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FIGURE 2 in A new section and a new species of Alternaria encountered from Oman
FIGURE 2. Alternaria omanensis (SQUCC 13580, ex-type). a–e, h, i. Conidia and conidiophores (Arrow indicates new emerging conidium). f, g Mature conidia. Scale bars: a, e, f = 20 μm. g, h = 10 μm. Scale bar of a applies to a-d. Scale bar of h applies to h-i.
FIGURE 2 in A new section and a new species of Alternaria encountered from Oman
FIGURE 2. Alternaria omanensis (SQU H-105, holotype) a–b. Ascomata on host substrate. c–d. Section of ascoma (TS). e. Close up of peridium. f–i. Asci with 8-spores. k–j. Muriform, brown ascospores. Scale bars: c, e = 100 μm. f = 25 μm. j, k = 10 μm. Scale bar of c applies to c-d. Scale bar of f applies to f-i.
Figure 3 in Vocal communication in the striped field mouse, Apodemus agrarius, in dyadic encounters and intraspecific cage groups
Figure 3. Examples of the calls resembling clucks: (A) shorter and more rapidly modulated and (B) longer and slightly modulated.
Figure 2 in Vocal communication in the striped field mouse, Apodemus agrarius, in dyadic encounters and intraspecific cage groups
Figure 2. Harsh calls produced by Apodemus agrarius at (A) threatening postures and (B) harsh calls (the second, third and fifth signals) alternated by calls, resembling clucks (the first and fourth signals).
Figure 1 in Vocal communication in the striped field mouse, Apodemus agrarius, in dyadic encounters and intraspecific cage groups
Figure 1. Examples of the vocal sounds produced by Apodemus agrarius in response to (A) opponent approach and (B) during attacks and fights.
Dyadic encounter unfamiliar female pairs over 2 days – 16p11.2 Del mouse strain – WT-WT - 5202_5191
<p>We evaluated the social interactions and communication between unfamiliar individuals in pairs. For these recordings of social behaviour and ultrasonic communication, we focused on pairs of individuals since we currently cannot identify the emitter of USVs when animals were interacting closely. Therefore, we recorded undisturbed dyadic interactions between two unfamiliar individuals (from two different housing cages) of the same age (14-20 weeks of age) and genotype for 47h (two days and nights). For that purpose, we coupled the Live Mouse Tracker system (plugin 931) with one CM16/CMPA microphone (Avisoft Bioacoustics, Glienecke, Germany) connected to the Avisoft Ultrasound Gate 416 (300 kHz sampling rate, 16-bit format; trigger: level of this channel; pre-trigger: 1 s; hold time: 1 s; duration > 0.005 s; trigger event: 2 % energy in 25-125 kHz with entropy < 50%; Avisoft Bioacoustics, Glienecke, Germany). LMT and Avisoft systems were synchronised based on the protocol described in (de Chaumont et al., 2021). Each upload includes the sqlite database from LMT (processed, with USV synchronised) and a zip file with all USVs sequences automatically recorded by Avisoft.</p>
Dataset for Runaway and Hypervelocity Stars from Compact Object Encounters in Globular Clusters
<p>The dataset used for Cabrera & Rodriguez 2023. If building from the showyourwork-enabled GitHub, the file can be directly unzipped into the <code>src/data</code> folder.</p> <p>The top-level contains folders for <code>CMC</code> model- and Milky Way globular cluster-delineated data (<code>cmc</code> and <code>mwgcs</code>, respectively), and some auxiliary files, including the composite catalogs. Within the two folders are subfolders for each of the <code>CMC</code> models and MWGCs. The <code>CMC</code> model folders contain some of the output files from the <code>CMC Cluster Catalog</code> <a href="https://ui.adsabs.harvard.edu/abs/2020ApJS..247...48K">(Kremer+20</a>) (used in this project to examine GC evolution), and also two files <code>output_N-10.txt</code> (which has data for all <code>Fewbody</code> realizations for the model) and <code>output_N-10_ejections.txt</code> (which has data for all ejections from the model). The columns in the former file are regrettably not labeled, but correspond to the following parameters, many of which are direct <code>Fewbody</code> arguments:</p> <table align="center"> <thead> <tr> <th scope="col">#</th> <th scope="col">Parameter</th> <th scope="col">Description</th> <th scope="col">Units</th> </tr> </thead> <tbody> <tr> <td>1</td> <td>time</td> <td>Physical time of encounter in <code>CMC </code>model</td> <td>Myr</td> </tr> <tr> <td>2</td> <td>b</td> <td>Impact parameter</td> <td>a1</td> </tr> <tr> <td>3</td> <td>vinf</td> <td>Velocity of single object at infinity</td> <td>v_crit</td> </tr> <tr> <td>4</td> <td>a1</td> <td>Initial semi-major axis of binary</td> <td>AU</td> </tr> <tr> <td>5</td> <td>e1</td> <td>Initial binary eccentricity</td> <td>-</td> </tr> <tr> <td>6</td> <td>vesc</td> <td>Local escape velocity in <code>CMC </code>model</td> <td>km/s</td> </tr> <tr> <td>7</td> <td>m10</td> <td>Mass of first binary component</td> <td>Msun</td> </tr> <tr> <td>8</td> <td>m11</td> <td>Mass of second binary component</td> <td>Msun</td> </tr> <tr> <td>9</td> <td>m0</td> <td>Mass of single object</td> <td>Msun</td> </tr> <tr> <td>10</td> <td>r10</td> <td>Radius of first binary component</td> <td>Rsun</td> </tr> <tr> <td>11</td> <td>r11</td> <td>Radius of second binary component</td> <td>Rsun</td> </tr> <tr> <td>12</td> <td>r0</td> <td>Radius of single object</td> <td>Rsun</td> </tr> <tr> <td>13</td> <td>k10</td> <td>BSE k-type of first binary component</td> <td>-</td> </tr> <tr> <td>14</td> <td>k11</td> <td>BSE k-type of second binary component</td> <td>-</td> </tr> <tr> <td>15</td> <td>k0</td> <td>BSE k-type of single object</td> <td>-</td> </tr> <tr> <td>16</td> <td>s</td> <td>Random seed for <code>Fewbody</code></td> <td>-</td> </tr> <tr> <td>17</td> <td>type_i</td> <td> <p>Index classifying initial system (see below)</p> </td> <td>-</td> </tr> <tr> <td>18</td> <td>type_f</td> <td>Index classifying final system (see below)</td> <td>-</td> </tr> <tr> <td>19</td> <td>v_crit</td> <td>Critical velocity of encounter (<a href="https://ui.adsabs.harvard.edu/abs/2004MNRAS.352....1F/abstract">Fregeau+04</a>)</td> <td>km/s</td> </tr> <tr> <td>20</td> <td>a_fin</td> <td>Final semi-major axis of binary (0 if no binary is present)</td> <td>AU</td> </tr> <tr> <td>21</td> <td>e_fin</td> <td>Final binary eccentricity (identically 0 if no binary is present)</td> <td>-</td> </tr> <tr> <td>22</td> <td>Lx</td> <td>x-component of the initial angular momentum of the system</td> <td>code</td> </tr> <tr> <td>23</td> <td>Ly</td> <td>y-component of the initial angular momentum of the system</td> <td>code</td> </tr> <tr> <td>24</td> <td>Lz</td> <td>z-component of the initial angular momentum of the system</td> <td>code</td> </tr> <tr> <td>25</td> <td>Lbinx</td> <td>x-component of the angular momentum of the initial binary</td> <td>code</td> </tr> <tr> <td>26</td> <td>Lbiny</td> <td>y-component of the angular momentum of the initial binary</td> <td>code</td> </tr> <tr> <td>27</td> <td>Lbinz</td> <td>z-component of the angular momentum of the initial binary</td> <td>code</td> </tr> <tr> <td>28</td> <td>Ei</td> <td>Initial energy of the encounter</td> <td>code</td> </tr> <tr> <td>29</td> <td>DeltaEfrac</td> <td>Fractional change in energy by the time of termination</td> <td>-</td> </tr> <tr> <td>30/34/38</td> <td>vfin0/1/2</td> <td>Final velocity of the final top-level object with<code> Fewbody </code>index 0/1/2 (<a href="https://ui.adsabs.harvard.edu/abs/2004MNRAS.352....1F/abstract">Fregeau+04</a>)</td> <td>v_crit</td> </tr> <tr> <td>31/35/39</td> <td>kf0/1/2</td> <td>BSE k-type of the same</td> <td>-</td> </tr> <tr> <td>32/36/40</td> <td>Rmin0/1/2</td> <td>Minimum distance between this object and any other object during the encounter</td> <td>AU</td> </tr> <tr> <td>33/37/41</td> <td>Rmin_j0/1/2</td> <td><code>Fewbody </code>index of the other object at closest passage</td> <td>AU</td> </tr> </tbody> </table> <p>The initial encounter classifying indices are as follows, where "C" denotes a compact object and "S" a star:</p> <table align="center"> <thead> <tr> <th scope="col">type_i</th> <th scope="col">Configuration</th> </tr> </thead> <tbody> <tr> <td>1</td> <td>(C,C)+S</td> </tr> <tr> <td>2</td> <td>(C,S)+C</td> </tr> <tr> <td>3</td> <td>(C,S)+S</td> </tr> <tr> <td>4</td> <td>(S,S)+C</td> </tr> </tbody> </table> <p>The final encounter classifying indices are as follows, using the initial <code>Fewbody </code>object indices to specify if objects end up in a binary ((a,b)) or if they merge (a:b) (note that <code>Fewbody</code> initializes all binary-single encounters in the <code>type_f=3</code> configuration, i.e. the object index 0 is assigned to the single):</p> <table align="center"> <thead> <tr> <th scope="col">type_f</th> <th scope="col">Configuration</th> </tr> </thead> <tbody> <tr> <td>0</td> <td>0+1+2 (Ionization)</td> </tr> <tr> <td>1</td> <td>(0,1)+2</td> </tr> <tr> <td>2</td> <td>(0,2)+1</td> </tr> <tr> <td>3</td> <td>0+(1,2)</td> </tr> <tr> <td>4</td> <td>0:1+2</td> </tr> <tr> <td>5</td> <td>0:2+1</td> </tr> <tr> <td>6</td> <td>1:2+0</td> </tr> <tr> <td>7</td> <td>0:1:2</td> </tr> <tr> <td>-2</td> <td>binary</td> </tr> <tr> <td>-3</td> <td>hierarchical triple</td> </tr> </tbody> </table> <p>The columns in <code>output_N-10_ejections.txt</code> are labeled, and use many of the same headers in the first table; the object indices for fields 30-41 are dropped because each row in this file corresponds to an escaper. The two additions are <code>mf</code> and <code>rf</code>, which indicate the mass and radius of the ejected object.</p> <p>Each of the <code>mwgcs</code> folders contain the FITS files described in Appendix B of the text. There are also <code>output_N-10_ejections.txt</code> files similar to the ones for the <code>CMC</code> models; the MWGC versions contain the additional fields below:</p> <table align="center"> <thead> <tr> <th scope="col">Parameter</th> <th scope="col">Description</th> <th scope="col">Units</th> </tr> </thead> <tbody> <tr> <td>vout</td> <td>Velocity of object at the time of ejection from the representative model</td> <td>km/s</td> </tr> <tr> <td>X/Y/Z</td> <td>Galactocentric X/Y/Z coordinate of object at the present day</td> <td>kpc</td> </tr> <tr> <td>U/V/W</td> <td>Galactocentric U/V/W velocity of object at the present day</td> <td>km/s</td> </tr> </tbody> </table> <p> </p>
Characterization and amelioration of filtration difficulties encountered in metabolomic studies of Clostridium thermocellum at elevated sugar concentrations
<p>Datasets and python codes to generate figures for the research paper published in Applied and Environmental Microbiology (DOI:10.1128/aem.00406-23).</p>
FIGURE 7 in A taxonomic revision of Neodietrichia (Araneae: Linyphiidae), a rarely encountered but widespread spider taxon
FIGURE 7. All known collection locations of Neodietrichia. Open circles represent Neodietrichia hesperia. Filled circles represent Neodietrichia depressum n. comb.
FIGURE 5 in A taxonomic revision of Neodietrichia (Araneae: Linyphiidae), a rarely encountered but widespread spider taxon
FIGURE 5. Illustrations of Neodietrichia depressum n. comb. (MM 6D15, Indiana, Johnson Co.). A, Male left palp, ventral view; B, male carapace, lateral view; C, male left palpal tibial apophysis, retrolateral view; D, male left palpal embolic division, prolateral view; E, male left palpal tibial apophysis, dorsal view; F, same, variation; G, epigynum, ventral view; H, epigynum, cleared dorsal view. R, radix; E, embolus; Pt, protegulum; RA, radical apophysis; T, tegulum; P, paracymbium; TbA, tibial apophysis; Su, sulci; K, keel; H, hood; S, spermathecae; CO, copulatory openings; MP, median plate; CD, copulation ducts; FD, fertilization ducts.
FIGURE 6 in A taxonomic revision of Neodietrichia (Araneae: Linyphiidae), a rarely encountered but widespread spider taxon
FIGURE 6. Variation in male palpal tibial apophyses in Neodietrichia hesperia. Illustrations represent retrolateral views.
FIGURE 4 in A taxonomic revision of Neodietrichia (Araneae: Linyphiidae), a rarely encountered but widespread spider taxon
FIGURE 4. Photographs of Neodietrichia depressum n. comb. (MM 6D15, Indiana, Johnson Co.). A, Male habitus; B, male left palp, ventral view; C, male left palp, prolateral view; D, male left palp, dorsal view; E, male left palp, retrolateral view; F, female habitus; G, epigynum, ventral view; H, epigynum, cleared dorsal view. Scale bars represent 0.25mm.
FIGURE 2 in A taxonomic revision of Neodietrichia (Araneae: Linyphiidae), a rarely encountered but widespread spider taxon
FIGURE 2. Photographs of Neodietrichia hesperia (Male: MCZ 140958, Maine: Washington Co.; Female: RB, Ohio: Vinton Co.). A, Male habitus; B, male left palp, ventral view; C, male left palp, prolateral view; D, male left palp, dorsal view; E, male left palp, retrolateral view; F, female habitus; G, epigynum, ventral view; H, epigynum, cleared dorsal view. Scale bars represent 0.25mm.
FIGURE 8 in A taxonomic revision of Neodietrichia (Araneae: Linyphiidae), a rarely encountered but widespread spider taxon
FIGURE 8. Variation in male palpal tibial apophyses in Neodietrichia depressum n. comb. Illustrations represent retrolateral views. The number of spines on the tibial apophysis is variable and does not appear to be geographically correlated.
FIGURE 1 in A taxonomic revision of Neodietrichia (Araneae: Linyphiidae), a rarely encountered but widespread spider taxon
FIGURE 1. SEM micrograph of the lateral view of the carapace of Neodietrichia depressum n. comb. (MM 6D15, Indiana, Johnson Co.). Arrow indicates substance filling pit. S, sulci.
FIGURE 10 in A taxonomic revision of Neodietrichia (Araneae: Linyphiidae), a rarely encountered but widespread spider taxon
FIGURE 10. Neighbor-joining phylogenetic tree showing relationships between Neodietrichia species and populations based on p-distances derived from cytochrome c oxidase subunit I sequences. Bootstrap values (from 500 replicates) are indicated on the branches.
Datasets for: Inactivation mechanisms of Influenza A virus under pH conditions encountered in aerosol particles as revealed by whole-virus HDX-MS.
<p>Datasets associated with the publication '<strong>Inactivation mechanisms of Influenza A virus under pH conditions encountered in aerosol particles as revealed by whole-virus HDX-MS</strong>', published by mSphere [DOI: <a href="http://dx.doi.org/10.1128/msphere.00226-23">10.1128/msphere.00226-23</a>]</p> <p>Data included here encompasses infectivity (IAV and VSV), RT-qPCR , and HDX-MS datasets. </p> <p>The raw mass spectrometry proteomics data have been deposited to the ProteomeXchange Consortium via the PRIDE partner repository with the dataset identifier PXD037176.</p>
ISW encountered with rough shelf slope in experimental flume
<p>This dataset studies the breaking process of internal solitary waves on rough slopes by conducting laboratory internal wave flume experiments. High-resolution velocity and density field data were obtained by Particle Image Velocimetry (PIV) and Planer Laser-induced fluorescence (PLIF). The breaking parameters and turbulent structure are analyzed, and the laws of water mixing and energy dissipation induced by internal solitary wave breaking under different roughness conditions are summarized. ‘SM’, ‘HM’, ‘CY’, ‘TR’, ‘CS’ stands for different rough bottom cases shown in Excel. The number '8' represents 8cm of collapse height.</p>
Patient Outcomes of Clinic Transition From Face to Face Encounter to Telemedicine in Cystic Fibrosis
ClinicalTrials.gov study NCT04402801. IPD Sharing: Not stated. Countries: 1. Publications: 2.
ClotFoam as an Adjunct to Hemostasis in Abdominal Surgery - Liver Bleeding is Encountered
ClinicalTrials.gov study NCT02264730. IPD Sharing: Not stated. Countries: 1. Publications: 1.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.