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Dataset results
131 results for “genetic loci”
Data from: Genetic mapping of three quantitative trait loci for soybean aphid resistance in PI 567324
Host-plant resistance is an effective method for controlling soybean aphid (Aphis glycines Matsumura), the most damaging insect pest of soybean (Glycine max (L.) Merr.) in North America. Recently, resistant soybean lines have been discovered and at least four aphid resistance genes (Rag1, Rag2, Rag3 and rag4) have been mapped on different soybean chromosomes. However, the evolution of new soybean aphid biotypes capable of defeating host-plant resistance conferred by most single genes demonstrates the need for finding germplasm with multigenic resistance to the aphid. This study was conducted to map quantitative trait loci (QTL) for aphid resistance in PI 567324. We identified two major QTL (QTL_13_1 and QTL_13_2) for aphid resistance on soybean chromosome 13 using 184 recombinant inbred lines from a 'Wyandot' × PI 567324 cross. QTL_13_1 was located close to the previously reported Rag2 gene locus, and QTL_13_2 was close to the rag4 locus. A minor QTL (QTL_6_1) was also detected on chromosome 6, where no gene for soybean aphid resistance has been reported so far. These results indicate that PI 567324 possesses oligogenic resistance to the soybean aphid. The molecular markers closely linked to the QTL reported here will be useful for development of cultivars with oligogenic resistance that are expected to provide broader and more durable resistance against soybean aphids compared with cultivars with monogenic resistance.
Figure 1 from: Li Y, Lin L-S, Gao T-X (2018) Genetic signatures of polymorphic microsatellite loci in the Ambiguous silver pomfret, Pampus argenteus (Teleostei, Stromateidae). ZooKeys 810: 139-151. https://doi.org/10.3897/zookeys.805.25602
Figure 1 Locations (black circle) for sample collection of P.argenteus.
Polymorphisms at Distinct Genetic Loci Affect Response to Anti-CD20 Monoclonal Antibody Therapies
ClinicalTrials.gov study NCT02694913. IPD Sharing: NO. Countries: 1. Publications: 0.
Genetic identification, replication, and functional fine-mapping of expression quantitative trait loci in primary human liver tissue
GEO Series GSE26106. Homo sapiens. 748 samples. Type: Expression profiling by array; SNP genotyping by SNP array; Genome variation profiling by SNP array.
Chromatin accessibility mapping for GWAS risk loci reveals compound genetic effects of neurodevelopment and neurodegenerative disorders in human neurons
GEO Series GSE188491. Homo sapiens. 106 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Finding genetic loci that are sensitive to demethylation to assist in the development of DNA methylation-based in vitro assay for the identification of carcinogens
GEO Series GSE218911. Homo sapiens; Mesocricetus auratus. 34 samples. Type: Methylation profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Data from: Genome-wide associations identify novel candidate loci associated with genetic susceptibility to tuberculosis in wild boar
Open the record for dataset details and reuse information.
Data from: Genetic mapping of three quantitative trait loci for soybean aphid resistance in PI 567324
Open the record for dataset details and reuse information.
Data from: Genetic identification of Iberian rodent species using both mitochondrial and nuclear loci: application to non-invasive sampling
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A hidden layer of structural variation in transposable elements reveals potential genetic modifiers in human disease-risk loci
GEO Series GSE167409. Homo sapiens. 39 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Genetic and Epigenetic Fine Mapping of Complex Trait Associated Loci in the Human Liver
GEO Series GSE128072. Homo sapiens. 1794 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Genome-wide association studies identify novel genetic loci for epigenetic age acceleration among survivors of childhood cancer [Metadata_SJLIFE1_2138]
GEO Series GSE197674. Homo sapiens. 2138 samples. Type: Methylation profiling by genome tiling array.
Endogenous fine-mapping of functional regulatory elements in complex genetic loci in HAP1 [ATAC-seq]
GEO Series GSE285458. Homo sapiens. 5 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Genetic Analysis of opaque 2 Modifier Loci in Quality Protein Maize
GEO Series GSE10449. Zea mays. 4 samples. Type: Expression profiling by array.
Endogenous fine-mapping of functional regulatory elements in complex genetic loci in HAP1 [microC]
GEO Series GSE286224. Homo sapiens. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Genetic Loci and Metabolic States Associated With Murine Epigenetic Aging
GEO Series GSE199979. Mus musculus; Rattus norvegicus; Homo sapiens. 339 samples. Type: Methylation profiling by array.
Genetic regulatory mechanisms of smooth muscle cells map to coronary artery disease risk loci
GEO Series GSE113348. Homo sapiens. 60 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Systems genetics uncover new loci containing functional gene candidates in Mycobacterium tuberculosis-infected Diversity Outbred mice
GEO Series GSE267006. Mus musculus. 134 samples. Type: Expression profiling by array.
Gene expression quantitative trait loci (eQTL) study using the HB3×Dd2 genetic cross progeny of P. falciparum
GEO Series GSE12515. Plasmodium falciparum. 36 samples. Type: Expression profiling by array.
Multi-omics analysis in primary T cells elucidates mechanisms behind disease associated genetic loci
GEO Series GSE282992. Homo sapiens. 126 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.