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Dataset results
138 results for “emulation”
Data from: An affordable apparatus for fine‐controlled emulation of buzzing frequencies of bees for the testing hypothesis in buzz interactions
Open the record for dataset details and reuse information.
Emulating a target trial of statin use and risk of dementia using cohort data
Open the record for dataset details and reuse information.
Intervention with metabolites emulating endogenous cell transitions accelerates muscle regeneration in young and aged mice
GEO Series GSE145933. Mus musculus. 30 samples. Type: Expression profiling by high throughput sequencing.
Effect of 3D cultivation of human mesenchymal stomal cells to emulate the bone marrow niche microenvironment
GEO Series GSE277163. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing.
“Reprogram enablement” as an assay for identifying pivotal early oncogenic pathways by their ability to allow neoplastic cells to reacquire a normal epiblast-emulating state: evidence from human thyro
GEO Series GSE154280. Homo sapiens. 10 samples. Type: Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing.
C/EBPβ-induced lymphoid-to-myeloid transdifferentiation emulates granulocyte-monocyte progenitor (GMP) biology
GEO Series GSE248415. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.
Data from: A simple biophysical model emulates budding yeast chromosome condensation
Mitotic chromosomes were one of the first cell biological structures to be described, yet their molecular architecture remains poorly understood. We have devised a simple biophysical model of a 300 kb-long nucleosome chain, the size of a budding yeast chromosome, constrained by interactions between binding sites of the chromosomal condensin complex, a key component of interphase and mitotic chromosomes. Comparisons of computational and experimental (4C) interaction maps, and other biophysical features, allow us to predict a mode of condensin action. Stochastic condensin-mediated pairwise interactions along the nucleosome chain generate native-like chromosome features and recapitulate chromosome compaction and individualization during mitotic condensation. Higher order interactions between condensin binding sites explain the data less well. Our results suggest that basic assumptions about chromatin behavior go a long way to explain chromosome architecture and are able to generate a molecular model of what the inside of a chromosome is likely to look like.
Real-time emulation of leafy vegetables yield and quality response to 2℃ warming in northeast China
<p>Datasets necessary to reproduce main results in the paper.</p>
Neural Network Radiation Emulator (KMA/NIMS), December
<p>The dataset is a part of https://doi.org/10.5281/zenodo.5220712 (December)</p>
Neural Network Radiation Emulator (KMA/NIMS), May
<p>The dataset is a part of https://doi.org/10.5281/zenodo.5220712 (May)</p>
Toward emulating an explicit organic chemistry mechanism with a random forest model: dataset and training code
<p>This repository contains the dataset created with the GECKO-A model and the code (training_gecko_rf_final.py) used to train and test random forests for predicting secondary organic aerosol formation.</p> <p>For each simulation, results are distributed in two separate files identified as such:</p> <ul> <li><precursor>_library_<id>_predictors.csv and <precursor>_library_<id>_outcomes.csv.</li> <li><precursor> is either ARO1 (toluene) or dodecane_4gen (dodecane).</li> <li><id> is a unique simulation identifier.</li> <li>the *predictors.csv files contain the state of the predictors for each timestep at the beginning of the chemical solver integration step.</li> <li>the *outcomes.csv files contain the state of the outcomes at the end of the chemical solver integration step.</li> </ul> <p>The TRAINING_* directories contain training simulations. TRAINING_ALL contains all the training data, used for the default random forest configuration. TRAINING_*NOX contain sorted training data matching LOW, MID and HIGH NOx initial regimes (see associated article) to train the specialized random forests.</p> <p>Similarly, the VALIDATION_* directories contain validation simulations, used to test the random forests after training.</p> <p>The TESTING* directories contain the results of testing the random forest for comparison with the VALIDATION simulations.</p>
Twice High Dose External Beam Radiotherapy by Image-guided Tomotherapy for Organ-confined Prostate Cancer Treatment Emulating High Dose Radiation (HDR) Brachytherapy
ClinicalTrials.gov study NCT03553212. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Emulating the PIONEER6 Diabetes Trial Using Healthcare Claims
ClinicalTrials.gov study NCT06659679. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Emulated Study of Vitamin D Correction Vs Non-Correction
ClinicalTrials.gov study NCT06366776. IPD Sharing: NO. Countries: 1. Publications: 0.
Cefiderocol vs Best Available Therapy for Carbapenem-resistant Acinetobacter Baumannii-calcoaceticus Complex Infections: A Target Trial Emulation
ClinicalTrials.gov study NCT07226557. IPD Sharing: NO. Countries: 1. Publications: 0.
Emulation of the FLAURA (NCT02296125) Trial Using Specialty Oncology Electronic Health Records Databases
ClinicalTrials.gov study NCT06675695. IPD Sharing: NO. Countries: 1. Publications: 0.
Emulation of the MONALEESA-2 Trial Using Specialty Oncology Electronic Health Records Databases
ClinicalTrials.gov study NCT07274709. IPD Sharing: Not stated. Countries: 1. Publications: 0.
The Impact of Methylprednisolone Sodium Succinate on Postoperative Delirium in Elderly Patients Undergoing Abdominal Surgery: A Target Trial Emulation Study
ClinicalTrials.gov study NCT07271394. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Emulation of the MONARCH-3 Trial Using Specialty Oncology Electronic Health Records Databases
ClinicalTrials.gov study NCT07225790. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Harmonizing RCT-Duplicate Emulations In A Real World Replication Program (HARRP)
ClinicalTrials.gov study NCT06099067. IPD Sharing: YES. Countries: 1. Publications: 0.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.