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414 results for “generative model”
Supplementary Data for "A framework for the construction of generative models for mesoscale structure in multilayer networks"
<p>Supplementary Data for "A framework for the construction of generative models for mesoscale structure in multilayer networks"</p>
Data and scripts used in: "Exploring Biological Neuronal Correlations with Quantum Generative Models"
<div>Data and script for the manuscript "Exploring Biological Neuronal Correlations with Quantum Generative Models", by Vinicius Hernandes and Eliska Greplova.</div> <h3>main scripts</h3> <div> <p><strong><em>generate_activity_dataset.py</em></strong></p> <p>reshape data in <em>neuronData.npy</em> to 50k samples of (neurons, timesteps) shape, saved in <em>activity_data.npy</em></p> <p><strong><em>create_target_distributions.py</em></strong></p> <p>based on the dataset, makes dicionary with the the target distribution for each (neurons, timesteps) pair, saved in <em>distribution_target_dictionary.pkl</em></p> <p><strong><em>create_hyperparameters_file.py</em></strong></p> <p>generates <em>hyperparameters.csv</em>, containing:</p> </div> <ul> <li>number of neurons</li> <li>number of timesteps</li> <li>number of auxiliary_qubits</li> <li>batch_size</li> <li>learning rate of generator</li> <li>learning rate of critic</li> <li>number parametrized layers</li> <li>number of training iterations</li> <li>loss type</li> </ul> <p>for each run</p> <p><strong><em>train_qgan.py</em></strong></p> <div> <p>trains models defined <em>models.py</em> using <em>activity_data.npy</em> dataset, and for the hyperparameters defined in <em>hyperparameters.csv</em></p> </div> <div>saves loss functions, and the trained models for each 10 iterations, in specific folders indexed by the run specified in the hyperparameters file</div> <div> </div> <div><strong><em>generate_fake_activity.py</em></strong></div> <div> </div> <div>uses trained models saved in <em>output/models/run{run}/i{training_step}.pth</em> for a specific <em>training_step</em> and <em>run</em> to generate fake data, and save them in <em>output/generated_data/run{run}/i{training_step}.npy</em> files</div> <div> </div> <div><strong><em>analyze_error.py</em></strong></div> <div> </div> <div>uses generated data saved in <em>output/generated_data/run{run}/i{training_step}.npy</em> to generate two statistical quantities (k-probs and firing rate), using the function in <em>metrics.py</em>, and compare the errors in those quantities between the models using k-loss and standard-loss</div> <div> </div> <div><strong><em>analyze_stats.py</em></strong></div> <div> </div> <div>uses generated data saved in <em>output/generated_data/run{run}/i{training_step}.npy</em> to generate:</div> <ul> <li>js diverge for each training step, and final distribution of generated states, stored in <em>distribution_target_dictionary.pkl</em></li> <li>other statistical quantities, using the function in <em>metrics.py</em> file</li> </ul> <h3>auxiliary scripts</h3> <div><strong><em>metrics.py</em></strong></div> <div> </div> <div>functions to calculate neuronal statistics</div> <div> </div> <div><strong><em>aux.py</em></strong></div> <div> </div> <div>auxiliary functions:</div> <ul> <li>to generate states distribution given a dataset</li> <li>custom js divergence</li> </ul> <h3>Data</h3> <p><strong><em>neuronData.npy</em></strong></p> <p>neuronal data from Marre et al., Multi-electrode array recording from salamander retinal ganglion cells (2017)</p> <p><strong><em>activity_data.npy</em></strong></p> <p>dataset obtained from <em>neuronData.npy</em>, taking 50 thousand samples of shape (neurons, timesteps)</p> <p><strong><em>output</em></strong></p> <p>results obtained from <em>train_qgan.py</em> and <em>generate_fake_activity.py</em> </p> <p>contains:</p> <ul> <li><strong><em>losses</em></strong></li> </ul> <p>generator and critic loss for all training runs and steps</p> <ul> <li><strong><em>models</em></strong></li> </ul> <p>saved torch models every 10 training steps, for all training runs</p> <ul> <li><strong><em>generated_data</em></strong></li> </ul> <p>generated data for all models saved in <em>models</em></p>
Data and model output for "Evidence of subsurface control on the coevolution of hillslope morphology and runoff generation"
<p>Data, model output, and scripts supporting the manuscript:</p> <p>Litwin, D. G., & Harman, C. J. (2024) Evidence of subsurface control on the coevolution of hillslope morphology and runoff generation. <em>Water Resources Research</em>, 60, e2024WR037301. https://doi.org/10.1029/2024WR037301</p>
Potential map generated by the RF spatial model to define ideal zones for the occurrence of high density of giant trees in the Amazon
<p>The provided image is a theoretical map of giant tree density in the Amazon, generated from a spatial model based on the **Random Forest** algorithm. The map displays the spatial distribution of tree density, representing the number of trees taller than 60 meters per square kilometer (trees/km²). The model was developed using climatic, topographic, and soil variables to predict areas with higher concentrations of these giant trees.</p> <p>The areas are color-coded according to different density ranges, where:<br>- Lighter shades indicate lower tree density (≤ 5 trees/km²),<br>- Darker shades indicate higher density (up to 141 trees/km²).</p> <p>Biogeographic provinces within the Amazon biome, such as the **Guiana Shield**, **Xingu-Tapajós**, and **Roraima**, are highlighted, showing distinct density patterns across the Amazon region. This map is a valuable tool for understanding the spatial distribution of giant trees in the Amazon and plays a crucial role in conservation efforts and ecological monitoring in the region.</p>
Geoparsing with Large Language Models: Leveraging the linguistic capabilities of generative AI to improve geographic information extraction
<h2>Geoparsing with Large Language Models</h2> <p>The .zip file included in this repository contains all the code and data required to reproduce the results from our paper. Note, however, that in order to run the OpenAI models, users will required an OpenAI API key and sufficient API credits.</p> <div> <h3>Data</h3> <p>The data used for the paper are in the <code>datasetst</code> and <code>results</code> folders.</p> <ul> <li> <p>**Datasets: **This contains the XML files (LGL and Geovirus) and Json files (News2024) used to benchmark the models. It also contains all the data used to fine-tune the gpt-3.5 model, the prompt templates sent to the LLMs, and other data used for mapping and data creation.</p> </li> <li> <p>**Results: **This contains the results for the models on the three datastes. The folder is separated by dataset, with a single <code>.csv</code> file giving the results for each model on each dataset separately. The <code>.csv</code> file is structured so that each row contains either a predicted toponym and an associated true toponym (along with assigned spatial coordinates), if the model correctly identified a toponym; otherwise the true toponym columns are empty for false positives and the predicted columns are empty for false negatives.</p> </li> </ul> <h3>Code</h3> <p>The code is split into two seperate folders <code>gpt_geoparser</code> and <code>notebooks</code>.</p> <ul> <li>**GPT_Geoparser: **this contains the classes and methods used process the XML and JSON articles (<code>data.py</code>), interact with the Nominatim API for geocoding (<code>gazetteer.py</code>), interact with the OpenAI API (<code>gpt_handler.py</code>), process the outputs from the GPT models (<code>geoparser.py</code>) and analyse the results (<code>analysis.py</code>).</li> <li><strong>Notebooks</strong>: This series of notebooks can be used to reproduce the results given in the paper. The file names a reasonably descriptive of what they do within the context of the paper.</li> </ul> <h3>Code/software</h3> <h3>Requirements</h3> <ul> <li>Numpy</li> <li>Pandas</li> <li>Geopy</li> <li>Scitkit-learn</li> <li>lxml</li> <li>openai</li> <li>matplotlib</li> <li>Contextily</li> <li>Shapely</li> <li>Geopandas</li> <li>tqdm</li> <li>huggingface_hub</li> <li>Gnews</li> </ul> <h3>Access information</h3> <p>Other publicly accessible locations of the data:</p> <ul> <li>The LGL and GeoVirus datasets can also be obtained <a href="https://github.com/milangritta/Pragmatic-Guide-to-Geoparsing-Evaluation" target="_blank" rel="noopener">here<span> (opens in new window)</span></a>.</li> </ul> <h3>Abstract</h3> <div> <p>Geoparsing- the process of associating textual data with geographic locations - is a key challenge in natural language processing. The often ambiguous and complex nature of geospatial language make geoparsing a difficult task, requiring sophisticated language modelling techniques. Recent developments in Large Language Models (LLMs) have demonstrated their impressive capability in natural language modelling, suggesting suitability to a wide range of complex linguistic tasks. In this paper, we evaluate the performance of four LLMs - GPT-3.5, GPT-4o, Llama-3.1-8b and Gemma-2-9b - in geographic information extraction by testing them on three geoparsing benchmark datasets: GeoVirus, LGL, and a novel dataset, News2024, composed of geotagged news articles published outside the models' training window. We demonstrate that, through techniques such as fine-tuning and retrieval-augmented generation, LLMs significantly outperform existing geoparsing models. The best performing models achieve a toponym extraction F1 score of 0.985 and toponym resolution accuracy within 161 km of 0.921. Additionally, we show that the spatial information encoded within the embedding space of these models may explain their strong performance in geographic information extraction. Finally, we discuss the spatial biases inherent in the models' predictions and emphasize the need for caution when applying these techniques in certain contexts.</p> </div> <h3>Methods</h3> <div> <p>This contains the data and codes required to reproduce the results from our paper. The LGL and GeoVirus datasets are pre-existing datasets, with references given in the manuscript. The News2024 dataset was constructed specifically for the paper. </p> <p>To construct the News2024 dataset, we first created a list of 50 cities from around the world which have population greater than 1000000. We then used the GNews python package <a href="https://pypi.org/project/gnews/" target="_blank" rel="noopener">https://pypi.org/project/gnews/<span> (opens in new window)</span></a> to find a news article for each location, published between 2024-05-01 and 2024-06-30 (inclusive). Of these articles, 47 were found to contain toponyms, with the three rejected articles referring to businesses which share a name with a city, and which did not otherwise mention any place names.</p> <p>We used a semi autonmous approach to geotagging the articles. The articles were first processed using a Distil-BERT model, fine tuned for named entity recognicion. This provided a first estimate of the toponyms within the text. A human reviewer then read the articles, and accepted or rejected the machine tags, and added any tags missing from the machine tagging process. We then used OpenStreetMap to obtain geographic coordinates for the location, and to identify the toponym type (e.g. city, town, village, river etc). We also flagged if the toponym was acting as a geo-political entity, as these were reomved from the analysis process. In total, 534 toponyms were identified in the 47 news articles. </p> </div> </div>
Generative AI for designing and validating easily synthesizable and structurally novel antibiotics: Data and Models
<p>This repository contains data and models used in the following paper.</p> <p>Swanson, K., Liu, G., Catacutan, D., Zou, J. & Stokes, J. <a href="https://www.nature.com/articles/s42256-024-00809-7">Generative AI for designing and validating easily synthesizable and structurally novel antibiotics</a>. <em>Nature Machine Intelligence, </em>2024.</p> <p>The data and models are meant to be used with the <a href="https://github.com/swansonk14/SyntheMol">SyntheMol</a> code. More details about how to use the data and models with the code are available <a href="https://github.com/swansonk14/SyntheMol/tree/main/docs">here</a>.</p> <p>The Data.zip file has the following structure. Note that the numbers for the Data subdirectories correspond to the supplementary data numbers in the paper (e.g., 1_training_data corresponds to Supplementary Data 1).</p> <p>Data</p> <p> 1_training_data: The <em>Acinetobacter baumannii</em> inhibition data used to train antibiotic property prediction models.</p> <p> 2_chembl: Known antibiotic and antibacterial molecules from <a href="https://www.ebi.ac.uk/chembl/">ChEMBL</a>, which are used to compute the novelty of generated antibiotic candidates.</p> <p> 4_real_space: Data files and statistics for the <a href="https://enamine.net/compound-collections/real-compounds/real-space-navigator">Enamine REAL Space</a>. The molecular building blocks file is version 2021 q3-4 while all other REAL Space details are computed from the full enumerated REAL space version 2022 q1-2 (downloaded on August 30, 2022).</p> <p> 5_generations_clogp: Compounds generated by SyntheMol using Chemprop models trained to predict cLogP.</p> <p> 6_generations_chemprop: Compounds generated by SyntheMol using Chemprop models trained to predict <em>A. baumannii</em> inhibition.</p> <p> 7_generations_chemprop_rdkit: Compounds generated by SyntheMol using Chemprop-RDKit models trained to predict <em>A. baumannii</em> inhibition.</p> <p> 8_generations_random_forest: Compounds generated by SyntheMol using random forest models trained to predict <em>A. baumannii</em> inhibition.</p> <p> 9_synthesized: Information on the 58 SyntheMol-generated compounds that were successfully synthesized by Enamine.</p> <p>The Models.zip file contains one folder for each model used in the paper. Note that each model is technically an ensemble of ten individual models, so each directory contains ten model files.</p>
Training datasets for "Multi-purpose controllable protein generation via prompted language models"
<div> <p>The datasets used to tune modular prompts of PROPEND fall into three main categories based on their design objectives: tertiary structure, secondary structure, and functional annotation.</p> </div>
Conditional Neural Field Latent Diffusion Model for Generating Spatiotemporal Turbulence
Open the record for dataset details and reuse information.
Code and data for publication "pyGRETA, pyCLARA, pyPRIMA: A pre-processing suite to generate flexible model regions for energy system models"
<p>This dataset contains the code of the three pre-processing tools <a href="https://github.com/tum-ens/pyGRETA">pyGRETA</a>, <a href="https://github.com/tum-ens/pyPRIMA">pyPRIMA</a> and <a href="https://github.com/tum-ens/pyCLARA">pyCLARA</a> and an examplary database for the scope of Austria.</p> <p>To run the code with full functionality additional data is needed. Check the documentation of the tools for further information.</p> <p> </p> <p>Sources for data can be found here: </p> <p>pyGRETA: https://pygreta.readthedocs.io/en/stable/user_manual.html#recommended-input-sources</p> <p>pyPRIMA: https://pyprima.readthedocs.io/en/stable/user_manual.html#recommended-input-sources</p> <p>pyCLARA: https://pyclara.readthedocs.io/en/stable/user_manual.html#recommended-input-sources</p>
Quantum calculation results for "Automatically Generated Model for Light Alkene Combustion"
<p>This repository contains the quantum calculation results associated with the paper "Automatically Generated Model for Light Alkene Combustion" by Gianmaria Pio, Xiaorui Dong, Ernesto Salzano, and William H. Green.</p> <p>In the alkene_qm_data.zip, files are organized according to species. For each species, CBS-QB3 calculation is stored in the 'composite' folder, frequency calculation is stored in the 'freq' folder, and scan jobs for torsional modes (if available) are stored in the 'scan_XXXX' folders.</p> <p> </p>
Data for "Using an Uncertainty Quantification Framework to Calibrate the Runoff Generation Scheme in E3SM Land Model V1"
<p>The domain file and surface data file that used to run ELMv1, and processed ISIMP2a runoff data that used in <a href="https://gmd.copernicus.org/preprints/gmd-2021-401/">https://gmd.copernicus.org/preprints/gmd-2021-401/</a></p> <p>ELM_runoff_parameter_post.nc contains the ELM runoff generation relevant parameter posteriors at a global half degree spatial resolution.</p>
Performance and limits of a shallow-water model for landslide-generated tsunamis: from laboratory experiments to simulations of flank collapses at Montagne Pelée (Martinique) - DATASETS
<p>Datasets of the 6 presented experiments with 4mm beads presented in the paper "Performance and limits of a shallow-water model for landslide-generated tsunamis: from laboratory experiments to simulations of flank collapses at Montagne Pelée (Martinique)".</p> <p>Each datasets (csv file) corresponds to the hand picked profile of either the water free surface or the granular material at 0.1 second of interval. </p> <p>The third dataset for each experiment corespond of the gauges records.</p>
Data for HydrAMP - a deep generative model for antimicrobial peptide discovery
<ul> <li>data- training data for peptides < 25 AA (16.8 MB)</li> <li>models - checkpoints of HydrAMP, PepCVAE, and Basic models for every training epoch (466 MB)</li> <li>results - dumped generation results for every model. Required for running comparison notebooks (832 MB)</li> <li>wheels - custom TensorFlow packages (1 GB)</li> </ul> <p> </p>
GalSim-Hub Generative Model of COSMOS images
<p>This dataset contains trained weights for the generative model of COSMOS galaxies described in (Lanusse et al. 2020, https://arxiv.org/abs/2008.03833).</p> <p>It is meant to be used through the GalSim Hub library (https://github.com/McWilliamsCenter/galsim_hub), and accessed as:</p> <pre><code class="language-python">import galsim import galsim_hub from astropy.table import Table # Load a generative model from the online repository model = galsim_hub.GenerativeGalaxyModel('hub:Lanusse2020')</code></pre> <p> </p>
High-resolution digital elevation models and orthomosaics generated from historical aerial photographs (since the 1960s) of the Bale Mountains in Ethiopia
<p>This dataset contains the results of photogrammetric processing (Digital Elevation Models, Orthomosaics and subset data used for volumetric calculation and visualization) named: “DEM_1967.7z”: inside the zipped folder “1967_DEM.tif” (digital elevation model produced for the year 1967), “DEM_1984.7z”: inside the zipped folder “1984_DEM.tif” exist (digital elevation model produced for the year 1984). In addition, under “1967_Orthomosaic.7z" and "1984_Orthomosaic.7z” zipped folders, there are orthomosaic files produced namely, “1967_orthomosaic.tif” and "1984_orthomosaic.tif” for the year 1967 and 1984, respectively. The DEMs and Orthomosaics subset from the results for sites (data example 1 and data example 2) reside under "Data_Examples.zip". Accuracy of the resulted data were assessed and the extracted elevation values are under "Accuracy_assessment.zip". All DEMs and Orthomosaics are in GeoTIFF format in the Adindan UTM Zone 37 N (EPSG: 20137) projected coordinate system.</p> <p> Potential application of the presented dataset include:</p> <p>1. watershed management</p> <p>2. analyses of historical landscape change</p> <p>3. detailed mapping and analyses of geological and archaeological features, as well as natural resources</p> <p>4. analyses of geomorphological processes</p> <p>5. socioecological patterns and dynamics</p> <p>6. modelling and planning for telecommunications </p> <p>7. biodiversity research. </p> <p>The inputs for the above resulted DEMs and Orthomosaics are found under Zenodo repository "10.5281/zenodo.7271617". </p>
High-resolution digital elevation models and orthomosaics generated from historical aerial photographs (since the 1960s) of the Bale Mountains in Ethiopia
<p>This dataset contains the inputs used for Structure from Motion Multiview Stereo photogrammetry processing for the year 1967 and 1984 i.e Unprocessed scanned historical aerial Photographs, camera position coordinates, flight index and Ground Control Points. All the scanned historical aerial photographs data are in TIFF format except four photographs in JPEG format under a zipped folder ("1967_Scanned_HAPs_Part1.7z and 1967_Scanned_HAPs_Part2.7z" for the 1967 Historical Aerial Photographs and "1984_Scanned_HAPs_Part1.7z and 1984_Scanned_HAPs_Part2.7z" for the 1984 Historical Aerial Photographs). The "Flight_Index.Zip" contains shapefiles of the camera position and polygon of consecutive aerial photograph index; "GCP.Zip" contains text file of the GCPs used for the 1967 and 1984; and "Camera_Position.Zip" contains the file of the camera position (Label, Easting, Northing and Altitude) of each historical aerial photographs. </p> <p>The results of the above dataset could be accessible on Zenodo repository "10.5281/zenodo.7269999".</p> <p>Anyone can reuse the presented dataset to produce DEMs and Orthomosaics; and use for the following application areas:</p> <p>1. watershed management</p> <p>2. analyses of historical landscape change</p> <p>3. detailed mapping and analyses of geological and archaeological features, as well as natural resources</p> <p>4. analyses of geomorphological processes</p> <p>5. socioecological patterns and dynamics</p> <p>6. modelling and planning for telecommunications </p> <p>7. biodiversity research. </p> <p> </p>
Simulation outputs required to generate figures for "Modeling Multi-Scale Deformation Cycles in Subduction Zones with a Continuum Visco-Elastic-Brittle Framework"
<p>This file contains all of the model simulation outputs necessary to produce the figures for the paper "Modeling Multi-Scale Deformation Cycles in Subduction Zones with a Continuum Visco-Elastic-Brittle Framework".</p> <p>Below are the details of which file is required to produce which figure:</p> <p> </p> <p><strong>Figure 5 (De_dam_fields.pdf) </strong></p> <p><a href="https://zenodo.org/api/files/3150cf22-7ee4-4f5a-9cd4-b420ee0dbd91/De_dam_We_0_001_dt_10_5_th_10_10_alpha_4_ddam_10.tar.gz">De_dam_We_0_001_dt_10_5_th_10_10_alpha_4_ddam_10.tar.gz</a></p> <p> </p> <p><strong>Figure 6 (convergence.pdf)</strong></p> <p><a href="https://zenodo.org/api/files/3150cf22-7ee4-4f5a-9cd4-b420ee0dbd91/comp_dt_We_0_001_th_10_10_alpha_4_ddam10.tar.gz">comp_dt_We_0_001_th_10_10_alpha_4_ddam10.tar.gz </a></p> <p>Contains 4 files, each one for a different temporal resolution (delta t).</p> <p> </p> <p><strong>Figure C1 (convergence2.pdf, appendix)</strong></p> <p><a href="https://zenodo.org/api/files/3150cf22-7ee4-4f5a-9cd4-b420ee0dbd91/comp_dt_We_0_1_th_10_9_alpha_4_ddam10.tar.gz">comp_dt_We_0_1_th_10_9_alpha_4_ddam10.tar.gz </a></p> <p><a href="https://zenodo.org/api/files/3150cf22-7ee4-4f5a-9cd4-b420ee0dbd91/comp_dt_We_10_th_10_8_alpha_4_ddam10.tar.gz">comp_dt_We_10_th_10_8_alpha_4_ddam10.tar.gz </a></p> <p>Each contains 4 files, one for each temporal resolution (delta t).</p> <p> </p> <p><strong>Figure 7 (CPU_time.pdf)</strong></p> <p>No simulation output file: all of the necessary information (CPU times) are included in the associated MATLAB code, available in the Github repository.</p> <p> </p> <p><strong>Figure 8 (T_h.pdf)</strong></p> <p><strong>Left panels, a, c, e</strong></p> <p><a href="https://zenodo.org/api/files/3150cf22-7ee4-4f5a-9cd4-b420ee0dbd91/comp_th_We_0_001_dt_10_5_alpha_4_ddam_10.tar.gz">comp_th_We_0_001_dt_10_5_alpha_4_ddam_10.tar.gz </a></p> <p><a href="https://zenodo.org/api/files/3150cf22-7ee4-4f5a-9cd4-b420ee0dbd91/comp_th_We_0_1_dt_10_4_alpha_4_ddam_10.tar.gz">comp_th_We_0_1_dt_10_4_alpha_4_ddam_10.tar.gz </a></p> <p><a href="https://zenodo.org/api/files/3150cf22-7ee4-4f5a-9cd4-b420ee0dbd91/comp_th_We_10_dt_10_3_alpha_4_ddam_10.tar.gz">comp_th_We_10_dt_10_3_alpha_4_ddam_10.tar.gz </a></p> <p>Each contains 4 files, one for each healing time (T_h)</p> <p><strong>Right panels, b, d, f</strong></p> <p>comp_th_We_0_001_dt_10_5_th_10_11_alpha_4_ddam_10.tar.gz</p> <p>comp_th_We_0_001_dt_10_5_th_10_10_alpha_4_ddam_10.tar.gz</p> <p>comp_th_We_0_001_dt_10_5_th_10_9_alpha_4_ddam_10.tar.gz</p> <p>comp_th_We_0_001_dt_10_5_th_10_8_alpha_4_ddam_10.tar.gz</p> <p>comp_th_We_0_1_dt_10_4_th_10_11_alpha_4_ddam_10.tar.gz</p> <p>comp_th_We_0_1_dt_10_4_th_10_10_alpha_4_ddam_10.tar.gz</p> <p>comp_th_We_0_1_dt_10_4_th_10_9_alpha_4_ddam_10.tar.gz</p> <p>comp_th_We_0_1_dt_10_4_th_10_8_alpha_4_ddam_10.tar.gz</p> <p>comp_th_We_10_dt_10_3_th_10_11_alpha_4_ddam_10.tar.gz</p> <p>comp_th_We_10_dt_10_3_th_10_10_alpha_4_ddam_10.tar.gz</p> <p>comp_th_We_10_dt_10_3_th_10_9_alpha_4_ddam_10.tar.gz</p> <p>comp_th_We_10_dt_10_3_th_10_8_alpha_4_ddam_10.tar.gz</p> <p>Each contains 5 files, for 5 different realisations of the model simulations (same parameters, different initial noise on cohesion)</p> <p> </p> <p><strong>Figure 9 (comp_ddam_We_0_001.pdf)</strong></p> <p>comp_ddam_We_0_001_dt_10_5_th_10_10.tar.gz</p> <p>One file for each alpha value (2, 3, 4, 6, 8), one file for each delta d value (0.1, 0.3, 0.5, 0.7, 0.9)</p> <p> </p> <p><strong>Figure 10 (comp_ddam_We_0_1.pdf)</strong></p> <p>comp_ddam_We_0_1_dt_10_4_th_10_9.tar.gz</p> <p>One file for each alpha value (2, 3, 4, 6, 8), one file for each delta d value (0.1, 0.3, 0.5, 0.7, 0.9)</p> <p> </p> <p><strong>Figure 11 (discussion.pdf)</strong></p> <p>u_sfc_We_0_1_dt_10_4_th_10_9_alpha_4_ddam_10.tar.gz</p> <p>u_sfc_We_0_1_dt_10_4_th_10_9_alpha_4_ddam_50.tar.gz</p> <p> </p> <p><strong>SI movie</strong></p> <p>SI_movie.tar.gz</p>
Generative Machine Learning for Detector Response Modeling with a Conditional Normalizing Flow
<p>The samples are datasets used for testing in the scenarios: baseline (corr0.hdf5), correlation of 0.5 (corr50.hdf5), correlation of 1.0 (corr100.hdf5), and asymmetric detector responses (asymmetric.hdf5). Each file contains the conditional variables, generated and simulated detector responses, and generated and simulated reconstruction-level variables. </p>
Supporting data for Assessing clouds using satellite observations through three generations of global atmosphere models
<p>Monthly data from CAM4, CAM5, and CAM6 that are needed to reproduce the analysis and figures in the manuscript entitled: Assessing clouds using satellite observations through three generations of global atmosphere models by Brian Medeiros, Jonah Shaw, Jennifer Kay, and Isaac Davis.</p>
A Generic Model for Benchmark Aerodynamic Analysis of Fifth-Generation High-Performance Aircraft
<p>Openly available supplementary data to accompany paper https://doi.org/10.3390/aerospace10090746. Data set includes geometry, Pointwise (2022.1.2) and Fluent (2022R1) grid files and corrected experimental data for lift, drag and pitching moment at a freestream velocity of 20 m/s and standard sea level conditions for the SSAM-Gen5 model. When using this data, please cite:</p> <p>Giannelis, N.F.; Bykerk, T.; Vio, G.A. A Generic Model for Benchmark Aerodynamic Analysis of Fifth-Generation High-Performance Aircraft. Aerospace 2023, 10, 746.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.