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155 results for “multilocus phylogeny”
Figure 4. A in Multilocus phylogeny and historical biogeography of the Crematogaster inflata-group (Hymenoptera: Formicidae) in South-East Asia
Figure 4. A, historical biogeography of the Crematogaster inflata-group based on BEAST2 and BioGeoBEARS analyses using the dispersal multiplier [Scheme (ii)] and two time slices. Blue horizontal bars depict the 95% highest posterior probability (HPD). Node labels N1–N11 correspond with denotations in Table 2. Biogeographical analysis employed a DEC model, with eight regions. The left-bottom map represents the Indo-Australian Archipelago delimited into eight areas. Colours of squares correspond to the coloured area on the map. Coloured squares indicate the most likely ancestral area recovered at each node. The present distribution of each species is given by coloured squares. B–D, palaeogeographic maps were redrawn and modified from Hall (2013): B, 15 Mya. C, 10 Mya. D, 5 Mya.
Figure 7 in Multilocus phylogeny and historical biogeography of the Crematogaster inflata-group (Hymenoptera: Formicidae) in South-East Asia
Figure 7. Characters of the Crematogaster inflata-group. A, mesosoma in profile view (C. difformis). B, mesosoma in profile view (C. mucronata). C, mesosoma in profile view (C. Ʋacca). D, arrow indicates comma-shaped metapleural gland opening in dorsolateral view (C. subcircularis).
Figure 6 in Multilocus phylogeny and historical biogeography of the Crematogaster inflata-group (Hymenoptera: Formicidae) in South-East Asia
Figure 6. Characters of the Crematogaser inflata-group. A, four-segmented antennal club (ii) (C. seaeardi). B, threesegmented antennal club (ii) (C. mucronata). C, swollen propodeum (iii) and circular-shaped metapleural gland opening (iv) (C. inflata). D, posterolateral denticles on the mesonotum (iii) and slit-shaped metapleural gland opening (iv) (C. modiglianii). E, oval petiole (v) and globular postpetiole (vi) in dorsal view (C. modiglianii). F, elliptical petiole (v) and globular postpetiole (vi) in dorsal view (C. seaeardi). G, subquadrate petiole (v) and globular postpetiole (vi) in dorsal view (C. mucronata).
Data from: Multilocus phylogeny and ecological differentiation of the “Eupelmus urozonus species group” (Hymenoptera, Eupelmidae) in the West-Palaearctic
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Data from: A multilocus molecular phylogeny for the avian genus Liocichla (Passeriformes: Leiothrichidae: Liocichla)
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Data from: Multilocus phylogeny and a new classification for Southeast Asian and Melanesian forest frogs (family Ceratobatrachidae)
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Data from: Multilocus phylogeny and revised classification for mountain dragons of the genus Japalura s.l. (Reptilia: Agamidae: Draconinae) from Asia
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Data from: Multilocus phylogeny and biogeography of the New World Pheucticus grosbeaks (Aves: Cardinalidae)
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A new sectional classification of Lachenalia (Asparagaceae) based on a multilocus DNA phylogeny
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Data from: Tracing horizontal Wolbachia movements among bees (Anthophila): a combined approach using multilocus sequence typing data and host phylogeny
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Data from: The phylogeny of pikas (Ochotona) inferred from a multilocus coalescent approach
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Data from: Multilocus phylogeny reveals unexpected diversification patterns in Asian Wolf Snakes (genus Lycodon)
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Data from: Multilocus phylogeny and Bayesian estimates of species boundaries reveal hidden evolutionary relationships and cryptic diversity in Southeast Asian monitor lizards
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Data from: Multilocus phylogeny of Gryllus field crickets (Orthoptera: Gryllidae: Gryllinae) utilizing anchored hybrid enrichment
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Data from: A new species of horned lizard (genus Phrynosoma) from Guerrero, México, with an updated multilocus phylogeny
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FIG. 11 in Multilocus phylogeny of Gryllus field crickets (Orthoptera: Gryllidae: Gryllinae) utilizing anchored hybrid enrichment
FIG. 11. Time calibrated tree from BEAST.
Data from: Coestimating reticulate phylogenies and gene trees from multilocus sequence data
The multispecies network coalescent (MSNC) is a stochastic process that captures how gene trees grow within the branches of a phylogenetic network. Coupling the MSNC with a stochastic mutational process that operates along the branches of the gene trees gives rise to a generative model of how multiple loci from within and across species evolve in the presence of both incomplete lineage sorting (ILS) and reticulation (e.g., hybridization). We report on a Bayesian method for sampling the parameters of this generative model, including the species phylogeny, gene trees, divergence times, and population sizes, from DNA sequences of multiple independent loci. We demonstrate the utility of our method by analyzing simulated data and reanalyzing an empirical data set. Our results demonstrate the significance of not only co-estimating species phylogenies and gene trees, but also accounting for reticulation and ILS simultaneously. In particular, we show that when gene flow occurs, our method accurately estimates the evolutionary histories, coalescence times, and divergence times. Tree inference methods, on the other hand, underestimate divergence times and overestimate coalescence times when the evolutionary history is reticulate. While the MSNC corresponds to an abstract model of ``intermixture," we study the performance of the model and method on simulated data generated under a gene flow model. We show that the method accurately infers the most recent time at which gene flow occurs. Finally, we demonstrate the application of the new method to a 106-locus yeast data set.
Figure 7 in A new multilocus phylogeny reveals overlooked diversity in African freshwater crabs (Brachyura: Potamoidea): a major revision with new higher taxa and genera
Figure 7. Maps showing the distributional range of (A) Potamonautidae, (B) Liberonautinae.
Fig. 7 in Multilocus Phylogeny Support the Nonbioluminescent Firefly Chespirito as a New Subfamily in the Lampyridae (Coleoptera: Elateroidea)
Fig. 7. Distribution Map of Chespirito species.
Figure 1 from: Fernández-López J, Martín MP, Dueñas M, Telleria MT (2018) Multilocus phylogeny reveals taxonomic misidentification of the Schizopora paradoxa (KUC8140) representative genome. MycoKeys 38: 121-127. https://doi.org/10.3897/mycokeys.38.28497
Figure 1 Maximum likelihood trees for ITS+LSU (left) and rpb2 (right) regions of Xylodon species. In order to assess genealogical concordance, dotted lines link the position of the same specimen in both trees. Grey boxes indicate the position of KUC8140 strain with Xylodonovisporus and the position of X.paradoxus. Numbers over branches are maximum likelihood bootstrap (MLB) values and posterior probabilities (BPP). Voucher numbers and species names are indicated in Table 1.
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OpenNeuro
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