian cloud forests</em>. The data are in four files following the numerical order and titles of the Results section in the manuscript, i.e. <em>1_PCA.csv</em>, <em>2_Modeling tree selection at the individual-tee level.csv</em>, <em>3_Modeling tree selection on a local spatial scale.csv</em>, <em>4_Modeling formation of marked-tree cluster sites.csv. We used these datasets for our analysis in the program R, the details are provided in the Methods section. </em><span>Our field work was performed in compliance with the Framework Agreement for access to genetic resources called "Biodiversity Study of Ecuador '' made between the Ecuadorian Ministry of Environment and the UTPL. The code for the Agreement is MAE-DNB-CM-2015-0016-M-0002. The research was funded by Bears in Mind, International Association for Bear Research and Management, the Faculty of Environmental Sciences of Czech University of Life Sciences in Prague, National Geographic Society, Nature and Culture International, GIZ Ecuador, and Trailcampro. </span></p>
Data accompanying the manuscript "Biogeochemical cycling of trace elements and nutrients in ferruginous waters – constraints from a deep oligotrophic ancient lake", published in Limnology and Oceanography (doi: 10.1002/lno.12687)
<p>CTD and geochemical data accompanying the publication: Biogeochemical cycling of trace elements and nutrients in ferruginous waters – constraints from a deep oligotrophic ancient lake in Limnology & Oceanography (doi: 10.1002/lno.12687).</p>
Data files for the manuscript "Extended kinetic theory applied to pressure-controlled shear flows of frictionless spheres between rigid, bumpy planes"
<p>This depository contains the data of all DEM simulations used in the manuscript titled "Extended kinetic theory applied to pressure-controlled shear flows of frictionless spheres between rigid, bumpy planes" submitted to Soft Matter in July 2024.</p> <p>The data in the excel file are the measurements obtained after the coarse graining procedure.</p>
Case studies related to the manuscript Tuning Trains Speed in Railway Scheduling
<p>This dataset is dedicated to the case studies related to the manuscript <strong>Tuning Trains Speed in Railway Scheduling</strong> by Étienne André, published in the proceedings of the 25th International Conference on Formal Engineering Methods (ICFEM 2024).</p> <p>See README.md for more information.</p>
Source Data for Manuscript: Identifying genomic data use with the Data Citation Explorer
<p>This page contains the source data for the manuscript describing the Data Citation Explorer, currently in review for publication. The preprint version can be found on this page.</p> <p>Files:</p> <p><strong>DCE_manual_eval_sample.xlsx:</strong></p> <p>This file was used to manually evaluate hits generated by the Data Citation Explorer. There are two separate sheets: one with publications returned by searches in PubMed and PubMed Central and another with publications returned by searches in Dimensions. Column descriptions can be found in the file itself. Each row in each evaluation sheet refers to a pair between a JAMO record and a linked publication.</p> <p><strong>DCE_citation_report.csv</strong></p> <p>Contains JAMO record IDs and PubMed IDs from the initial 2020 DCE trial run. There are 238,994 unique JAMO IDs and 30,641 unique PubMed IDs. 78,104 JAMO records are linked with publications.</p> <p>Columns:</p> <ul> <li>jamo_id - unique JAMO record ID</li> <li>sample_group - Sample strata from which manually evaluated records were pulled</li> <li>citation_count - Number of citations associated with each record</li> <li>citations - comma-delimited PubMed IDs for linked publications</li> <li>sampled - True/False, denoting which records were included in the initial evaluation sample</li> <li>notes - descriptions for why certain sampled records were excluded from manual evaluation</li> <li>unprocessed - True/False. These 7,890 records contained anomalous fields that caused them to be rejected for processing. They are represented as zero-length files in the archive.</li> </ul> <p><strong>DCE_source_files.zip:</strong></p> <p>This folder contains 3 files for each JAMO record in DCE_citation_report.tsv. For each JAMO record listed in the citation report, three files are provided:</p> <ol> <li>JAMO_ID_source.yaml - The fields extracted from the JAMO record that were relevant to the citation search, including any previously known PMIDs (manually curated).</li> <li>JAMO_ID_expand.yaml - The source record augmented with additional metadata discovered in other resources, including the citations that were discovered based on querying PubMed Central for the values in those metadata fields.</li> <li>JAMO_ID_audit.json - The audit path as a directed acyclic graph, in JSON.</li> </ol>
Supplementary files for manuscript "Effects of alpelisib treatment on murine Pten-deficient lipomas"
<p>Supplementary datasets for figures of the manuscript "Effects of alpelisib treatment on murine Pten-deficient lipomas"</p>
Nuremberg Letterbooks: A Multi-Transcriptional Dataset of Early 15th Century Manuscripts for Document Analysis
<p>This dataset contains the images and labels of the Nuremberg Letterbooks dataset.</p> <p>It consists of four books (books 2 - 5) with line-wise transcriptions. Three kinds of transcriptions are reported: basic, regularized, and diplomatic, with additional expanded abbreviations. </p> <p>Code templates for text verification and writer verification are available at:</p> <ul> <li><a href="https://github.com/M4rt1nM4yr/letterbooks_text_verification">https://github.com/M4rt1nM4yr/letterbooks_text_verification</a></li> <li><a href="https://github.com/M4rt1nM4yr/letterbooks_writer_verification">https://github.com/M4rt1nM4yr/letterbooks_writer_verification</a></li> </ul> <p>When using this dataset, please cite: <br>M. Mayr, J. Krenz, K. Neumeier, A. Bub, S. Bürcky, N. Brolich, K. Herbers, M. Habermann, P. Fleischmann, A. Maier, and V. Christlein<em>.</em> <br>Nuremberg Letterbooks: A Multi-Transcriptional Dataset of Early 15th Century Manuscripts for Document Analysis. <em>Sci Data</em> <strong>12</strong>, 811 (2025).<br><a href="https://doi.org/10.1038/s41597-025-05144-z">https://doi.org/10.1038/s41597-025-05144-z</a></p>
Gut Analysis Toolbox: Data and code associated with JCS manuscript
<p>The data and python code in jupyter notebooks are associated with the manuscript: <strong><em>Sorensen et al. Gut Analysis Toolbox: Automating quantitative analysis of enteric neurons. J Cell Sci 2024; jcs.261950. doi: <a href="https://doi.org/10.1242/jcs.261950" target="_blank" rel="noopener">https://doi.org/10.1242/jcs.261950</a></em></strong></p> <ul> <li><strong>FigS1_analysis.zip</strong>: Data files (csv) and jupyter notebooks (ipynb) pertaining to Fig. S1D,E.</li> <li><strong>Fig3_analysis.zip</strong>: Data files (csv) and jupyter notebooks (ipynb) pertaining to Fig. 3D-N. <ul> <li>The images and analysis files associated with analysis in GAT are also uploaded: CalR_CalB_GAT_analysis.zip</li> <li>The images used in this analysis are from EXP174 in this dataset: <a href="https://zenodo.org/records/7236748">https://zenodo.org/records/7236748</a></li> </ul> </li> </ul>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.