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260 results for “Phylum”
Fig. 1 in A report of 35 unreported bacterial species in Korea, belonging to the phylum Firmicutes
Fig. 1. Neighbor-joining tree based on 16S rRNA gene sequences showing the phylogenetic relationships between the strains isolated in this study and their relatives of (A) the order Bacillales and (B) the order Lactobacillales. Filled circles indicate that the corresponding nodes (groupings) were also recovered in the maximum likelihood tree. Bootstrap values (>70%) are shown above nodes. Escherichia coli ATCC 11775T (X80725) was used as an outgroup.
Fig. 2 in A report of 28 unrecorded bacterial species, phylum Bacteroidetes, in Korea
Fig. 2. Transmission electron micrographs or scanning electron micrographs of cells of the strains isolated in this study. Strains: 1. PR22204; 2. HMF4563; 3. HMF4572; 4. HMF4589; 5. HMF6044; 6. HMF6519; 7. SFD5; 8. CAU 1400; 9. LPB0152; 10. LPB0155; 11. LPB0158; 12. LPB0163; 13. IMCC25638; 14. IMCC25641; 15. IMCC25651; 16. RUG1-3; 17. 1008; 18. 3130; 19. 6024; 20. 2PKS213; 21. CAU 1108; 22. IMCC25637; 23. JMW-3; 24. POB2; 25. POB7; 26. SFD63; 27. ZO2-10; 28. GLB7.
Fig. 1 in A report of 28 unrecorded bacterial species, phylum Bacteroidetes, in Korea
Fig. 1. Neighbor-joining tree based on 16S rRNA gene sequences showing the phylogenetic relationships between the strains isolated in this study and their relatives in the phylum Bacteroidetes. Escherichia coli ATCC 11775T (X80725) was used as an outgroup. Filled circles indicate the nodes were also recovered in maximum-likelihood tree. Bootstrap values (>70%) are shown above nodes. Scale bar, 0.1 substitutions per nucleotide.
Fig. 2 in Report of 29 unrecorded bacterial species from the phylum Proteobacteria
Fig. 2. Neighbor-joining phylogenetic tree based on 16S rRNA gene sequences, showing the relationship between 10 unrecorded bacterial species and other representatives of the class Alphaproteobacteria. Bootstrap values (>70%) based on 1000 resamplings are shown at branching points. Filled circles indicate that the corresponding nodes were recovered by all treeing methods. Open circles indicate that the corresponding nodes were recovered by the neighbor-joining and maximum-likelihood methods. Escherichia coli NCTC9001T (LN831047) was used as an outgroup (not shown). Bar, 0.02 substitutions per nucleotide position.
Fig. 3 in Report of 29 unrecorded bacterial species from the phylum Proteobacteria
Fig. 3. Neighbor-joining phylogenetic tree based on 16S rRNA gene sequences, showing the relationship between 12 unrecorded bacterial species and other representatives of the class Betaproteobacteria. Bootstrap values (>70%) based on 1000 resamplings are shown at branching points. Filled circles indicate that the corresponding nodes were recovered by all treeing methods. Open circles indicate that the corresponding nodes were recovered by the neighbour-joining and maximum-likelihood methods. Escherichia coli NCTC9001T (LN831047) was used as an outgroup (not shown). Bar, 0.02 substitutions per nucleotide position.
Fig. 2 in A report of 17 unrecorded bacterial species of Korea belonging to the phylum Bacteroidetes
Fig. 2. Neighbor-joining phylogenetic tree based on 16S rRNA gene sequences showing the relationships between bacterial strains isolated in this study and their relatives in the phylum Bacteroidetes. Only bootstrap values greater than 70% are shown at branching points. Filled circles indicate that the corresponding nodes were also recovered in the trees generated with the maximum-likelihood and maximum-parsimony algorithms. Escherichia coli ATCC 11775T (GenBank accession no. X80725) was used as an outgroup. Bar, 0.02 substitutions per nucleotide position.
Fig. 1 in A report of 17 unrecorded bacterial species of Korea belonging to the phylum Bacteroidetes
Fig. 1. Electron micrographs of cells of the strains isolated in this study. Strains: 1, JH2; 2, GH1-5; 3, HMF7877; 4, 17J42-12; 5, BT2401; 6, JH4; 7, r2a108d329; 8, IMCC34136; 9, BMW36; 10, IMCC34176; 11, HMF9511; 12, BMW32; 13, IMCC34232; 14, IMCC34139; 15, LPB0187; 16, IMCC34137; 17, Amx_S_17.
Fig. 4 in Report of 29 unrecorded bacterial species from the phylum Proteobacteria
Fig. 4. Neighbor-joining phylogenetic tree based on 16S rRNA gene sequences, showing the relationship between 7 unrecorded bacterial species and other representatives of the class Gammaproteobacteria. Bootstrap values (>70%) based on 1000 resamplings are shown at branching points. Filled circles indicate that the corresponding nodes were recovered by all treeing methods. Open circles indicate that the corresponding nodes were recovered by the neighbor-joining and maximum-likelihood methods. Flavobacterium aquatile LMG 4008T (AM230485) was used as an outgroup (not shown). Bar, 0.05 substitutions per nucleotide position.
Fig. 4 in A report of 29 unrecorded bacterial species belonging to the phylum Bacteroidetes in Korea
Fig. 4. Neighbor-joining phylogenetic tree based on 16S rRNA gene sequences, showing the phylogenetic relationships between the strains isolated in this study and their relatives of the order Sphingobacteriales in the phylum Bacteroidetes. Escherichia coli ATCC 11775T (X80725) was used as an outgroup (not shown). Bootstrap values (>70%) are shown above nodes. Scale bar: 0.01 changes per nucleotide.
Fig. 1 in A report of 29 unrecorded bacterial species belonging to the phylum Bacteroidetes in Korea
Fig. 1. Transmission electron micrographs or scanning electron micrographs of cells of the strains isolated in this study. The cells were cultured at their optimal growth conditions. Strains: 1, HN30-2; 2, RDH3; 3, G4; 4, HMF3809; 5, YBF1; 6, JD36; 7, MW24; 8, LPB0108; 9, M2015-5; 10, KYW1172; 11, C2-40; 12, NR 2-02; 13, DF-2; 14, M2015-1; 15, RDH2; 16, HMF4059; 17, 2015-2; 18, HN41; 19, HN1; 20, HN49; 21, KYW1047; 22, MW105; 23, HMF2508; 24, NU3; 25, HMF3898; 26, LPB0111; 27, HMF3876; 28, LPB0115; 29, HMF3932.
Figure 1 in Evolutionary analyses of phylum Chaetognatha based on mitochondrial cytochrome oxidase I gene
Figure 1. The Bayesian tree based on the analysis of COI gene sequences. The confidence values are presented on the nodes.
Figure 2 in Evolutionary analyses of phylum Chaetognatha based on mitochondrial cytochrome oxidase I gene
Figure 2. The maximum likelihood tree based on the analysis of COI gene sequences. The confidence values are presented on the nodes.
Linked collectors and determiners for: Colección del Phylum Cnidaria del Museo de Zoología de la Universidad de Concepción UCCC_MZUC_CNI.
Natural history specimen data linked to collectors and determiners held within, "Colección del Phylum Cnidaria del Museo de Zoología de la Universidad de Concepción UCCC_MZUC_CNI". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/1a1fea7c-a319-45b8-8354-c929fd9287e6">https://bionomia.net/dataset/1a1fea7c-a319-45b8-8354-c929fd9287e6</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/1a1fea7c-a319-45b8-8354-c929fd9287e6">https://gbif.org/dataset/1a1fea7c-a319-45b8-8354-c929fd9287e6</a>. Formatted as a Frictionless Data package.
Figure 3 in Swedish nemerteans (phylum Nemertea), with description of a new hoplonemertean genus and species
Figure 3. Tetraneuronemertes lovgreni gen. et sp. n. External features of a complete specimen. Scale bar: 1 mm.
Figure 5 in Swedish nemerteans (phylum Nemertea), with description of a new hoplonemertean genus and species
Figure 5. Tetraneuronemertes lovgreni gen. et sp. n. Schematic camera lucida drawing of transverse section through the cerebral region to show the general arrangement of the various structures in this part of the body. DG, dorsal cerebral ganglionic lobe; EP, epidermis; LM, body wall longitudinal muscle layer; PR, proboscis; ST, stomach; VG, ventral cerebral ganglionic lobe; VP, vascular plug. Scale bar: 100 Mm.
Figure 4 in Swedish nemerteans (phylum Nemertea), with description of a new hoplonemertean genus and species
Figure 4. Tetraneuronemertes lovgreni gen. et sp. n. Schematic camera lucida drawing of transverse section through the stomach region to show the general arrangement of the various structures in this part of the body. CM, body wall circular muscle layer; DE, dermis; EP, epidermis; IC, intestinal caecum; LM, body wall longitudinal muscle layer; LN, main longitudinal nerve cord; PR, proboscis; ST, stomach; UN, upper (dorsolateral) longitudinal nerve. Scale bar: 100 Mm.
Figure 2 in Swedish nemerteans (phylum Nemertea), with description of a new hoplonemertean genus and species
Figure 2. Phylogeny of selected hoplonemertean taxa to show the position of the new species described here (in bold). Majority rule consensus tree from a Bayesian analysis based on 18S rDNA sequences. Numbers above branches refer to a posteriori probabilities. Outgroup species (Heteronemertea): Cerebratulus lacteus, Lineus bilineatus, Micrura fasciolata, Zygeupolia rubens.
Novel metagenome assembled genomes (MAGs) that best represent novel species level taxa within the phylum Chloroflexota
<p>1280 Chloroflexita MAGs from the study "Taxonomic re-classification and expansion of the phylum Chloroflexota based on over 5000 genomes and metagenome-assembled genomes". Only MAGs that improved the representation of a species-level genome cluster within the phylum <em>Chloroflexota</em> were included in this deposition.</p> <p>Most of these MAGs were assembled from publicly availabe metagenome sequence data obtained from the NCBI sra database.</p> <p>An overview of the here deposited MAGs can be found in <a href="https://zenodo.org/api/files/2a6a7fa1-489c-426d-8e05-ada23038dfdf/Zenodo_deposited_MAGS_overview.xlsx?versionId=9cde1488-8388-4fdb-a45e-2d48dc066f9a"> Zenodo_deposited_MAGS_overview.xlsx</a>, for more details please refer to the abive mentioned publication.</p> <p>MAG assemblies are deposited as gzip compressed tar.archive. Three tar.gz archives have been deposited, containing the same MAG assemblies but sorted by different criteria:</p> <ol> <li>All MAGs sorted by category of the source environment</li> <li>All MAGs sorted by class designation</li> <li>All MAGs sorted by MIMAG quality (high or moderate)</li> </ol>
FIG. 2 in Structural and functional genes, and highly repetitive sequences commonly used in the phylogeny and species concept of the phylum Cyanobacteria
FIG. 2. — Phylogeny of common or less studied genetic markers. According to the literature review,less common studied genetic marker has been highlighted.
FIG. 1. — A in Structural and functional genes, and highly repetitive sequences commonly used in the phylogeny and species concept of the phylum Cyanobacteria
FIG. 1. — A summary of structural and functional genes, and highly repetitive sequences commonly used in the phylogeny of cyanobacteria.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.