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Fig. 3 in Report on 24 unrecorded bacterial species of Korea belonging to the phylum Firmicutes

Fig. 3. Neighborjoining phylogenetic tree based on 16S rRNA gene sequences, showing the relationship between the strains isolated in this study and their relatives of the family Enterococcaceae, Lactobacillaceae, Planococcaceae, Staphylococcaceae, and Streptococcaceae. Bootstrap values (>50%) are shown at nodes. Filled circles indicate the nodes recovered by three other treeing methods including maximum likelihood, maximum parsimony, and neighbor joining. Bar, 0.02 substitutions per nucleotide position.

Fig. 2 in A report of 39 unrecorded bacterial species in Korea, belonging to the Betaproteobacteria and Gammaproteobacteria

Fig. 2. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationship between the strains isolated in this study and their relatives of the class Betaproteobacteria. Bootstrap values (>70%) are shown above nodes for the neighbor-joining and below nodes for the maximum-likelihood methods. Filled circles indicate the nodes recovered by the two treeing methods. Bar, 0.02 substitutions per nucleotide position.

Fig. 3 in A report of 29 unrecorded bacterial species in Korea, belonging to the Alphaproteobacteria

Fig. 3. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationship between the strains isolated in this study and their relatives of the order Sphingomonadales in the class Alphaproteobacteria. Bootstrap values (>70%) are shown above nodes for the neighborjoining and below nodes for the maximumlikelihood methods. Filled circles indicate the nodes recovered by the two treeing methods. Bar, 0.01 substitutions per nucleotide position.

Fig. 1 in A report of 29 unrecorded bacterial species in Korea, belonging to the Alphaproteobacteria

Fig. 1. Transmission electron micrographs or scanning electron micrographs of cells of the strains isolated in this study. Strains: 1. CT6-3; 2. CR5-1; 3. WR-M3W; 4. RS3-4_B; 5. CR1-2; 6. MU5-14; 7. CR4-2; 8. IK41; 9. IK20; 10. Gsoil 106; 11. IK38; 12. UKS-12; 13. UKS- 27; 14. mGW21; 15. CR6-9; 16. NUG4-1; 17. CR2-3; 18. HME8658; 19. HME8673; 20. MMH1-3; 21. KYW772; 22. HME8471; 23. WRM10; 24. WR-R2Y; 25. IK06; 26. MA11; 27. ES05-2S-4-MA; 28. HD48; 29. HME8528.

Fig. 2 in A report of 29 unrecorded bacterial species in Korea, belonging to the Alphaproteobacteria

Fig. 2. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationship between the strains isolated in this study and their relatives of the order Rhizobiales in the class Alphaproteobacteria. Bootstrap values (>70%) are shown above nodes for the neighborjoining and below nodes for the maximumlikelihood methods. Filled circles indicate the nodes recovered by the two treeing methods. Bar, 0.02 substitutions per nucleotide position.

Fig. 4 in A report of 29 unrecorded bacterial species in Korea, belonging to the Alphaproteobacteria

Fig. 4. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationship between the strains isolated in this study and their relatives of the order Caulobacterales, Rhodobacterales and Rhodospirillales in the class Alphaproteobacteria. Bootstrap values (>70%) are shown above nodes for the neighborjoining and below nodes for the maximumlikelihood methods. Filled circles indicate the nodes recovered by the two treeing methods. Bar, 0.02 substitutions per nucleotide position.

Fig. 4 in A report on 33 unrecorded bacterial species of Korea isolated in 2014, belonging to the class Gammaproteobacteria

Fig. 4. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the phylogenetic relationship between the strains isolated in this study and their relatives of the order Pseudomonadales in the class Gammaproteobacteria. Sphingopyxis macrogoltabida IFO 15033T (D13723) was used as an outgroup. Bootstrap values (>70%) are shown above nodes for the neighbor-joining. Scale bar: 0.02 changes per nucleotide.

Fig. 3 in A report on 33 unrecorded bacterial species of Korea isolated in 2014, belonging to the class Gammaproteobacteria

Fig. 3. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the phylogenetic relationship between the strains isolated in this study and their relatives of the order Enterobacteriales, Oceanospirillales and Xanthomonadales in the class Gammaproteobacteria. Sphingopyxis macrogoltabida IFO 15033T (D13723) was used as an outgroup. Bootstrap values (>70%) are shown above nodes for the neighbor-joining. Scale bar: 0.02 changes per nucleotide.

Fig. 2 in A report on 33 unrecorded bacterial species of Korea isolated in 2014, belonging to the class Gammaproteobacteria

Fig. 2. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the phylogenetic relationship between the strains isolated in this study and their relatives of the order Aeromonadales, Alteromonadales and Chromatiales in the class Gammaproteobacteria. Sphingopyxis macrogoltabida IFO 15033T (D13723) was used as an outgroup. Bootstrap values (>70%) are shown above nodes for the neighbor-joining. Scale bar: 0.02 changes per nucleotide.

Fig. 1 in A report on 33 unrecorded bacterial species of Korea isolated in 2014, belonging to the class Gammaproteobacteria

Fig. 1. Transmission electron micrographs or scanning electron micrographs of cells of the strains isolated in this study. Strains: 1, MD2F 12; 2, HMF2613; 3, HME9674; 4, IMCC12363; 5, HME9272; 6, IMCC12427; 7, 61DPR3; 8, HMF2735; 9, MIH20; 10, Duck L2; 11, WR25; 12, 142-3; 13, HME8565; 14, HMF2475; 15, HMF2842; 16, IMCC12288; 17, IMCC12372; 18, IMCC12398; 19, ET2115; 20, ET131; 21, BM06; 22, 145-5; 23, HMF2483; 24, HMF2783; 25, R1-18; 26, KM2-7; 27, SRYB1; 28, B2-2; 29, B11-1; 30, B11-2; 31, WS26; 32, RK 6Y-4-1; 33, N1-1.

Fig. 1 in Report of 20 unrecorded bacterial species in Korea belonging to the phylum Firmicutes during surveys in 2020

Fig. 1. Transmission electron micrographs and scanning electron micrographs of cells of the species belonging to Firmicutes isolated in this study. Strains: 1. KYW2075; 2. MMS20-LR456; 3. MMS20-HD16; 4. MMS20-AI2-23T; 5. JHSTF-M24; 6. KYW2175; 7. CAU 1626; 8. BDTF-R2; 9. HMF5486; 10. HMG1274; 11. JHSTF-R20; 12. JHPTF-R3; 13. HMF5593; 14. MMS20-LR3019; 15. CAU 1627; 16. I2-44; 17. CAU 1608; 18. BM-39; 19. B5; 20. BM-27.

Fig. 3 in A report of 23 unrecorded bacterial species belonging to the class Alphaproteobacteria

Fig. 3. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationships between the strains isolated in this study and their relatives of the order Rhizobiales, Caulobacterales and Rhodobacterales in the class Alphaproteobacteria. Bootstrap values are greater than 70% are shown in the neighbor-joining tree method. Filled circles indicate the nodes recovered by the maximum-likelihood & maximum-parsimony treeing methods. Bar, 0.02 substitutions per nucleotide position.

Fig. 2 in A report of 23 unrecorded bacterial species belonging to the class Alphaproteobacteria

Fig. 2. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationships between the strains isolated in this study and their relatives of the order Rhodobacterales in the class Alphaproteobacteria. Bootstrap values (>70%) are shown in the neighbor-joining method. Filled circles indicate the nodes recovered by the maximum-likelihood & maximum-parsimony treeing algorithms. Bar, 0.02 substitutions per nucleotide position.

Fig. 1 in A report of 23 unrecorded bacterial species belonging to the class Alphaproteobacteria

Fig. 1. Transmission and scanning electron micrographs of cells of the strains isolated in this study. Strains: 1, Mameliella phaeodactyli FIL 61 (TEM); 2, Yangia pacifica T4-2 (TEM); 3, Paracoccus aminovorans YH6C (TEM); 4, Brevundimonas bullata YHD2 (TEM); 5, Brevundimonas variabilis HMF4573 (TEM); 6, Brevundimonas staleyi HMF4667 (TEM); 7, Maricaulis maris HMF6043 (TEM); 8, Labrenzia alba SFD13 (SEM); 9, Ruegeria atlantica SF30 (SEM); 10, Loktanella rosea ZOD2-5 (SEM); 11, Phaeobacter inhibens EC2 (SEM); 12, Dinoroseobacter shibae GLB36 (SEM); 13, Labrenzia aggregata EC2D15 (SEM); 14, Tropicimonas sediminicola CAU 1140 (TEM); 15, Lutimaribacter saemankumensis CAU 1340 (TEM); 16, Litoreibacter albidus LPB0157 (SEM); 17, Sulfitobacter mediterraneus LPB0162 (TEM); 18, Thalassospira profundimaris IMCC25636 (TEM); 19, Hyphomonas jannaschiana IMCC25644 (TEM); 20, Roseivivax pacificus IMCC25645 (TEM); 21, Thalassospira tepidiphila IMCC25646 (TEM); 22, Paracoccus seriniphilus JHR-13 (TEM); 23, Paracoccus yeei CSC-1 (TEM).

Fig. 3 in Report of 20 unrecorded bacterial species in Korea belonging to the phylum Firmicutes during surveys in 2020

Fig. 3. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationship between the strains isolated in this study and their relatives of the order Lactobacillales. Bootstrap values are shown at branch points based on 1000 replicated datasets; only values above 70% are shown. Enterococcus faecalis ATCC 19433T (AB012212) was used as an outgroup. Bar, 0.02 substitutions per nucleotide position.

Fig. 2 in Report of 20 unrecorded bacterial species in Korea belonging to the phylum Firmicutes during surveys in 2020

Fig. 2. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationship between the strains isolated in this study and their relatives of the order Bacillales. Bootstrap values are shown at branch points based on 1000 replicated datasets; only values above 70% are shown. Thermoactinomyces vulgaris KCTC 9076T (AF138739) was used as an outgroup. Bar, 0.01 substitutions per nucleotide position.

Fig. 3 in A report of 39 unrecorded bacterial species in Korea belonging to the classes Betaproteobacteria and Gammaproteobacteria isolated in 2018

Fig. 3. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationship between the strains isolated in this study and their relatives of the class Betaproteobacteria. Numbers at the nodes are levels of bootstrap value (%) based on 1000 replicat- ed datasets; only values above 70% are shown. Escherichia coli ATCC 11775T (X80725) was used as an outgroup. Bar, 0.02 substitutions per nucleotide position.

Fig. 5 in A report of 39 unrecorded bacterial species in Korea belonging to the classes Betaproteobacteria and Gammaproteobacteria isolated in 2018

Fig. 5. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationship between the strains isolated in this study and their relatives of the orders Lysobacterales and Oceanospirillales in the class Gammaproteobacteria. Numbers at the nodes are levels of bootstrap value (%) based on 1000 replicated datasets; only values above 70% are shown. Bacillus subtilis subsp. subtilis NCIB 3610T (ABQL01000001) was used as an outgroup. Bar, 0.02 substitutions per nucleotide position.

Fig. 1 in A report of 39 unrecorded bacterial species in Korea belonging to the classes Betaproteobacteria and Gammaproteobacteria isolated in 2018

Fig. 1. Transmission electron micrographs of cells of the species belonging to the Betaproteobacteria isolated in this study. Strains: 1. MMS18-G 109; 2. MS25; 3. LPB0241; 4. HMF7542; 5. MMS18-M_91; 6. HMF7541; 7. HMF7531; 8. BO221; 9. dNF-3; 10. GA051; 11. HMF7122; 12. CAU 1510; 13. 17G39-22; 14. 18H6F1.

Fig. 2 in A report of 39 unrecorded bacterial species in Korea belonging to the classes Betaproteobacteria and Gammaproteobacteria isolated in 2018

Fig. 2. Transmission electron micrographs or scanning electron micrographs of cells of the species belonging to the Gammaproteobacteria isolated in this study. Strains: 1. 18N2A1; 2. 18H4A15; 3. HMF9091; 4. KYW1522; 5. CAU 1507; 6. SC100; 7. dN13-1; 8. 18N3A9; 9. 18S2E14; 10. BO208; 11. BO171; 12. HMF9224; 13. H-2; 14. 18S2F3; 15. BT5; 16. KYW1450; 17. HMF9105; 18. SC76; 19. LPB0223; 20. BT57; 21. Hyper-1; 22. BO274; 23. LPB0247; 24. 18H1S12; 25. LPB0246.