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743 results for “clone”
Lipid data for clone C43.pMS148.pABW3
<p>Lipid sequence for clone C43.pMS148.pABW3 which produces archaeatidylglycerol. pRSF indicates a clone with an empty plasmid (which results in the control strain). 0.1 MPa or 50 MPa refers to the pressure during shock. 37C or 47C refers to the temperature (in celsius) during shock.</p>
Pathogenic potential and the role of clones and plasmids in beta-lactamase-producing E. coli from chicken faeces in Vietnam
<p>Raw data used to present figures and tables in the manuscript.</p>
Fig. 2 in Molecular cloning of the trypsin inhibitor from the skin secretion of the Madagascan Tomato Frog, Dyscophus guineti (Microhylidae), and insights into its potential defensive role
Fig. 2 Reverse phase HPLC chromatogram of the skin secretion from Dyscophus guineti (a). For the fraction in (a) marked with an arrow, a clear inhibition of trypsin activity was observed (b)
Replication package for the paper: "Code Clone Configuration as a Multi-Objective Search Problem"
<p><strong>Replication Package Context</strong></p> <p>This is the replication package for the paper "Code Clone Configuration as a Multi-Objective Search Problem". The paper was originally published in the <em>International Symposium on Empirical Software Engineering and Measurement</em> (ESEM).</p> <div> <div><strong>Search Algorithms and Datasets for MC3 Problem</strong></div> <div>This repository contains implementations of search algorithms for solving the MC3 (Multi-objective Code Clone Configuration) problem. </div> <div>Additionally, it includes various files related to Elasticsearch configurations, I/O operations, and other supporting resources. For more information about the project files and folders, you can read the README.md for general information.</div> </div>
Sanger sequencing of target and off-target genomic regions for gene-edited iPSC clones with SETBP1 genetic variants
<p>This data set includes chromatograms generated using sanger sequencing of targeted regions of genomic DNA from clonal iPSC lines. The iPSC lines include clones generated using CRISPR/Cas9 homology directed repair to introduce genetic variants into <em>SETBP1,</em> and their wild-type controls. Additional files have been included in the data set to link chromatogram (ab1) files to specific iPSC clones for genomic regions across the variant in <em>SETBP1 (</em>SETBP1 clones genetic variant sanger sequencing.xslx)<em> </em>and top<em> </em>off-target sites (SETBP1 clones off-target sanger sequencing.xlsx). </p>
FIGURE 3 in Molecular characterization of hybrids in Carex (Cyperaceae) by cloning: Carex paniculata × remota (= C. × boenninghausiana)
FIGURE 3. Majority-rule consensus tree inferred under Bayesian inference using, concatenated matK-rps16 cpDNA regions. Numbers above and below the branches indicate clade support values: Bayesian posterior probability (if>0.90) and maximum parsimony bootstrap (if>70%), respectively. Asterisks represent nonsignificant support for clades in a given analysis.
FIGURE 1 in Molecular characterization of hybrids in Carex (Cyperaceae) by cloning: Carex paniculata × remota (= C. × boenninghausiana)
FIGURE 1. Studied specimens of the parent species Carex paniculata (Cyperaceae; UPOS-5055 (A)) and C. remota (UPOS-5057 (B)), and two out of the three individuals of C. × boenninghausiana included in this study (UPOS-5056 (C) and UPOS-5059 (D)). Scale bars (black lines) indicate 5 cm length.
Data from: Can clone size serve as a proxy for clone age? An exploration using microsatellite divergence in Populus tremuloides
In long-lived clonal plant species, the overall size of a clone has previously been used to estimate clone age. The size of a clone, however, might be largely determined by physical or biotic interactions, obscuring the relationship between clone size and age. Here, we use the accumulation of mutations at 14 microsatellite loci to estimate clone age in trembling aspen, Populus tremuloides, from southwestern Canada. We show that the observed patterns of genetic divergence are consistent with a model of clonal growth, allowing us to use pairwise genetic divergence as an estimator of clone age. In the populations studied, clone size did not exhibit a significant relationship with microsatellite divergence, indicating that clone size is not a good proxy for clone age.
Figure 3 in Molecular cloning and sequence analysis of the gene encoding interleukin-6 of the giant panda (Ailuropoda melanoleuca)
Figure 3. Phylogenetic relationships of IL-6 sequences from seven species in Carnivora. (A) Neighbour-joining tree of IL-6 nucleotide sequences based on Kimura's 2-parameter distances. (B) Maximum-parsimony tree of IL-6 mature protein sequences.
Figure 1 in Molecular cloning and sequence analysis of the gene encoding interleukin-6 of the giant panda (Ailuropoda melanoleuca)
Figure 1. RT-PCR of giant panda IL-6. The expected, 700bp fragment of giant panda IL-6 cDNA was amplified.
Data accompanying "Coherent optical communications using coherence-cloned Kerr soliton microcombs"
<p>This dataset contains measurement data and digital signal processing (DSP) code for the results presented in "Coherent optical communications using coherence-cloned Kerr soliton microcombs". </p> <p> The program code included in this dataset is distributed under a GPLv3 license.</p>
Long-read genome sequencing accelerated the cloning of Pm69 by resolving the complexity of a rapidly evolving resistance gene cluster in wheat
<p>Oxford Nanopore assembly of <em>Triticum turgidum</em> ssp. <em>dicoccoides, </em>cv. G305-3M.</p>
Deep Learning Code Fragments for Code Clone Detection
<p>Paper: Deep Learning Code Fragments for Code Clone Detection</p> <p>Authors: White, M., Tufano, M., Vendome, C. and Poshyvanyk, D.</p> <p>Conference: 2016 31st IEEE/ACM International Conference on Automated Software Engineering (ASE)</p>
Chloroplast haplotypes and main haplotypes of nrITS clones of Gentiana crassicaulis
<p>The Himalaya-Hengduan Mountain region is one of the hotspots of biodiversity research. The uplift of the Qinghai-Tibetan Plateau (QTP) and the Quaternary glaciation caused great environmental changes in this region, and the responses of many species in the QTP to the Quaternary climate are still largely unknown. The genetic structure and phylogeographical history of Gentiana crassicaulis Duthie ex Burk, an endemic Chinese alpine species in this area, were investigated based on four chloroplast fragments and internal transcribed spacer region of the nuclear ribosomal DNA (nrITS) sequences of 11 populations. The populations with highly diverse chloroplast haplotypes were mainly found at the edge of the QTP. There were two main haplotypes of nrITS clones, one shared by the Yunnan and Guizhou populations, and the other by the remaining populations. The population with the highest diversity was the Gansu population, located at the edge of the plateau. Based on molecular dating, the diversification of G. crassicaulis at the edge of the plateau occurred before the Last Glacial Maximum (LGM), and the species may have completed its expansion from the edge to the platform. Ecological Niche Models were conducted to predict the distributional ranges of G. crassicaulis at present, during the LGM, and during the last interglacial (LIG) period. The results demonstrated that G. crassicaulis survived on the QTP platform and at the edge during the LGM but afterward retreated from the platform to the southern edge, followed by expansion to the platform.</p>
Benchmark datasets for "Detecting T-cell expansion and quantifying clone survival from deep profiling of immune repertoires"
<p>T-cell receptor repertoire sequencing datasets describing time courses obtained for vaccination, normal aging and blood transplant cases. Datasets reported here were previously published (except for Tem/Tcm data), this is just a compendium of selected samples that is properly pre-processed and formatted.</p>
Custom R scripts and input files for manuscript "Evolutionary histories of breast cancer and related clones"
<p>Supporting files for manuscript <em>"Evolutionary histories of breast cancer and related clones"</em>.</p> <p>Contents:</p> <ul> <li>Custom R script and an input file (*.txt) to evaluate clonal structure of single-cell derived organoids using the Gaussian mixture models</li> <li>Custom R script and an input file (*.txt) to estimate mutation rate in normal organoids using the linear regression models </li> <li>Custom R script and input files (*.txt) to generate mutation matrices for phylogenetic analysis using MEGA and treemut </li> <li>Custom R scripts and an input file (*.txt) to estimate the timing of 1q gain, 1q gain doubling, and MRCA emergence</li> </ul>
Fig. 4 in Molecular cloning, characterization and expression analysis of LoTPS2 and LoTPS4 involved in floral scent formation in oriental hybrid Lilium variety 'Siberia'
Fig. 4. Product analysis of LoTPS4 produced from GGPP and FPP. (a) GC-MS analysis (ion chromatogram) of the LoTPS4 enzyme product from GGPP. (b) GC-MS analysis (ion chromatogram) of products obtained from assays with LoTPS4 and FPP. (c, d, e, f) Mass spectra of Peak 1, Peak 2, Peak 3 and Peak 4. Di-epi-α-cedrene (Peak 1), α-cubebene (Peak 2): trans-α-bergamotene (Peak 3) and (E)-β-farnesene (Peak 4).
Fig. 3 in Molecular cloning, characterization and expression analysis of LoTPS2 and LoTPS4 involved in floral scent formation in oriental hybrid Lilium variety 'Siberia'
Fig. 3. (a) GC-MS analysis of products produced from assays with extracts of the empty vector and GPP. (b) Analysis (total ion chromatogram) of the product of the LoTPS4 enzyme generated from GPP (c) Total ion chromatogram of the D-limonene authentic standard. (d) Mass spectrum of the Peak 3 (e) Mass spectrum of Dlimonene in the floral scent of Lilium 'Siberia' (f) Mass spectrum of the D-limonene authentic standard (g, h, I and j) Mass spectra of Peak 1, Peak 2, Peak 4 and Peak 5. β-Phellandrene (Peak 1), β-myrcene (Peak 2), D-limonene (Peak 3), 3-Carene (Peak 4) and (+)-4-Carene (Peak 5).
Fig. 10 in Molecular cloning, characterization and expression analysis of LoTPS2 and LoTPS4 involved in floral scent formation in oriental hybrid Lilium variety 'Siberia'
Fig. 10. Subcellular localization of LoTPS2 and LoTPS4. Confocal laser scanning microscopy of LoTPS2 and LoTPS4 was performed by using EGFP fusion proteins in Arabidopsis protoplasts. The full-length coding region and the N-terminal 80 amino acids of the coding region of LoTPSs were fused to the GFP reporter gene in the p35 S vector to generate the p35 S-LoTPSs/GFP construct. The red column shows chlorophyll autofluorescence; the green column shows GFP fluorescence; the merged columns show combined GFP fluorescence and chlorophyll autofluorescence; and the BF columns represent bright field images. The names of the constructs are given on the left. HcTPS7 from H. coronarium was used as a marker. Scale bars: 5 μm. (For interpretation of the references to color in this figure legend, the reader is referred to the Web version of this article.)
Fig. 2 in Molecular cloning, characterization and expression analysis of LoTPS2 and LoTPS4 involved in floral scent formation in oriental hybrid Lilium variety 'Siberia'
Fig. 2. GC-MS analysis of products generated by LoTPS2. (a) GC-MS analysis (total ion chromatogram) of the products obtained by incubating extracts of the empty vector (control) with geranyl pyrophosphate. (b) GC-MS analysis (total ion chromatogram) of the LoTPS2 enzyme with GPP. (c) GC–MS analysis (total ion chromatogram) of the LoTPS2 enzyme with farnesyl pyrophosphate showing (E, E)-α- farnesene as the sole product. (d) Mass spectrum of the peak. (e) Mass spectrum of (E, E)-α-farnesene in the NIST08 library.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.