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Figure 1. Bayesian maximum clade credibility tree obtained for 32 in Revision of the higher taxonomy of Neotropical freshwater crabs of the family Pseudothelphusidae, based on multigene and morphological analyses
Figure 1. Bayesian maximum clade credibility tree obtained for 32 genera of the superfamily Pseudothelphusoidea. Values at nodes represent bootstrap values for the Maximum Likelihood analysis (above branches) and posterior probabilities (below branches).
FIGURE. The Bayesian tree of the Adaintum pedatum complex based on chloroplast markers and corresponding rhizome type. Support values (Bayesian inference posterior probability (BIPP) (upper) ≥ 0.5, and maximum likelihood bootstrap support (MLBS) (nether) ≥ 50%) are shown above the main branches, the thickened branches indicate MLBS=100 and BIPP=1. Yellow bar means erect rhizome; blue bar means creeping rhizome; gray bar means decumbent or short-creeping rhizome. in Adiantum japonicum, a new species of the Adiantum pedatum complex (Pteridaceae) from Japan
FIGURE. The Bayesian tree of the Adaintum pedatum complex based on chloroplast markers and corresponding rhizome type. Support values (Bayesian inference posterior probability (BIPP) (upper) ≥ 0.5, and maximum likelihood bootstrap support (MLBS) (nether) ≥ 50%) are shown above the main branches, the thickened branches indicate MLBS=100 and BIPP=1. Yellow bar means erect rhizome; blue bar means creeping rhizome; gray bar means decumbent or short-creeping rhizome.
FIGURE. Euphorbia neobosseri in cultivation in the National Tree Museum Gimborn, The Netherlands. A. succulent rootstock and stem base; B, D. details of inflorescences; C. branch habit. Credits: W.L.A. Hetterscheid (A–D). in Novelties in Malagasy Euphorbia (Euphorbiaceae)
FIGURE. Euphorbia neobosseri in cultivation in the National Tree Museum Gimborn, The Netherlands. A. succulent rootstock and stem base; B, D. details of inflorescences; C. branch habit. Credits: W.L.A. Hetterscheid (A–D).
FIGURE. Euphorbia tsihombensis, plants in cultivation at the National Tree Museum Gimborn, The Netherlands. A. detail of the young spination with accessory spines at the base; B. branch in cultivation showing brachyblast leaves; C. branch with young spines and flat leaves with reddish and widely undulating margin. Credits. W.L.A.Hetterscheid (A–C). in Taxonomic changes and new species in Malagasy Euphorbia (Euphorbiaceae)
FIGURE. Euphorbia tsihombensis, plants in cultivation at the National Tree Museum Gimborn, The Netherlands. A. detail of the young spination with accessory spines at the base; B. branch in cultivation showing brachyblast leaves; C. branch with young spines and flat leaves with reddish and widely undulating margin. Credits. W.L.A.Hetterscheid (A–C).
FIGURE 1. Strict consensus tree obtained from 12 in Revised classification of the New World Cylapini (Heteroptera: Miridae: Cylapinae): taxonomic review of the genera Cylapinus, Cylapoides and Peltidocylapus and a morphology-based phylogenetic analysis of tribe Cylapini
FIGURE 1. Strict consensus tree obtained from 12 most parsimonious trees under equal weights. Bremer support values are indicated below branches.
FIGURE. Phylogenetic tree based on RAxML analyses of a combined LSU, ITS and SSU dataset. Bootstrap support values for ML and MP equal to or greater than 75% and PP value greater than 0.95 are in thickened. Ex-type isolates are in bold, and new taxa are indicated in red. The tree is rooted with Atractospora aquatica (S-1297) and A. aquatica (MFLU 18–2322). in Conlarium sichuanense sp. nov., on Ficus virens from Sichuan Province, China
FIGURE. Phylogenetic tree based on RAxML analyses of a combined LSU, ITS and SSU dataset. Bootstrap support values for ML and MP equal to or greater than 75% and PP value greater than 0.95 are in thickened. Ex-type isolates are in bold, and new taxa are indicated in red. The tree is rooted with Atractospora aquatica (S-1297) and A. aquatica (MFLU 18–2322).
FIGURE. Phylogenetic tree of specimens on Poaceae and related host plants constructed by MP method based on ITS+28S regions of rDNA. Bootstrap values of MP and ML are followed by the Bayesian posterior probabilities (Bpp) on the nodes in the topology. Asterisk (*) represents bootstrap values or Bpp less than 50% in the topology. Sample data are shown with voucher specimen number or GenBank accession number, and host plant. Sequence data determined in this study are shown in color. Teliospore shapes are shown in each clade detected, and new species are shown by asterisk (*) on clades. 0, I: Spermogonial and aecial host genus. Asterisk (*) on host plants: Spermogonial and aecial host plants. in Phylogenetic approach for identification and life cycles of Puccinia (Pucciniaceae) species on Poaceae from northeastern China
FIGURE. Phylogenetic tree of specimens on Poaceae and related host plants constructed by MP method based on ITS+28S regions of rDNA. Bootstrap values of MP and ML are followed by the Bayesian posterior probabilities (Bpp) on the nodes in the topology. Asterisk (*) represents bootstrap values or Bpp less than 50% in the topology. Sample data are shown with voucher specimen number or GenBank accession number, and host plant. Sequence data determined in this study are shown in color. Teliospore shapes are shown in each clade detected, and new species are shown by asterisk (*) on clades. 0, I: Spermogonial and aecial host genus. Asterisk (*) on host plants: Spermogonial and aecial host plants.
FIGURE. Phylogenetic relationships among species on Poaceae shown with synoptic phylogenetic tree constructed by MP method based on ITS+28S regions of rDNA. Same color branches show phylogenetic groups. 0, I: Spermogonial and aecial host genus. in Phylogenetic approach for identification and life cycles of Puccinia (Pucciniaceae) species on Poaceae from northeastern China
FIGURE. Phylogenetic relationships among species on Poaceae shown with synoptic phylogenetic tree constructed by MP method based on ITS+28S regions of rDNA. Same color branches show phylogenetic groups. 0, I: Spermogonial and aecial host genus.
Figure 2. Coalescent species trees with 13 in DNA barcoding and coalescent-based delimitation of endosymbiotic clevelandellid ciliates (Ciliophora: Clevelandellida): a shift to molecular taxonomy in the inventory of ciliate diversity in panesthiine cockroaches
Figure 2. Coalescent species trees with 13 (A) and 14 (B) assumed species based on 18S rRNA gene, ITS1-5.8S-ITS2 region and 28S rRNA gene sequences. Posterior probabilities of clades are provided along internal branches and posterior probabilities for the presence of individual species are provided behind the terminal branches. Scale bars denote the fraction of substitutions per site.
FIGURE. Phylogenetic tree derived from Bayesian analysis, based on nrLSU data. Posterior probability (PP> 0.95) values from the Bayesian analysis are added at the nodes. The scale bar represents the number of nucleotide changes per site. (T) indicates the type specimen for this species. The new species are in bold. in Four new species of Entoloma (Entolomataceae, Agaricomycetes) subgenera Cyanula and Claudopus from Vietnam and their phylogenetic position
FIGURE. Phylogenetic tree derived from Bayesian analysis, based on nrLSU data. Posterior probability (PP> 0.95) values from the Bayesian analysis are added at the nodes. The scale bar represents the number of nucleotide changes per site. (T) indicates the type specimen for this species. The new species are in bold.
Graph-based Leaf–Wood Separation Method for Individual Trees Using Terrestrial Lidar Point Clouds: Labeled validation data
<p>Set of 10 manually labeled point clouds used in the performance assessment of "Graph-based Leaf–Wood Separation Method for Individual Trees Using Terrestrial Lidar Point Clouds". This dataset is a collection of single trees scanned from different regions covering tropical, temperate, and boreal species—with heights ranging from 5.4 to 43.7 m, using the Riegl VZ-400 and Leica ScanStation C10 terrestrial laser scanner. These data have been preprocessed. For the original data, see https://doi.org/10.5061/dryad.10hq7;<br> https://doi.org/10.5061/dryad.np5hqbzp6;<br> https://doi.org/10.1594/PANGAEA.942856.</p>
FIGURE. Multilocus phylogenetic tree inferred from Bayesian analysis based on the combined TEF1-α and ACT sequences. Bayesian posterior probabilities are indicated next to the nodes. The tree was rooted with Cladosporium herbarum CBS 121621. The species in this study are indicated in bold. Types of species are indicated after the culture collection number (T = ex-type, ex-epitype, ex-neotype, or reference strain). in Six new species of Cladosporium associated with decayed leaves of native bamboo (Bambusoideae) in a fragment of Brazilian Atlantic Forest
FIGURE. Multilocus phylogenetic tree inferred from Bayesian analysis based on the combined TEF1-α and ACT sequences. Bayesian posterior probabilities are indicated next to the nodes. The tree was rooted with Cladosporium herbarum CBS 121621. The species in this study are indicated in bold. Types of species are indicated after the culture collection number (T = ex-type, ex-epitype, ex-neotype, or reference strain).
FIGURE. (Continued) Multilocus phylogenetic tree inferred from Bayesian analysis based on the combined TEF1-α and ACT sequences. Bayesian posterior probabilities are indicated next to the nodes. The tree was rooted with Cladosporium herbarum CBS 121621. The species in this study are indicated in bold. Types of species are indicated after the culture collection number (T = ex-type, ex-epitype, exneotype, or reference strain). in Six new species of Cladosporium associated with decayed leaves of native bamboo (Bambusoideae) in a fragment of Brazilian Atlantic Forest
FIGURE. (Continued) Multilocus phylogenetic tree inferred from Bayesian analysis based on the combined TEF1-α and ACT sequences. Bayesian posterior probabilities are indicated next to the nodes. The tree was rooted with Cladosporium herbarum CBS 121621. The species in this study are indicated in bold. Types of species are indicated after the culture collection number (T = ex-type, ex-epitype, exneotype, or reference strain).
FIGURE 7. Comparison concatenated tree ITS2 – 28S rDNA D2 in Description of two new species closely related to Doryctobracon areolatus (Szépligeti, 1911) (Hymenoptera, Braconidae), based on morphometric and molecular analyses
FIGURE 7. Comparison concatenated tree ITS2 – 28S rDNA D2 (UPGMA) produced from the nucleotide sequences (A), cluster analysis of the Mahalanobis distance (UPGMA) calculated from the shape of the wings components (B). (DAAP = Doryctobracon areolatus from Amapá, DAGO = D. areolatus from Goiás, DATO = D. areolatus from Tocantins, DASP = D. areolatus from São Paulo, YSAP = Doryctobracon whartoni sp. nov. (yellow stigma) from Amapá; BSAP = Doryctobracon adaimei sp. nov. (brown stigma) from Amapá, BSGO = D. adaimei sp. nov. from Goiás, BSTO = D. adaimei sp. nov. from Tocantins.
FIGURE 1. Maximum likelihood tree based the mitochondrial 16S in Molecular systematics of the subgenus Gephyromantis (Phylacomantis) with description of a new subspecies
FIGURE 1. Maximum likelihood tree based the mitochondrial 16S rRNA gene (540 nucleotides, 127 samples) of the subgenus Phylacomantis. The tree was rooted with sequences of Gephyromantis ambohitra (subgenus Asperomantis; not shown). Numbers at nodes are bootstrap proportions in percentage (only shown for values>50%, and not shown for shallow intraspecific nodes).
FIGURE 2. Maximum Likelihood tree based upon a in A New Megophrys Kuhl and Van Hasselt (Amphibia: Megophryidae) from southwestern Sumatra, Indonesia
FIGURE 2. Maximum Likelihood tree based upon a ~427 bp fragment of 16S rRNA gene for Megophrys lancip sp. nov., along with all representatives Sundaland and Philippine Megophrys species. Values at branches indicate Maximum Likelihood Bootstrap Proportion (MLBP), Bayesian Posterior Probabilities (BPP), and Neighbour Joining Bootstrap Proportion (NJBP).
FIGURE 3. Phylogenetic tree for the four species under study. A in No more machismo in Callyntra (Coleoptera: Tenebrionidae): Callyntra femina, a new species discovered based on female genitalia and genetic evidence
FIGURE 3. Phylogenetic tree for the four species under study. A) Tree obtained using Bayesian Inference with mitochondrial COI and 16S genes combined. Number above the nodes correspond to the posterior probabilities. B) Clade G from the COI + 16S combined tree obtained by Zúñiga-Reinoso & Méndez (2018), highlighting the species under study with colorful branches. The colors are matching the species in both trees.
FIGURE 14. Consensus tree obtained from a 847 in The identity of some specimens previously (mis)identified as Rhinoleucophenga obesa (Loew) (Diptera: Drosophilidae) in Brazil, based on morphological and molecular data, with implications on distribution
FIGURE 14. Consensus tree obtained from a 847-bp alignment of cytochrome c oxidase subunit I (COI) gene sequences of Rhinoleucophenga specimens. Above the branches, support values by Neighbour-joining (10,000 bootstrap replications) and posterior probabilities values using Bayesian inference (1,000,000 generations), respectively.
text-fig. 53. Strict consensus tree resulting from the analysis of the pruned data matrix with 51 taxa. Numbers at the nodes indicate bootstrap support values in branches that have more than 50 per cent support. The consensus tree is based on 5544 trees of 652 steps (CI 0-42, RI 0-748, RCI 0-314). in The interrelationships and evolution of basal theropod dinosaurs
text-fig. 53. Strict consensus tree resulting from the analysis of the pruned data matrix with 51 taxa. Numbers at the nodes indicate bootstrap support values in branches that have more than 50 per cent support. The consensus tree is based on 5544 trees of 652 steps (CI 0-42, RI 0-748, RCI 0-314).
text-fig. 1. Early cladistic hypotheses of the phylogeny of theropod dinosaurs, a, phylogenetic hypothesis of Thulbom (1984). B, the influential hypothesis published by Gauthier (1986). c, composite tree based on Weishampel et al. (1990). in The interrelationships and evolution of basal theropod dinosaurs
text-fig. 1. Early cladistic hypotheses of the phylogeny of theropod dinosaurs, a, phylogenetic hypothesis of Thulbom (1984). B, the influential hypothesis published by Gauthier (1986). c, composite tree based on Weishampel et al. (1990).
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.