Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
134
datasets available to search
ShareScore release 0.7.1
Dataset results
134 results for “SIM”
mgdc0003-sim-leaf-1
<p>Single leaves (simulated data)</p>
mgdc0004-sim-leaf-2
<p>Multiple leaves (simulated data)</p>
DeepBacs – S. aureus SIM prediction dataset and CARE model
<p>Training and test images of live, membrane-labeled <em>S. aureus </em>cells for prediction of SIM super-resolution images from widefield images, as well as a trained CARE model.</p> <p>Additional information can be found on this <a href="https://github.com/HenriquesLab/DeepBacs/wiki">github wiki</a>.</p> <p>The example image shows a widefield fluorescence image and SIM reconstruction of Nile Red labelled, live <em>S. aureus </em>cells.</p> <p> </p> <p><strong>Training and test dataset</strong></p> <p><strong>Data type</strong>: Paired microscopy images (fluorescence) of low (widefield) and high resolution (SIM)</p> <p><strong>Microscopy data type</strong>: Fluorescence microscopy (Nile Red)</p> <p><strong>Microscope</strong>: GE HealthCare Deltavision OMX system (with temperature and humidity control, 37°C) equipped with an Olympus 60x 1.42NA Oil immersion objective and 2 PCO Edge 5.5 sCMOS cameras (one for DIC, one for fluorescence)</p> <p><strong>Cell type</strong>: <em>S. aureus</em> strain JE2 grown under agarose pads</p> <p><strong>File format</strong>: .tif (16-bit for widefield images and 32-bit for SIM reconstructions)</p> <p><strong>Image size</strong>: 1024 x 1024 px² (40 nm/px)<br> <strong>Image preprocessing</strong>: <em>S. aureus</em> widefield images were scaled with a factor of 2 to match the SIM reconstruction pixel size. </p> <p> </p> <p><strong>CARE model</strong></p> <p>The CARE 2D model was generated using the ZeroCostDL4Mic platform (Chamier et al., 2021). It was trained from scratch for 300 epochs on 9400 paired image patches (image dimensions: (1024 x 1024 px²), patch size: (80 x 80 px²), 100 patches/image) with a batch size of 8 and a laplace loss function, using the CARE 2D ZeroCostDL4Mic notebook (v 1.12). Key python packages used include tensorflow (v 0.1.12), Keras (v2.3.1), csbdeep (v 0.6.1), numpy (v 1.19.5), cuda (v 10.1.243). The training was accelerated using a Tesla P100GPU and data was augmented by a factor of 4 using rotation, flipping and random zoom.</p> <p>Model weights can be used with the ZeroCostDL4Mic CARE 2D notebook or the CSBDeep Fiji plugin.</p> <p> </p> <p><strong>Author(s)</strong>: Pedro Matos Pereira<sup>1,2</sup>, Mariana Pinho<sup>1,3</sup></p> <p><strong>Contact email</strong>: <a href="mailto:pmatos@itqb.unl.pt">pmatos@itqb.unl.pt</a> and <a href="mailto:mgpinho@itqb.unl.pt">mgpinho@itqb.unl.pt</a></p> <p> </p> <p><strong>Affiliation</strong>: </p> <p>1) Bacterial Cell Biology, Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, Oeiras, Portugal</p> <p>2) ORCID: https://orcid.org/0000-0002-1426-9540</p> <p>3) ORCID: https://orcid.org/0000-0002-7132-8842</p>
Adaptive Empirical Modeling Data for "Thin Current Sheet Formation and Reconnection at $X\sim$-10\,R$_E$ during the Main Phase of a Magnetic Storm"
<p>The ZIP file contains results of AM03 model run for the magnetic storm event on 17 June 2012. </p>
Emilia coccinea (Sims) G.Don (BR0000025021462)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Photograph captions A from: Spence J, Kavanaugh D, Maddison DR, Boyd O, Brandmayr P, Garner B, Maveety S, Mosquera D, Moore W, Riley K, Shorthouse J, Sims L, Steiner W, Swing K, Turin H, Zamorano LS, Penev L (2021) Memories of Terry Erwin. In: Spence J, Casale A, Assmann T, Liebherr JК, Penev L (Eds) Systematic Zoology and Biodiversity Science: A tribute to Terry Erwin (1940-2020). ZooKeys 1044: 1001-1036. https://doi.org/10.3897/zookeys.1044.68648
Photograph captions A Photograph captions. A Floating back to the Estación de Biodiversidad Tiputini, Orellana, Ecuador on the Rio Tiputini after a morning of collecting in the blackwater swamp upstream of the station, 30 June 2017 B Terry Erwin aspirating small carabids (Meotachys and Oxydrepanus) from leaf litter, Sendero Chichico, 21 June 2017. Photographs: O. Boyd.
Photograph caption from: Spence J, Kavanaugh D, Maddison DR, Boyd O, Brandmayr P, Garner B, Maveety S, Mosquera D, Moore W, Riley K, Shorthouse J, Sims L, Steiner W, Swing K, Turin H, Zamorano LS, Penev L (2021) Memories of Terry Erwin. In: Spence J, Casale A, Assmann T, Liebherr JК, Penev L (Eds) Systematic Zoology and Biodiversity Science: A tribute to Terry Erwin (1940-2020). ZooKeys 1044: 1001-1036. https://doi.org/10.3897/zookeys.1044.68648
Photograph caption Photograph caption. Galls induced by the cynipid Diplolepis polita found at the George Lake Field Station and associated species a Maturing galls on the leaves of Rosa acicularisb Larva of D. polita in dissected gall c Larvae of the inquiline Periclistus pirata that had structurally modified a gall after killing the inducer dEurytoma longavena, one of five species of parasitoids that attack gall inhabitants, ovipositing in a gall of D. polita. e) Larva of E. longavena after it had consumed larvae of gall inhabitants and gall tissues.
Anaphalis triplinervis (Sims) C.B.Clarke (BR0000011655640)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Fig. 3 in Linderanoids A-O, dimeric sesquiterpenoids from the roots of Lindera aggregata (Sims) Kosterm
Fig. 3. Experimental and calculated ECD spectra of compounds 1, 6, 9, and 10.
Fig. 2. Selected key 1H–1H in Linderanoids A-O, dimeric sesquiterpenoids from the roots of Lindera aggregata (Sims) Kosterm
Fig. 2. Selected key 1H–1H COSY, HMBC, and NOESY correlations of compounds 1, 6, 8, and 10.
Fig. 1 in Linderanoids A-O, dimeric sesquiterpenoids from the roots of Lindera aggregata (Sims) Kosterm
Fig. 1. Structures of compounds 1–16.
cp_sim_files
<p>cp_sim_files</p>
Single-molecule microscopy (SiM-KARTS) and chemical probing (SHAPE) of lncRNA
Open the record for dataset details and reuse information.
Gene expression profile of Arabidopsis thaliana wild type and siz1-2 mutant during in vitro shoot regeneration on callus inducing media (CIM) and shoot inducing media (SIM)
GEO Series GSE141188. Arabidopsis thaliana. 24 samples. Type: Expression profiling by high throughput sequencing.
modENCODE_White Lab: genome-wide ChIP data of sim from E0-8 on Illumina Genome Analyzer.
GEO Series GSE34713. Drosophila melanogaster. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Modified Sims Versus Lumbar Roll Manipulation in Patients With Sacroiliac Joint Dysfunction
ClinicalTrials.gov study NCT07258537. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Evaluation of the School-based SIM Program in Upper Secondary School Students
ClinicalTrials.gov study NCT07111676. IPD Sharing: UNDECIDED. Countries: 0. Publications: 0.
Sim (Scratch in Miscarriage) Study
ClinicalTrials.gov study NCT02681627. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Metabolic Syndrome and Sims Score
ClinicalTrials.gov study NCT04680702. IPD Sharing: Not stated. Countries: 1. Publications: 0.
SORCE Combined XPS, SOLSTICE, and SIM Solar Spectral Irradiance 24-Hour Means V001 (SOR3D_COMBINED_001) at GES DISC
The SORCE Combined XPS, SOLSTICE, and SIM Solar Spectral Irradiance 24-Hour Means product consists of daily averages of the solar spetra from 0.1 to 2412 nm. The SORCE instruments make measurements during each daytime orbit portion, 15 orbits per day. This product combines data from the XPS, SOLSTICE and SIM instruments and merges them into a daily averaged solar spectra. The spectral resolution of SIM varies between 1-34 nm, SOLSTICE is 1 nm, and XPS is 7 nm.The SORCE combined data are arranged in a single file in a tabular ASCII text file which can be easily read into a spreadsheet application. The columns contain the date (calendar and Julian Day), min wavelength, max wavelength, instrument mode, input data version, spectral irradiance, irradiance uncertainty, and a data quality flag. Each row represents a separate day and wavelength.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.