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ShareScore release 0.7.1
Dataset results
113 results for “VCF”
Agilent v7 NA12878 VCF files
<p>Agilent v7 VCF files generated for the NGS-CN benchmarking with the development nextflow exomme pipeline version of the CCG.</p>
JSV1 VCF
<p>JSV1, a structural variation panel utilizing long-read sequencing technology of 333 individuals composing 111 trios.</p>
VCF of structural variant calls of Nanopore data aligned to dm6 reference genome
<p>Heterozygous chromosome inversions suppress meiotic crossover (CO) formation within an inversion, potentially because they lead to gross chromosome rearrangements that produce inviable gametes. Interestingly, COs are also severely reduced in regions nearby but outside of inversion breakpoints even though COs in these regions do not result in rearrangements. Our mechanistic understanding of why COs are suppressed outside of inversion breakpoints is limited by a lack of data on the frequency of noncrossover gene conversions (NCOGCs) in these regions. To address this critical gap, we mapped the location and frequency of rare CO and NCOGC events that occurred outside of the <em>dl</em>-<em>49</em> <em>chrX</em> inversion in <em>D</em>. <em>melanogaster</em>. We created full-sibling wildtype and inversion stocks and recovered COs and NCOGCs in the syntenic regions of both stocks, allowing us to directly compare rates and distributions of recombination events. We show that COs are completely suppressed within 500 kb of inversion breakpoints, are severely reduced within 2 Mb of an inversion breakpoint, and increase above wildtype levels 2–4 Mb from the breakpoint. We find that NCOGCs occur evenly throughout the chromosome and, importantly, occur at wild-type levels near inversion breakpoints. We propose a model in which COs are suppressed by inversion breakpoints in a distance-dependent manner through mechanisms that influence DNA double-strand break repair outcome but not double-strand break location or frequency. We suggest that subtle changes in the synaptonemal complex and chromosome pairing might lead to unstable interhomolog interactions during recombination that permits NCOGC formation but not CO formation.</p>
Evaluation of the Technical Success of IVUS Guided VCF Placement Using the LUMIFI™ With Crux® VCF System
ClinicalTrials.gov study NCT02394912. IPD Sharing: Not stated. Countries: 1. Publications: 0.
SNP matrices and vcf files for phylogenetic, genetic structure and historical demographic analyses of Podocarpus from Hispaniola
Open the record for dataset details and reuse information.
VCF of structural variant calls of Nanopore data aligned to dm6 reference genome
Open the record for dataset details and reuse information.
MEaSUREs Vegetation Continuous Fields (VCF) Yearly Global 0.05 Deg V001
The NASA Making Earth System Data Records for Use in Research Environments ([MEaSUREs](https://earthdata.nasa.gov/community/community-data-system-programs/measures-projects)) Vegetation Continuous Fields (VCF) Version 1 data product (VCF5KYR) provides global fractional vegetation cover at 0.05 degree (5,600 meter) spatial resolution at yearly intervals from 1982 to 2016. The VCF5KYR data product is derived from a bagged linear model algorithm using Long Term Data Record Version 4 (LTDR V4) data compiled from Advanced Very High Resolution Radiometer (AVHRR) observations. Fractional vegetation cover (FVC) is the ratio of the area of the vertical projection of green vegetation above ground to the total area, capturing the horizontal distribution and density of vegetation on the Earth's surface. FVC is a primary means for measuring global forest cover change and is a key parameter for a variety of environmental and climate-related applications, including carbon land surface models and biomass measurements. The three bands included in each VCF5KYR Version 1 GeoTIFF are: percent of tree cover, non-tree vegetation, and bare ground. A water mask was applied with all pure water pixels (defined as ≥ 95% water coverage) set to zero.Data from years 1994 and 2000 were excluded due to lack of data in the LTDR V4.Known Issues* Known issues, including constraints and limitations, are provided on page 10 of the Algorithm Theoretical Basis Document (ATBD).
SARS CoV 2 Evolution, Processed Illumina VCF Files
<p>Processed (vcf) files for Communications Biology manuscript "SARS-CoV-2 evolution in the absence of selective immune pressures, results in antibody resistance, interferon suppression and phenotypic differences by lineage". VCFs have already had variants overlapping with primers removed and represent the output when aligning merged fastq files, which are in a linked Zenodo repository.</p>
VCF Format DNA Data of an entity known as "eiritana"
<p>VCF data for the entity known as "eiritana"</p> <p>use with notification / attribution </p> <p>contact for archive pw</p>
Synthetic VCF
<p>The dataset is a compressed synthetic VCF file that includes synthetic data for 100 samples and 9640953 variants.</p>
QOCA®-Image Medical Platform - Smart VCF Risk Management System
ClinicalTrials.gov study NCT04384211. IPD Sharing: UNDECIDED. Countries: 1. Publications: 0.
fisher_for_vcf results for publication
<p>See <a href="https://github.com/gael-millot/fisher_for_vcf">https://github.com/gael-millot/fisher_fi</a></p>
VCF Files (Annotated and Non-Annotated)
<p>VCF files, plus annotations using SNPEff.</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.