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Fig. 2 in New genotypes and molecular characterization of Enterocytozoon bieneusi in pet birds in Southwestern China
Fig. 2. Phylogenetic tree based on the internal transcribed spacer (ITS) sequences obtained in this study in relation to published sequences from GenBank using ML methods. Enterocytozoon bieneusi genotypes identified in the present study are indicated in bold-type, and genotypes PtEbIX (DQ85585) and CD8 (KJ668735) from dogs were used as outgroups.
Fig. 1 in New genotypes and molecular characterization of Enterocytozoon bieneusi in pet birds in Southwestern China
Fig. 1. Sequence variation in the ITS region of the rRNA gene of Enterocytozoon bieneusi isolates from pet birds. The ITS sequences of five known genotypes (D, SC02, BEB6, CHB1, and MJ5) and the three novel genotypes (SCB-I, SCB-II, and SCB-III), identified in this study, were aligned with each other.
Fig. 1. Phylogenetic relationship among the Enterocytozoon bieneusi groups. The relationship between the E in New genotypes and molecular characterization of Enterocytozoon bieneusi in captive black bears in China
Fig. 1. Phylogenetic relationship among the Enterocytozoon bieneusi groups. The relationship between the E. bieneusi genotypes identified in this study and other known genotypes deposited in GenBank was inferred by neighbor-joining analysis of ITS sequences based on genetic distance using the Kimura-2-parameter model. The numbers on the branches represent percent bootstrapping values from 1000 replicates, with more than 50% shown in the tree. Each sequence is identified by its accession number, genotype designation, and host origin. Genotypes marked with black rhombuses and black triangles are novel and known genotypes identified in this study, respectively.
Figure 1 in Resistance of rice genotypes to fall armyworm Spodoptera frugiperda (Lepidoptera: Noctuidae)
Figure 1 Dendrogram resulting from UPGMA multivariate cluster analysis (Euclidian distance), based on the length of larval, pre-pupal, pupal periods and total cycle (days) and total viability (%) and parameters of nutritional indices (Table 4 and Table 5) on rice genotypes for resistance to Spodoptera frugiperda (Lepidoptera: Noctuidae).Urutaí, GO, Brazil.
Fig. 2 in Genotypes and zoonotic potential of Enterocytozoon bieneusi in edible bullfrogs (Lithobates catesbeiana) in China
Fig. 2. Phylogenetic tree based on Bayesian inference (BI) analysis of E. bieneusi ITS sequences. Statistically significant posterior probabilities are indicated on the branches. Known and novel E. bieneusi ITS genotypes identified in the present study are indicated by hollow and filled triangles, respectively.
Fig. 1. Phylogenetic relationships between the E in Molecular characterization and novel genotypes of Enterocytozoon bieneusi in pet snakes in Beijing, China
Fig. 1. Phylogenetic relationships between the E. bieneusi genotypes identified in this study and other reported genotypes. The relationships were inferred using maximum likelihood analysis of the ITS rRNA gene and the values generated greater than 70% are shown beside the nodes. Genotypes with filled circles and triangles are known and novel genotypes identified in this study, respectively.
Fig. 1 in Common occurrence of Enterocytozoon bieneusi genotypes SHR1 and PL2 in farmed masked palm civet (Paguma larvata) in China
Fig. 1. Phylogenetic relationships of the E. bieneusi genotypes. The relationships were inferred using NJ analysis of the ITS rRNA gene and the values generated greater than 70% are shown beside the nodes. Genotypes with hollow circles and filled circles are known and novel genotypes identified in this study, respectively.
Fig. 1 in Molecular detection and genotypes of Enterocytozoon bieneusi in farmed mink (Neovison vison), blue foxes (Alopex lagopus), and raccoon dogs (Nyctereutes procyonoides) in Xinjiang, China
Fig. 1. Phylogenetic relationships of the E. bieneusi genotypes. The relationships were inferred using NJ analysis of the ITS rRNA gene and the values generated greater than 50% are shown beside the nodes. Genotypes with hollow circles and filled circles are known and novel genotypes identified in this study, respectively.
Fig. 15 in Morphological description and multilocus genotyping of Onchocerca spp. in red deer (Cervus elaphus) in Switzerland
Fig. 15. Dendrogram of Onchocerca from this study, various other Onchocerca sequences and Litomosoides sigmodontis as an outgroup based on a dataset of 579 positions of the mitochondrial cox1 gene, estimated by using the Maximum Likelihood method and TN93 + G + I substitution model (Tamura and Nei, 1993). The tree with the highest log likelihood (– 2902.13) is shown. Bootstrap values over 50 are shown next to the branches. Sequences newly generated in this study are in bold.
Fig. 14 in Morphological description and multilocus genotyping of Onchocerca spp. in red deer (Cervus elaphus) in Switzerland
Fig. 14. Dendrogram of Onchocerca from this study, additional Onchocerca species and Setaria labiatopapillosa, Oswaldofilaria chabaudi and Icosiella neglecta as outgroups based on a dataset of 935 positions of the concatenated mitochondrial cox1 and 12S rDNA gene, estimated by using the Maximum Likelihood method and GTR + G + I substitution model (Nei and Kumar, 2000). The tree with the highest log likelihood (– 4758.48) is shown. Bootstrap values over 50 are shown next to the branches. Sequences newly generated in this study are in bold.
Fig. 10 in Morphological description and multilocus genotyping of Onchocerca spp. in red deer (Cervus elaphus) in Switzerland
Fig. 10. Onchocerca skrjabini: A. Head end of male, with undifferentiated oesophagus. B, C. Distribution of papillae on male tail of two different individuals. D. Lateral view of male tail with spicules in situ. E. Longer left and smaller right spicule. Right spicule in two views to show ventral groove in distal part: on right hand side in lateral view, on left hand side in ventral view, showing dorsolateral knob on tip. F. Female head end, with differentiated oesophagus, vulva in distal forth of oesophagus. G. Longitudinal section in small anterior part of female, showing unpaired part of uterus filling out anterior body with relatively large microfilaria in it. Cuticular ridges over striae in ratio 1: 4. H. Tail end of female, with two phasmids spaced apart. Fine cuticular transversal annulation is indicated. I. Tail end of a second female, lateral view (in smaller scale). Note slight club shape of both. J. Microfilaria (intrauterine) with fine striation hinted at the neck, subapical oval marking with ridges.
Fig. 7 in Morphological description and multilocus genotyping of Onchocerca spp. in red deer (Cervus elaphus) in Switzerland
Fig. 7. Onchocerca flexuosa: Heteromorphous cuticle of female: A. Onchocerca-similar cuticle in two layers, with fine striae in medulla, but lacking ridges on surface. B. Medullar waves without cuticular ridges. C. Entire cuticle forming transversal rings. D. Cuticle with repeated pattern of one bigger, followed by two smaller transversal rings.
Fig. 8 in Morphological description and multilocus genotyping of Onchocerca spp. in red deer (Cervus elaphus) in Switzerland
Fig. 8. Onchocerca flexuosa: Relation between vast internal space in body and thin intestine (i) and unpaired uterus forming loops (u).
Fig. 6. A in Morphological description and multilocus genotyping of Onchocerca spp. in red deer (Cervus elaphus) in Switzerland
Fig. 6. A. Onchocerca flexuosa female: Typical curly body freed from nodule tissue by digestion. B. In comparison a female of O. jakutensis after the same digestive treatment.
Fig. 3 in Morphological description and multilocus genotyping of Onchocerca spp. in red deer (Cervus elaphus) in Switzerland
Fig. 3. Onchocerca flexuosa: A. Head end of male. B. Spicules in situ with thorn like hook of right spicule protruded and tip of left spicule at proximal entrance of ventral groove of right spicule. C. Tail of male showing alae and distribution of papillae. D. Head end of female showing vulva with unpaired uterus, oesophagus-intestinal junction depicted and marked with dots at posterior end. Note loose course of uterus with loop. E. Head end of female with oesophagus and expansion of ovejector before vulva. F. Round tail end of female with spiky phasmid at base of flaps. G. Longitudinal section in posterior half of female body showing peculiar repetition of one bigger transversal cuticular ring (marked with dot at left), followed by two smaller rings. H, I. Microfilaria, in I in same scale as microfilaria in Fig. 10J as comparison.
Fig. 5 in Morphological description and multilocus genotyping of Onchocerca spp. in red deer (Cervus elaphus) in Switzerland
Fig. 5. Onchocerca flexuosa: Protruding right spicule showing massive hook (H) at dorsal side and groove (G) at ventral side, serving as a gubernaculum to fine tip of left spicule. L: tip of left spicule; R: right spicule.
Fig. 2 in Morphological description and multilocus genotyping of Onchocerca spp. in red deer (Cervus elaphus) in Switzerland
Fig. 2. Worm burden in situ of sternal skin in the process of digestion. Most of these worm fragments could be identified as Onchocerca skrjabini, no O. garmsi was found.
Fig. 1 in Morphological description and multilocus genotyping of Onchocerca spp. in red deer (Cervus elaphus) in Switzerland
Fig. 1. Onchocerca skrjabini in situ in carpal skin. A. Freshly cut piece of skin shown from inside (note turned around piece of fur on top). Added methylene blue stains the O. skrjabini specimens and makes them visible for the naked eye. B. Parasitic burden in the same piece of skin in process of digestion. Hair follicles seen as dark dots. Fragments of O. skrjabini show different body width. Note very thin anterior headends (arrows). (For interpretation of the references to colour in this figure legend, the reader is referred to the Web version of this article.)
Fig. 2 in Novel genotypes of Cryptosporidium and Enterocytozoon bieneusi detected in plateau zokors (Myospalax baileyi) from the Tibetan Plateau
Fig. 2. Phylogenetic relationships of E. bieneusi genotypes identified in the present study and other known genotypes deposited on GenBank was inferred by a maximum-likelihood phylogenetic analysis of ITS sequences using the Tamura 3-parameter model with 500 replicates. The Enterocytozoon hepatopenaei (GenBank: KR021167.1) was used as the outgroup. The blue triangle and squares indicate the novel genotypes identified in this study, respectively. (For interpretation of the references to colour in this figure legend, the reader is referred to the Web version of this article.)
Fig. 12 in Morphological description and multilocus genotyping of Onchocerca spp. in red deer (Cervus elaphus) in Switzerland
Fig. 12. Onchocerca skrjabini: two microfilariae protrude from broken frontal part of a female, showing very tight setting in small anterior body part in this species. Note subapical oval mark with protruding rim on head of microfilaria.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.