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124
datasets available to search
ShareScore release 0.9.0
Dataset results
124 results for “de novo genome”
Characterisation of EZH2 and H3K27me3 genome-wide distribution in de novo transformed cells (ChIP-Seq)
GEO Series GSE126396. Homo sapiens. 18 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
A novel aCGH method for non-model organisms for assessing genomes and de-novo transcriptome sequencing reads
GEO Series GSE52122. Danio rerio; Staphylococcus aureus. 45 samples. Type: Genome variation profiling by genome tiling array; Genome variation profiling by array.
Early Genomic Amplifications in Blood-Stages of ARMD Plasmodium falciparum Acquiring De Novo Drug Resistance [Expression]
GEO Series GSE35949. Plasmodium falciparum; Plasmodium falciparum Dd2. 12 samples. Type: Expression profiling by array.
Integrated genomic analyses of de novo pathways underlying atypical meningiomas
GEO Series GSE91376. Homo sapiens. 144 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by genome tiling array; Non-coding RNA profiling by high throughput sequencing.
De novo genome assembly of faba bean (Vicia faba L.) leaf transcriptome provide novel insights into the drought stress tolerance mechanisms
GEO Series GSE292422. Vicia faba. 6 samples. Type: Expression profiling by high throughput sequencing.
A novel aCGH method for non-model organisms for assessing genomes and de-novo transcriptome sequencing reads (Danio rerio)
GEO Series GSE52121. Danio rerio. 12 samples. Type: Genome variation profiling by array.
Early Genomic Amplifications in Blood-Stages of ARMD Plasmodium falciparum Acquiring De Novo Drug Resistance
GEO Series GSE35950. Plasmodium falciparum; Plasmodium falciparum Dd2. 24 samples. Type: Expression profiling by array; Genome variation profiling by array.
Genome-wide DNA methylation in MDS/secondary AML and de novo AML
GEO Series GSE17328. Homo sapiens. 64 samples. Type: Methylation profiling by genome tiling array.
Maternal DNMT3A-dependent de novo methylation of the zygotic paternal genome inhibits gene expression in the early embryo
GEO Series GSE141877. Mus musculus. 18 samples. Type: Methylation profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Stepwise de novo establishment of inactive X chromosome architecture in early development [Embryo genomic DNA]
GEO Series GSE213266. Mus musculus. 11 samples. Type: Other.
Array based comparative genomic hybridisation analysis of 1 Mb resolution of 21 follicular lymphomas (FL), 31 transformed diffuse large B-cells lymphomas (DLBCL), 29 de novo DLBCL (10 of GC and 19 non
GEO Series GSE56884. Homo sapiens. 81 samples. Type: Genome variation profiling by array.
A novel aCGH method for non-model organisms for assessing genomes and de-novo transcriptome sequencing reads (Staphylococcus aureus)
GEO Series GSE51148. Staphylococcus aureus. 33 samples. Type: Genome variation profiling by genome tiling array.
HP1 drives de novo 3D genome reorganization in early Drosophila embryos (ChIP-seq)
GEO Series GSE140539. Drosophila melanogaster. 64 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
HP1 drives de novo 3D genome reorganization in early Drosophila embryos
GEO Series GSE140542. Drosophila melanogaster. 94 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other; Expression profiling by high throughput sequencing.
De Novo Assembly of Plasmodium knowlesi Genomes From Clinical Samples Explains the Counterintuitive Intrachromosomal Organization of Variant SICAvar and kir Multiple Gene Family Members
<p>Published DOI: <a href="https://doi.org/10.3389/fgene.2022.855052">https://doi.org/10.3389/fgene.2022.855052</a></p> <p>Supporting data for the attached publication. De Novo assembled genomes of <em>Plasmodium knowlesi</em> generated using Nanopore long reads. Supporting statistical results are included. Variant call files from structural variant calls are attached for each genome. Additionally, statistical results from BUSCO, QUAST, Pomoxis and AGAT are included. Annotation files in GFF3 format including further analyses of these annotation files are attached. Scripts for post analysis are attached with scripts for data generation presented on Github repository: "Pknowlesi_denovo_genome_assembly"</p>
Early Genomic Amplifications in Blood-Stages of ARMD Plasmodium falciparum Acquiring De Novo Drug Resistance [Genome variation]
GEO Series GSE35732. Plasmodium falciparum; Plasmodium falciparum Dd2. 12 samples. Type: Genome variation profiling by array.
De novo genome sequencing and comparative stage-specific transcriptome analysis of Dirofilaria repens
GEO Series GSE128572. Dirofilaria repens. 6 samples. Type: Expression profiling by high throughput sequencing.
Targeting STAT3-FoxO1 axis reverses de novo and acquired PARP inhibitor resistance independent of BRCA status. [Whole-genome seq]
GEO Series GSE213855. Homo sapiens. 2 samples. Type: Other.
De novo assembly and annotation of the singing mouse genome
GEO Series GSE212957. Scotinomys teguina. 17 samples. Type: Expression profiling by high throughput sequencing; Other.
De novo assembled individual genome does not show advantage against standard reference genome: a demonstration of Chinese Han Population
GEO Series GSE121013. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.