Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
159
datasets available to search
ShareScore release 0.9.0
Dataset results
159 results for “code prediction”
Code for GMD publication - Introducing Graupel Density Prediction in Weather Research and Forecasting (WRF) Double-Moment 6-Class (WDM6) Microphysics and Evaluation of the Modified Scheme During the ICE-POP Field Campaign
<p>Code for GMD publication - <span>Introducing Graupel Density Prediction in Weather Research and Forecasting (WRF) Double-Moment 6-Class (WDM6) Microphysics and Evaluation of the Modified Scheme During the ICE-POP Field Campaign</span></p> <p>In this repository, we include the source codes for WRF microphysics parameterization used in the GMD publication "Simulated Prognostic approach of graupel density in a bulk-type cloud microphysics scheme and evaluation during the ICE-POP field campaign."</p> <p>The revised WDM6 code, which predicts the graupel density and the original WDM6 code are uploaded. </p> <p>Each code is modified so that detailed microphysical processes can be found in wrfout.</p> <p>Namelist files shows the namelist.input for each case.</p> <p>Furthermore, scripts for figures in the manuscript are included, along with wrfout files.</p>
Data and code for, "Predicting self-assembly of sequence-controlled copoly- mers with stochastic sequence variation"
Open the record for dataset details and reuse information.
The source code for a new capillary and adsorption‒force model predicting hydraulic conductivity of soil during freeze‒thaw processes
<p>The source code is related to "A New Capillary and Adsorption‒Force Model Predicting Hydraulic Conductivity of Soil during Freeze‒thaw Processes" (Shufeng Qiao, Rui Ma, Yunquan Wang, Ziyong Sun, Helen Kristine French, Yanxin Wang)</p>
Code and Data for "Global Surface Eddy Mixing Ellipses: Spatio-temporal Variability and Machine Learning Prediction" By Jing et al. Submitted to Journal of Geophysical Research: Oceans.
<p>This repository contains the code and data for the study of "Global Surface Eddy Mixing Ellipses: Spatio-temporal Variability and Machine Learning Prediction" By Jing et al. Submitted to Journal of Geophysical Research: Oceans.</p> <p>Specifically, this repository contains the following items: </p> <p>(1) The codes needed for assessing the representation and prediction skills of Random Forest (RF) and Convolutional Neural Network (CNN) models. </p> <p>(2) Original and normalized data to run these codes.</p> <p>(3) Code here is built on early work from our laboratory (Guan et al., 2022; Zhang et al., 2023), though great modifications have been made tailored to our scientific question.</p> <div>[1] Guan, W., Chen, R., Zhang, H., Yang, Y., & Wei, H. (2022). Seasonal surface eddy mixing in the Kuroshio Extension: Estimation and machine learning prediction. Journal of Geophysical Research: Oceans, 127 (3), e2021JC017967.</div> <div>[2] Zhang, G., Chen, R., Li, X., Li, L., Wei, H., & Guan, W. (2023). Temporal variability of global surface eddy diffusivities: Estimates and machine learning prediction. Journal of Physical Oceanography, 53 (7), 1711–1730.</div>
Data and code for manuscript: The performance and potential of deep learning for predicting species distributions
<p>This repository contains the (preprocessed) data and code for the publication titled "The performance and potential of deep learning for predicting species distributions".</p>
Using Machine Learning With Supplementary NC Code To Predict Machining Energy - Excel Documents
<p>The Excel Files Housed within this DOI represent the raw data collected during machining each of the test parts, and the excel documents made which prevent model summaries for each model created., during the execution of the, "Using Machine Learning With Supplementary NC Code to Predict Machining Energy. These files were created by Samuel D. Stencel, a Graduate Research Assistant and Purdue University.</p>
Data and codes for predictability experiments
<p>It consists of two parts. <br> One part is the initial conditions and code of 5VCM, and the other part is the experimental processing data and drawing code of 5VCM, FOAM, and CM2.1.</p>
Predicting readers' prototypical eye-movement behavior using MASC, a model of Attention in the Superior Colliculus: Stimulus materials, model code, data, and statistical analyses.
<p>The goal of the present research was to determine the role of rudimentary visuo-motor pathways, from the retina and the primary visual cortex to the superior colliculus (SC), in the guidance of human eye movement during reading. To this end, we used MASC, our model of Attention in the Superior Colliculus (Adeli et al., Journal of Neuroscience 2017), a model that relies on well-established saccade-programming principles in the SC. MASC predicts sequences of fixations over an input image by spatially integrating incoming signals in the space of the SC.</p> <p>Here, MASC computed the distribution of luminance contrast over sentences' images (visual-saliency map), after blurring it proportional to retinal eccentricity (retina transformation). It then projected the visual-saliency map into SC space, using a logarithmic afferent-mapping function (magnification factor). Input signals were averaged over retinotopically organized populations of neurons (point images) of constant size, first in the visual map and then in a spatially-registered motor map. The most active population was identified through a winner-take-all process. After jitter applied to the winning population, the next fixation location was determined using inverse efferent mapping. This sequence of events was then repeated to predict following fixation locations, but inserting after each saccade an inhibitory spatial tag (Inhibition of Saccade Return; ISR -referred to as IOR in the uploaded files). All MASC's parameters, but one, were biologically determined, using electrophysiological data in macaque; the ISR window was the one fit parameter.</p> <p>MASC was tested by comparing its predicted sequences of fixations over sentences from the French-Sentence Corpus (FSC) to the eye-movement behavior of 40 French-native speakers reading the same sentences for comprehension (Albrengues et al., Plos One 2019). Then, MASC was dissected to determine the crucial processing steps enabling prediction of human behavior (10 comparison models -see the general README file). Finally, to address crucial issues in the reading literature, i.e., the role of inter-word spacing and character print size in eye-movement guidance, MASC was additionally tested in four additional display conditions: the same sentences from the FSC, but with blank spaces between words being either filled or removed, or with the screen width angle being multiplied by 2 or 4, such that characters were larger in angular size (0.5° and 1°) than in the original experiment (0.25°). MASC's predicted effects of inter-word spacing and print size were compared to previously published data.</p> <p>All material relevant to the project is reported here, including the FSC materials (bitmap and information text files), the Matlab code for our MASC model, raw simulation data for MASC and all our comparison models, as well as MASC's simulations in the different display conditions, the scripts we developed in R to transform raw simulation data into data matrices for statistical analyses of (word-based) eye-movement behavior, the resulting data matrices for all models as well as the data matrix for FSC readers, the R-scripts for statistical comparison of oculomotor behavior between data sets and conditions, literature-review tables of previously published data (for comparison with MASC's predictions), and the R-scripts generating the figures summarizing our results.</p> <p>Further information can be found in the general README file as well as in the README files attached to each folder. The authors' respective contributions to the project, the licence attached to the included materials and their condition of use are listed in the general README file.</p> <p>A manuscript reporting and discussing these modeling data is in preparation (Vitu, F., Adeli, H. & Zelinsky, G. J.); A reference will be provided here when the manuscript appears in a journal.</p> <p>Other references to be cited:</p> <p>- For the model code: Adeli, H., Vitu, F., & Zelinsky, G. J. (2017). A model of the superior colliculus predicts fixation locations during scene viewing and visual search. Journal of Neuroscience, 37(6), 1453-1467. http://www.jneurosci.org/content/37/6/1453</p> <p>- For FSC materials and data: Albrengues, C., Lavigne, F., Aguilar, C., Castet, E., & Vitu, F. (2019). Linguistic processes do not beat visuo-motor constraints, but they modulate where the eyes move regardless of word boundaries: Evidence against top-down word-based eye-movement control during reading. PLoS ONE 14(7): e0219666. https://doi.org/10.1371/journal.pone.0219666<br> </p>
A Predictive Coding Approach to Modelling Perceived Drum Pattern Complexity
<p>Commented <em>R</em> script and matrices to carry out drum pattern complexity prediction.</p>
Data and Code from "Structure-based prediction of Ras-effector binding affinities and design of 'branchegetic' interface mutations"
<p>Data, data generation and data analysis for manuscript "Structure-based prediction of Ras-effector binding affinities and design of ‘branchegetic’ interface mutations", currently available as a preprint <a href="https://doi.org/10.1101/2022.09.04.506480">here</a>.</p> <p>Contains the following directories:</p> <ul> <li>01_models: Contains all scripts for model generation and selection, as well as some of the generated and selected models. <ul> <li>01_inputs: The different inputs for the homology modelling pipeline. This includes AlphaFold single and complex templates, PDB templates and sequence alignments.</li> <li>02_validation: Model generation and initial selection for validation models, based on AF2 single models and PDB complex models.</li> <li>03_production1: Model generation and initial selection for Ras effector complexes, based on AF2 single models and PDB complex models.</li> <li>04_production2: Model generation and initial selection for Ras effector complexes, based on AF2 single models and AF2 complex models.</li> <li>05_selection_optics: Code and analysis for selection by unsupervised learning using OPTICS.</li> </ul> </li> <li>02_selected_models: The three representative models selected for each complex.</li> <li>03_affinity_prediction: Contains code and data for the prediction of binding affinities for Ras effector complexes.</li> <li>04_branch_pruning: Contains code and data for branch pruning analysis.</li> <li>05_systems_analysis: Contains code and data for the analysis of Ras effector systems based on affinities derived from affinity prediction and branch pruning analysis.</li> <li>06_visualization: Information on where in the raw data the panels for the figures in the manuscript can be found.</li> </ul>
Code for: Comparison and interpretability of machine learning models to predict severity of chest injury
Open the record for dataset details and reuse information.
Predictive utility of task-related functional connectivity vs. voxel activation - Data and code archive
Open the record for dataset details and reuse information.
Data and code from: Network theory predicts ecosystem robustness across environmental conditions
Open the record for dataset details and reuse information.
Data and code for "Predicting evaporation in stream temperature models – Penman, Dalton or something else?"
<p>The uploaded files contain the data set and code used in an empirical evaluation of the application of the Penman equation for predicting evaporation from streams.</p> <ul> <li>Fishtrap_for_stream_evap_analysis.csv - data set used in the analysis</li> <li>streamEvapAnalysis_final.r - code used to analyse the data</li> </ul>
Dataset and codes for "BaHSYM: parsimonious Bayesian Hierarchical Model to predict river Sediment Yield"
<p>This folder contains:</p> <ul> <li>R project file</li> <li>R code for Best Fit model</li> <li>R code for temporal cross-validation</li> <li>R code for spatial cross-validation</li> <li>R code for cluster analysis</li> <li>dataset containing all input variables for the river gauges (and catchments) used for the development and testing of the BaHSYM model in Austria</li> </ul> <p>It also contains the same codes and datasets adapted to reproduce the model by de Vente et al. (2011), i.e. with the same structure but with the variables used in such model.</p>
Codes and datasets associated with the paper "Day-ahead Wind Power Predictions at Regional Scales: Post-processing Operational Weather Forecasts with a Hybrid Neural Network"
<p>The jupyter notebooks and datasets associated with the EEM20 forecasts are available here. More details will be provided shortly. </p> <p>Please check the EEM20 website (<a href="https://eem20.eu/forecasting-competition/">https://eem20.eu/forecasting-competition/</a>) for the details of the forecasting competition. </p>
Data and code archive for 'Time perception and patience: Individual differences in interval timing precision predict choice impulsivity in European starlings, Sturnus vulgaris'
<p>Data and code for Andrews et al. '<strong>Time perception and patience: Individual differences in interval timing precision predict choice impulsivity in European starlings, <em>Sturnus vulgaris'</em></strong></p> <p>Version of November 02 2020</p> <p>The data are presented here with different degrees of processing (i.e. from every trial on every day by every bird separately in 'timing data.Rdata', to one summary row per bird in 'timing data by bird.csv'). Separate scripts do the processing, fit polynomials, reproduce the by-bird analyses in the paper, and run the numerical model. Please see the document 'Description of R scripts and files' for details of the different versions of the data and what each script does.</p> <p> </p>
Data and Code for: Proximal microclimate: moving beyond spatiotemporal resolution improves ecological predictions
<p>Data and code corresponding to analyses and figures for the paper in review.</p>
data and code for the funding prediction task
<p>data and code for the funding prediction task</p>
Data and codes for the precipitation prediction
<p>Data and codes for the precipitation prediction task in Hubei Province</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.