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Data from: The changing uses of herbarium data in an era of global change: an overview using automated content analysis
Widespread specimen digitization has greatly enhanced the use of herbarium data in scientific research. Publications using herbarium data have increased exponentially over the last century. Here, we review changing uses of herbaria through time with a computational text analysis of 13,702 articles from 1923 to 2017 that quantitatively complements traditional review approaches. Although maintaining its core contribution to taxonomic knowledge, herbarium use has diversified from a few dominant research topics a century ago (e.g., taxonomic notes, botanical history, local observations), with many topics only recently emerging (e.g., biodiversity informatics, global change biology, DNA analyses). Specimens are now appreciated as temporally and spatially extensive sources of genotypic, phenotypic, and biogeographic data. Specimens are increasingly used in ways that influence our ability to steward future biodiversity. As we enter the Anthropocene, herbaria have likewise entered a new era with enhanced scientific, educational, and societal relevance.
Fig. 4 in Corosolic acid content and SSR markers in Lagerstroemia speciosa (L.) Pers.: A comparative analysis among populations across the Southern Western Ghats of India
Fig. 4. HPTLC profile of (a) MeOH extract of L. speciosa (LS1197) of population 7 (b) CRA standard.
Fig. 1 in Corosolic acid content and SSR markers in Lagerstroemia speciosa (L.) Pers.: A comparative analysis among populations across the Southern Western Ghats of India
Fig. 1. Chemical structure of corosolic acid (CRA).
Supplementary material 1 from: Gonzalez Cruz J, Johnson M (2024) Towards a spectrum of dissent: A content analysis of Hawai'i's invasive species media. NeoBiota 92: 315-348. https://doi.org/10.3897/neobiota.92.115766
Coding protocol
Supplementary material 2 from: Gonzalez Cruz J, Johnson M (2024) Towards a spectrum of dissent: A content analysis of Hawai'i's invasive species media. NeoBiota 92: 315-348. https://doi.org/10.3897/neobiota.92.115766
Included media list
CONTENT ANALYSIS OF APPEALS RECEIVED AT THE VIRTUAL AND PUBLIC RECEPTION CENTRES OF THE PRESIDENT OF THE REPUBLIC OF UZBEKISTAN RELATED TO THE HEALTH SECTOR
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Figures 28-31 from: Klimaszewski J, Morency M, Labrie P, Seguin A, Langor D, Work T, Bourdon C, Thiffault E, Pare D, Newton A (2013) Molecular and microscopic analysis of the gut contents of abundant rove beetle species (Coleoptera, Staphylinidae) in the boreal balsam fir forest of Quebec, Canada. ZooKeys 353: 1-24. https://doi.org/10.3897/zookeys.353.5991
Figures 28-31 - Images of hindgut content of the following rove beetle species: 28–30 Tachinus fumipennis (Say) 31 Tachinus quebecensis Robert.
Figures 12-15 from: Klimaszewski J, Morency M, Labrie P, Seguin A, Langor D, Work T, Bourdon C, Thiffault E, Pare D, Newton A (2013) Molecular and microscopic analysis of the gut contents of abundant rove beetle species (Coleoptera, Staphylinidae) in the boreal balsam fir forest of Quebec, Canada. ZooKeys 353: 1-24. https://doi.org/10.3897/zookeys.353.5991
Figures 12-15 - Images of hindgut content of the following rove beetle species: 12–13 Atheta capsularis Klimaszewski 14–15 Atheta klagesi Bernhauer.
Figures 8-11 from: Klimaszewski J, Morency M, Labrie P, Seguin A, Langor D, Work T, Bourdon C, Thiffault E, Pare D, Newton A (2013) Molecular and microscopic analysis of the gut contents of abundant rove beetle species (Coleoptera, Staphylinidae) in the boreal balsam fir forest of Quebec, Canada. ZooKeys 353: 1-24. https://doi.org/10.3897/zookeys.353.5991
Figures 8-11 - Body images of rove beetles in dorsal view: 8 Tachinus frigidus Erichson 9 Tachinus fumipennis (Say) 10 Tachinus quebecensis Robert 11 Pseudopsis subulata Herman.
Figures 2-7 from: Klimaszewski J, Morency M, Labrie P, Seguin A, Langor D, Work T, Bourdon C, Thiffault E, Pare D, Newton A (2013) Molecular and microscopic analysis of the gut contents of abundant rove beetle species (Coleoptera, Staphylinidae) in the boreal balsam fir forest of Quebec, Canada. ZooKeys 353: 1-24. https://doi.org/10.3897/zookeys.353.5991
Figures 2-7 - Body images of rove beetles in dorsal view: 2 Atheta capsularis Klimaszewski 3 Atheta klagesi Bernhauer 4 Oxypoda grandipennis (Casey) 5 Bryophacis smetanai Campbell 6 Ischnosoma longicorne (Mäklin) [previously cited as synonymous Ischnosoma fimbriatum Campbell] 7 Mycetoporus montanus Luze [previously cited as synonymous Mycetoporus rugosus Hatch].
Figures 20-23 from: Klimaszewski J, Morency M, Labrie P, Seguin A, Langor D, Work T, Bourdon C, Thiffault E, Pare D, Newton A (2013) Molecular and microscopic analysis of the gut contents of abundant rove beetle species (Coleoptera, Staphylinidae) in the boreal balsam fir forest of Quebec, Canada. ZooKeys 353: 1-24. https://doi.org/10.3897/zookeys.353.5991
Figures 20-23 - Images of hindgut content of the following rove beetle species: 20 Ischnosoma longicorne (Mäklin) 21–22 Mycetoporus montanus Luze 23 Tachinus frigidus Erichson.
Figures 32-35 from: Klimaszewski J, Morency M, Labrie P, Seguin A, Langor D, Work T, Bourdon C, Thiffault E, Pare D, Newton A (2013) Molecular and microscopic analysis of the gut contents of abundant rove beetle species (Coleoptera, Staphylinidae) in the boreal balsam fir forest of Quebec, Canada. ZooKeys 353: 1-24. https://doi.org/10.3897/zookeys.353.5991
Figures 32-35 - Images of hindgut content of the following rove beetle species: 32–33 Tachinus quebecensis Robert 34–35 Pseudopsis subulata Herman.
Figures 24-27 from: Klimaszewski J, Morency M, Labrie P, Seguin A, Langor D, Work T, Bourdon C, Thiffault E, Pare D, Newton A (2013) Molecular and microscopic analysis of the gut contents of abundant rove beetle species (Coleoptera, Staphylinidae) in the boreal balsam fir forest of Quebec, Canada. ZooKeys 353: 1-24. https://doi.org/10.3897/zookeys.353.5991
Figures 24-27 - Images of hindgut content of the following rove beetle species: 24–26 Tachinus frigidus Erichson 27 Tachinus fumipennis (Say).
Figures 16-19 from: Klimaszewski J, Morency M, Labrie P, Seguin A, Langor D, Work T, Bourdon C, Thiffault E, Pare D, Newton A (2013) Molecular and microscopic analysis of the gut contents of abundant rove beetle species (Coleoptera, Staphylinidae) in the boreal balsam fir forest of Quebec, Canada. ZooKeys 353: 1-24. https://doi.org/10.3897/zookeys.353.5991
Figures 16-19 - Images of hindgut content of the following rove beetle species: 16 Oxypoda grandipennis (Casey) 17–18 Bryophacis smetanai Campbell 19 Ischnosoma longicorne (Mäklin).
Effect of Caloric Content and Timing of Meal on Postprandial Substrate Oxidation and Pulse Wave Analysis
ClinicalTrials.gov study NCT07122765. IPD Sharing: YES. Countries: 1. Publications: 0.
Data from: The changing uses of herbarium data in an era of global change: an overview using automated content analysis
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Data from: National citation patterns of NEJM, The Lancet, JAMA and The BMJ in the lay press: a quantitative content analysis
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Analysis of the genome content of Lactococcus garvieae by genomic interspecies microarray hybridization
GEO Series GSE19005. Streptococcus pneumoniae; Lactococcus lactis subsp. lactis Il1403; Lactococcus garvieae; Lactococcus lactis subsp. lactis. 32 samples. Type: Genome variation profiling by array.
Understanding the role of myoglobin content in Iberian pigs fattened in an extensive system through analysis of the transcriptome profile
GEO Series GSE178915. Sus scrofa. 12 samples. Type: Expression profiling by high throughput sequencing.
Muscle transcriptome analysis identifies genes involved in ciliogenesis and in the molecular cascade associated with intramuscular fat content in Large White heavy pigs.
GEO Series GSE144780. Sus scrofa. 12 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.