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Fig. 3 in Growing, losing or introducing? Cage aquaculture as a vector for the introduction of non-native fish in Furnas Reservoir, Minas Gerais, Brazil
Fig. 3. Frequency of fish farmers (%) reporting the occurrence of fish escapes during different events of the production chain (n = 19). Accidental: length classification (LC); fish removal (FR); juvenile stocking (JS); cage damage (CD). Deliberate: intentional releases (IR).
Fig. 1 in Growing, losing or introducing? Cage aquaculture as a vector for the introduction of non-native fish in Furnas Reservoir, Minas Gerais, Brazil
Fig. 1. Furnas Reservoir, Minas Gerais, Brazil. The circle indicates the study area (Carmo do Rio Claro town).
Pollen morphometric data and phytolith counts and frequencies of native grasses of the Falkland Islands
<p><strong>Groff et al. phytolith count freq.csv</strong> is a dataset of the raw counts and cumulative frequencies of phytolith shape/texture classifications for nine native grass species from the Falkland Islands. Grass species include <strong>xyz. </strong>and 42 phytoliths were classified by counting at least 300 phytoliths. </p> <p><strong>Groff et al. pollen morphometrics.csv</strong> is a dataset of the raw measurements of pollen grains from eight native grass species from the Falkland Islands. Measurements (in µm) include the polar axis, equatorial axis, annulus diameter, pore diameter (col B), annulus diameter (col C), polar axis (col D), equatorial axis (col E), and the respective transformed data (cols F-I) and the six possible ratios of measurements (cols J-O).</p>
Analytical kinetic model of native tandem promoters in E. coli
<p><span>Closely spaced promoters in tandem formation are abundant in bacteria. We investigated the evolutionary conservation, biological functions, and the RNA and single-cell protein expression of genes regulated by tandem promoters in <i>E. coli</i>. We also studied the sequence (distance between transcription start sites '<i>d<sub>TSS</sub>'</i>,<i> </i>pause sequences, and distances from oriC) and potential influence of the input transcription factors of these promoters. From this, we propose an analytical model of gene expression based on measured expression dynamics, where RNAP-promoter occupancy times and <i>d<sub>TSS</sub> </i>are the key regulators of transcription interference due to TSS occlusion by RNAP at one of the promoters (when <i>d<sub>TSS</sub> </i>≤ 35 bp) and RNAP occupancy of the downstream promoter (when <i>d<sub>TSS</sub> </i>> 35 bp). Occlusion and downstream promoter occupancy are modeled as linear functions of occupancy time, while the influence of <i>d<sub>TSS</sub> i</i>s implemented by a continuous step function, fit to <i>in vivo</i> data on mean single-cell protein numbers of 30 natural genes controlled by tandem promoters. The best-fitting step is at 35 bp, matching the length of DNA occupied by RNAP in the open complex formation. This model accurately predicts the squared coefficient of variation and skewness of the natural single-cell protein numbers as a function of <i>d<sub>TSS</sub></i>. Additional predictions suggest that promoters in tandem formation can cover a wide range of transcription dynamics within realistic intervals of parameter values. By accurately capturing the dynamics of these promoters, this model can be helpful to predict the dynamics of new promoters and contribute to the expansion of the repertoire of expression dynamics available to synthetic genetic constructs.</span></p>
Data from: Chrysolaena obovata, A SPECIES NATIVE OF BRAZILIAN CERRADO: GENETIC DIVERSITY AND STRUCTURE OF NATURAL POPULATIONS AND POTENTIAL FOR INULIN PRODUCTION
<p><em>Chrysolaena obovata</em> (Less.) M. Dematteis, an herbaceous Asteraceae species widely distributed across different Brazilian Cerrado physiognomies, has underground organs, named rhizophores, that accumulate high concentrations of inulin-type fructans. These carbohydrates are recognized as beneficial soluble fibers for human health and are currently used in the food and pharmaceutical industries. Considering that fructans, in addition to their economic potential, provide plants with greater tolerance to drought, heat and cold, it is important to understand whether their metabolism is conserved in natural populations. In this work, we aimed to investigate if the levels of genetic diversity in the populations studied allow the selection of localities with a high genetic base and higher fructan content for future programs of <em>in</em> <em>situ</em> conservation and genetic improvement for inulin production. Therefore, we characterized the diversity, structure, and gene flow of seven natural populations from Brazilian Cerrado, using nine microsatellite loci (SSR). In addition, we compared whether the fructan composition varied between populations of different Cerrado phytophysiognomies. Overall, we found that <em>C. obovata</em> populations exhibited moderate levels of genetic diversity, low genetic differentiation, and high gene flow. This study identified two populations with less genetic diversity and therefore, greater attention should be given to conservation programs including these populations. Fructan metabolism is conserved in all populations, indicating that <em>C. obovata</em> is an important genetic resource with high potential for inulin production.</p> <p><strong>File descriptions</strong></p> <p>Population_code.txt - Contains a matrix that indicates the population_code, Population_name, Brazilian-state, Phytophysiognomy, Collection coordinates and Altitudes (m).</p> <p>Date_ Diaz et al.xlsx – Contains Genotypes crude of the individuals analyzed. Primer used for nine microsatellite loci (Camacho <em>et al</em> 2017). </p> <p>Carbohydrates_Diaz et al - Contains data for carbohydrates in <em>C. obovata</em> plant rhizophores in each population (BRA, UB, SD, SP).</p> <p><strong>Location: Brazilian Cerrado</strong></p>
Data from: The evolution of thermal performance in native and invasive populations of Mimulus guttatus
<p>The rise of globalization has spread organisms beyond their natural range, allowing further opportunity for species to adapt to novel environments and potentially become invaders. Yet, the role of thermal niche evolution in promoting the success of invasive species remains poorly understood. Here, we use thermal performance curves (TPCs) to test hypotheses about thermal adaptation during the invasion process. First, we tested the hypothesis that if species largely conserve their thermal niche in the introduced range, invasive populations may not evolve distinct TPCs relative to native populations, against the alternative hypothesis that thermal niche and therefore TPC evolution has occurred in the invasive range. Second, we tested the hypothesis that clines of TPC parameters are shallower or absent in the invasive range, against the alternative hypothesis that with sufficient time, standing genetic variation, and temperature-mediated selection, invasive populations would re-establish clines found in the native range in response to temperature gradients. To test these hypotheses, we built TPCs for 18 native (United States) and 13 invasive (United Kingdom) populations of the yellow monkeyflower, <i>Mimulus guttatus</i>. We grew clones of multiple genotypes per population at six temperature regimes in growth chambers. We found that invasive populations have not evolved different thermal optima or performance breadths, providing evidence for evolutionary stasis of thermal performance between the native and invasive ranges after over 200 years post-introduction. Thermal optimum increased with mean annual temperature in the native range, indicating some adaptive differentiation among native populations which was absent in the invasive range. Further, native and invasive populations did not exhibit adaptive clines in thermal performance breadth with latitude or temperature seasonality. These findings suggest that thermal performance curves remained unaltered post-invasion, and that invasion may proceed via broad thermal tolerance and establishment in already climatically suitable areas rather than rapid evolution upon introduction.</p>
Native generalist natural enemies and an introduced specialist parasitoid together control an invasive forest insect
<p>Specialized natural enemies have long been considered a major force driving the population dynamics of outbreaking forest insects. While research has traditionally focused on the role of specialist parasitoids, recent studies and reviews reflect an appreciation of complex interactions among many regulatory factors. The sources suggest that specialist parasitoids and generalist predators can each inflict strong top‐down effects and that specialists and generalists can interact to regulate insect herbivore populations. Here we use the model study organism winter moth (<i>Operophtera brumata</i>) in its invasive range in the northeast United States to investigate interactions between the introduced, host-specific tachinid parasitoid <i>Cyzenis albicans</i> and native, generalist pupal predators. Prior research in Canada showed that predation of winter moth pupae increased after <i>C. albicans </i>establishment. To explain this phenomenon, the following hypotheses have been suggested: (1) parasitoids suppress the winter moth population to a density that can be maintained by generalist predators, (2) unparasitized pupae are preferred by predators and thus experience higher mortality rates, or (3) <i>C. albicans </i>sustain higher predator populations throughout the year more effectively than winter moth alone. We tested these hypotheses by deploying winter moth pupae over six years spanning 2005 to 2017 and by modeling pupal predation rates as a function of winter moth density and <i>C. albicans </i>establishment. We also compared predation rates of unparasitized and parasitized pupae and considered additional mortality by a native pupal parasitoid. We found support for the first hypothesis; we detected both temporal and spatial density dependence, but only in the latter years of the study when winter moth densities were lower. We found no evidence for the latter two hypotheses. Our findings suggest that pupal predators have a regulatory effect on winter moth populations only after populations have been reduced, presumably by the introduction of the host-specific parasitoid <i>C. albicans</i>.</p>
Figs 1–5 in A New Finding Of The Non-Native Copepod Sinodiaptomus Sarsi (Copepoda, Calanoida, Diaptomidae) In Ukraine
Figs 1–5. Sinodiaptomus sarsi: 1 — habitus of female (A) and male (B); 2 — last prosomal somite and urosome of female; 3 — leg 5, female; 4 — right antennule, male; 5 — leg 5, male.
Fig. 1 in Uzbekistan - The Alleged Native Range Of The Invasive Ant Lasius Neglectus (Hymenoptera, Formicidae): Geographical, Ecological And Biological Evidences
Fig. 1. Collection sites of Lasius neglectus in Uzbekistan (1–20) and Tajikistan (21). Note: numbering of collection sites as in table 1; the bold line encircles the assumed native range of L. neglectus.
Data from: Restoration of native saltmarshes can reverse arthropod assemblages and trophic interactions changed by a plant invasion
<p><span>Plant invasions profoundly impact both</span> <span>natural and managed ecosystems, and removal of the invasive plants addresses only part of the problem of restoring impacted areas. The rehabili</span><span>tation of diverse communities and their ecosystem functions following removal of invasive plants is an important goal of ecological restoration. Arthropod assemblages and trophic interactions are important indicators of the success of restoration, but have largely been overlooked in saltmarshes. We determined how arthropod assemblages and trophic interactions changed with the invasion of the exotic plant <em>Spartina</em> <em>alterniflora</em> and with the restoration of the native plant <em>Phragmites australis</em> following <em>Spartina </em>removal in a Chinese saltmarsh. We investigated multiple biotic and abiotic variables to gain insight into the factors underlying the changes in arthropod assemblages and trophic structure. We found that </span><span>although <em>Spartina</em> invasion had changed arthropod diversity, community structure, feeding-guild composition, and the diets of arthropod natural enemies in the saltmarsh, these changes could be reversed by the restoration of native <em><span>Phragmites</span></em> vegetation following removal of the invader. </span><span>The v</span><span>ariation in arthropod assemblages and </span><span>trophic structure </span><span>were </span><span>critically </span><span>associated with four biotic and abiotic variables (aboveground biomass, plant density, leaf N, and soil salinity)<span>. </span></span><span>Our findings demonstrate the positive effects of controlling invasive plants on biodiversity and nutrient cycling, and </span><span>provide a foundation </span><span>for assessing the efficacy of ecological restoration projects in saltmarshes.</span></p>
Data from: Pop‐off data storage tags reveal niche partitioning between native and non‐native predators in a novel ecosystem
1. Niche partitioning might be predicted to be particularly dynamic in 'novel ecosystems' characterized by human-altered environmental conditions and biological invasions. Restoration efforts for native species in such systems can be informed by detailed characterization of niche partitioning. 2. In Lake Ontario, fishery management agencies have been engaged in a long-term struggle to restore native top predators including lake trout (Salvelinus namaycush). Meanwhile, management agencies continue to stock non-native species like Chinook salmon (Oncorhynchus tshawytscha) into the lake to support a recreational fishery and to help control the abundance of a non-native forage fish, the alewife (Alosa pseudoharengus). 3. We used pop-off data storage tags to study fine scale (9.1M lines of data from 22 animals) behaviour and habitat use by lake trout (native) and Chinook salmon (non-native) in Lake Ontario in terms of depth and temperature, recorded at ≤70 s intervals for periods of up to 12 months. 4. Chinook salmon occupied warmer and shallower waters during summer than did lake trout, and their niche breadth was wider. They achieved greater niche breadth in part because they were much more active vertically, cumulatively traveling 103±1 m hour-1 during summer (model-estimated median), whereas most lake trout were relatively inactive vertically (7±1 m hour-1). In each of our analyses, there was more inter-individual variation among lake trout than among Chinook salmon, driven by some lake trout that spent considerable time making forays into warmer, shallower waters. 5. Synthesis and applications. Our results illustrate the different foraging tactics used by two species in the Great Lakes and reflect their distinct life histories. Vertical and thermal niche partitioning between Chinook salmon and lake trout helps to explain how these species can co-exist in a multi-species fishery even while having substantial overlap in diet. The diversity of behaviours exhibited here by native lake trout have likely helped them persist during dramatic changes to the forage base in recent decades; that flexibility could help underlie their long-term prospects for restoration during future changes to the ecosystem.
Moths and butterflies on alien shores – global biogeography of non-native Lepidoptera
<p class="MsoNormal"><span>Lepidoptera is a highly diverse, predominantly herbivorous insect order, with species transported to outside their native range largely facilitated by the global trade of plants and plant-based goods. Analogous to island disharmony, we examine invasion disharmony, where species filtering during invasions increases systematic compositional differences between native and non-native species assemblages, and test whether some families are more successful at establishing in non-native regions than others. We compared numbers of non-native, unintentionally introduced Lepidoptera species with the land area of 11 regions worldwide (Hawaii, North America, Galapagos, Europe, South Africa, South Korea, Japan, Nansei Islands, Ogasawara Islands, Australia, New Zealand). Differences among native and non-native assemblages in the distribution of species among families were investigated using ordination analysis. We tested whether invasion disharmony is explained by propagule pressure (proxied by species richness in border interceptions) and if families were associated with specific trade commodities. In total, 741 non-native Lepidoptera species, accounting for 0.47% of the global diversity of lepidopterans, are established in at least one of the 11 regions. Crambidae, Pyralidae, Tineidae and Gracillariidae were particularly successful invaders, whereas the two most species-rich families, Erebidae and Geometridae, were under-represented among non-native Lepidoptera. Much of the variation in species numbers in the native, and less so in the non-native assemblages could be attributed to land area. Although native assemblages were similar among nearby regions, non-native assemblages were not, suggesting geography had little effect on invasion disharmony. Comparison of established with intercepted species revealed that macromoth families were generally under-represented in establishments, whereas several micromoth families were under-represented in interceptions. This discrepancy may relate to greater detectability of larger species or high propagule pressure via associations with specific invasion pathways. Invasion disharmony in Lepidoptera appears to be driven by processes unrelated to the success of native assemblages. While native assemblages developed through long-term evolutionary radiation, the composition of non-native assemblages is driven by differential invasion pathways and traits affecting the establishment of founder populations that vary among families.</span></p>
Introduced populations of ragweed show as much evolutionary potential as native populations
<p>Invasive species are a global economic and ecological problem. They also offer an opportunity to understand evolutionary processes in a colonizing context. The impacts of evolutionary factors, such as genetic variation, on the invasion process are increasingly appreciated, but there remain gaps in the empirical literature. The adaptive potential of populations can be quantified using genetic variance–covariance matrices <strong>(G)</strong>, which encapsulate the heritable genetic variance in a population. Here, we use a multivariate Bayesian approach to assess the adaptive potential of invasive populations of ragweed (<em>Ambrosia artemisiifolia</em>), a serious allergen and agricultural weed. We compared several aspects of genetic architecture and the structure of <strong>G</strong> matrices between three native and three introduced populations, based on phenotypic data collected in a field common garden experiment. We found moderate differences in the quantitative genetic architecture among populations, but we did not find that introduced populations suffer from a limited adaptive potential or increased genetic constraint compared with native populations. Ragweed has an annual life history, is an obligate outcrosser, and produces very large numbers of seeds and pollen grains. These characteristics, combined with the significant additive genetic variance documented here, suggest ragweed will be able to respond quickly to selection pressures in both its native and introduced ranges.</p>
Data from: Non-native grazers affect physiological and demographic responses of Greater Sage-grouse
<p>1. Non-native ungulate grazing has negatively impacted native species across the globe, leading to massive loss of biodiversity and ecosystem services. Despite their pervasiveness, interactions between non-native grazers and native species are not fully understood. We often observe declines in demography or survival of these native species, but lack understanding about the mechanisms underlying these declines. Physiological stress represents one mechanism of (mal)adaptation but data are sparse.</p> <p>2. We investigated glucocorticoid levels in a native avian herbivore exposed to different intensities of non-native grazing in the cold desert Great Basin ecosystem, USA. We measured corticosterone, a glucocorticoid in feathers for a large sample (n = 280) of female Greater Sage-grouse (Centrocercus urophasianus) from three study areas in Northern Nevada and Southern Oregon with different grazing regimes of livestock and feral horses.</p> <p>3. We found greater feral horse density was associated with higher corticosterone levels, and this effect was exacerbated by drought conditions. Livestock grazing produced similar results; however there was more model uncertainty about the livestock effect. Subsequent nesting success was lower with increased feather corticosterone, but corticosterone levels were not predictive of other vital rates.</p> <p>4. Our results indicate a physiological response by sage-grouse to grazing pressure from non-native grazers. We found substantial among-individual variation in the strength of the response. These adverse effects were intensified during unfavorable weather events, highlighting the need to reevaluate management strategies in the face of climate change.</p>
Data from: Historic deforestation and non-native plant invasions determine vegetation trajectories across an oceanic archipelago
<p>This archive contains data produced in a study of the vegetation trajectories of Ogasawara Islands in 77 years related to following article:</p> <p>Ohashi, H., Kato, H., Murao, M., Kato, H., Kawakami, K., Kurokawa, H., Oguro, M., Kimura, F., Niiyama, K., Matsui, T., and Shibata, M. (2024) Historic deforestation and non-native plant invasions determine vegetation trajectories across an oceanic archipelago. <em>Applied Vegetation Science</em>, 27 (1), e12767. <a href="https://doi.org/10.1111/avsc.12767">https://doi.org/10.1111/avsc.12767</a></p> <p> </p> <p><strong>Archive contents</strong><br>The archive contents are organized into five parts, each stored as a .zip compressed file.</p> <p><strong>X1_tif_original_vegmap_scan_georeference</strong></p> <p>Scanned and georeferenced original vegetation maps in GeoTiff format, which was drawn in 1935, scanned at 300 dpi. Coordinate reference system was set at WGS84 (ESPG: 4326).</p> <p>This directory includes:</p> <p><em>kitanoshima_isl_WGS84.tif<br>mukojima_isl_WGS84.tif<br>yomejima_isl_WGS84.tif<br>ototojima_isl_WGS84.tif<br>anijima_isl_WGS84.tif<br>nishijima_isl_WGS84.tif<br>chichijima_isl_WGS84.tif<br>hahajima_isl_WGS84.tif<br>mukohjima_isl_WGS84.tif<br>kitaiwoto_isl_WGS84.tif<br>iwoto_isl_WGS84.tif</em></p> <p> </p> <p><strong>X2_shp_vegmap</strong></p> <p>Shapefile of the geospatial polygon data of vegetation map of Ogasawara Islands surveyed in 1935, and stored as a .zip compressed file. Coordinate reference system was set at WGS84 (ESPG: 4326).</p> <p>This directory includes:</p> <p><em>VegetationMap_OgasaawraIsl_1935_en_UTF8_v0.dbf<br>VegetationMap_OgasaawraIsl_1935_en_UTF8_v0.prj<br>VegetationMap_OgasaawraIsl_1935_en_UTF8_v0.shp<br>VegetationMap_OgasaawraIsl_1935_en_UTF8_v0.shx<br>attribute_ForSect_code_en.csv<br>attribute_Veg_name_en.csv<br>metadata_vegmap_shp_ogasawara1935_en.csv</em></p> <p>Following files includes Japanese character (which may corrupt in non-Japanese environment):</p> <p><em>attribute_ForSect_jp.csv<br>attribute_Veg_name_jp.csv<br>metadata_vegmap_shp_ogasawara1935_jp.csv</em></p> <p> </p> <p><strong>X3_tif_vegmap_converted_from_shp</strong></p> <p>Rasterized data of polygon data of vegetation map for analysis. Coordinate reference system was set at JGD2000 / Japan Plane Rectangular CS XIV (EPSG: 2456)</p> <p>This directory includes:</p> <p><em>vegmap_1935.zip (compressed “vegmap_1935.tif (0.7GB)”)<br>vegnap_1979.zip (compressed “vegmap_1979.tif (1.5GB)”)<br>vegmap_2011.zip (compressed “vegmap_2011.tif (1.5GB)”)<br>islcode_raster.zip (compressed “vegmap_2011.tif (1.5GB)”)<br>attribute_integratedveg_ecoltype.csv<br>attribute_vegid_1935.csv<br>attribute_vegid_1979.csv<br>attribute_vegid_2011.csv</em></p> <p> </p> <p><strong>X4_scanned_image_vegdata</strong></p> <p>Scanned images of original vegetation data in 1935.</p> <p>The directory includes:<br><em>vegetation_survey_sheet_1.pdf<br>vegetation_survey_sheet_2.pdf</em><br><em>vegetation_survey_sheet_3.pdf</em></p> <p> </p> <p><strong>X5_digitized_vegdata</strong></p> <p>Digitized vegetation data.</p> <p>The directory includes:<br><em>plot_species_abundance_matrix_v0.csv<br>plotinfo_v0.csv<br>attribute_Species_en_v0.csv</em></p> <p>Following file includes Japanese character (which may corrupt in non-Japanese environment)<br><em>attribute_Species_jp_v0.csv</em><br> </p> <p><strong>X6_code_for_analysis</strong></p> <p>Tentative.</p> <p> </p> <p>このアーカイブには、小笠原諸島の77年間の植生の変遷(1935年、1979年、2012年)に関するデータが含まれています。</p> <p> </p>
Data from: Grazing by non-native ungulates negatively impacts vegetation important to a native species of concern
<p>Non-native grazers compete with native species across the globe. In the northwestern Great Basin of the western United States competition among livestock, feral horses, and Greater Sage-grouse has been the subject of numerous legal actions and management policies, yet spatially explicit temporal data documenting the details of this competition are lacking. We present a novel approach to studying the composition of the herbaceous understory across three study areas within the Great Basin with different historic and contemporary grazing regimes. We surveyed the landscape using distance sampling for livestock and horse feces as an index of use. In addition, we surveyed the herbaceous understory of random sites as well as sites chosen by female Greater Sage-grouse to nest and brood their chicks. We used a novel Bayesian hierarchical modeling framework to link vegetation metrics with the spatial-temporal distribution of horses and livestock while accounting for observation error. When livestock and feral horses were not present, we found that Greater Sage-grouse chose sites with higher percentages of perennial grasses and forbs to build their nests and brood their chicks compared to what was available to them. As livestock increased, we found evidence for decreases in the percentage of perennial grasses, forbs, cheatgrass (<em>Bromus tectorum</em>), and increases in the amount of bare ground. These effects were consistent at available sites and brood sites, however, we found less evidence for an impact of livestock at nest sites. As feral horses increased, we observed similar results at available sites, but at sites chosen by females to nest and brood their chicks, we observed increases in the amount of invasive cheatgrass as feral horses increased, which could reflect attempts by Greater Sage-grouse to compensate for reductions in protective cover. We present a noninvasive approach to assess space use that can be applied to other species. More importantly, we document that grazing by non-native ungulates impacts components of the plant community important to Greater Sage-grouse reproduction. We provide spatial-temporal maps of livestock and feral horse use to aid managers attempting to balance the needs of livestock producers, feral horses, Greater Sage-grouse, and ecosystem function.</p>
Figs 2–4 in Occurrence And Abundance Of Invasive And Native Arion Slugs In Three Types Of Habitats In Urban Area Of Wrocław (Sw Poland)
Figs 2–4. Sampled habitat types: 2 = natural habitat in forest Las Pilczycki (locality no 2); 3 = semi-natural habitat with watercourse, the Dolna Oława in Park Wschodni (locality no
Fig. 1 in Occurrence And Abundance Of Invasive And Native Arion Slugs In Three Types Of Habitats In Urban Area Of Wrocław (Sw Poland)
Fig. 1. Location of sampling sites in Wrocław (see Table 1) and map of administrative division of Poland. Symbols indicate the type of habitat. Colours indicate species and hybrids
Fig. 4 in The threat of free-ranging domestic dog to native wildlife: implication for conservation in Southeast Asia
Fig. 4. The spatial distribution of perceived risk from domestic dog (Canis familiaris) across mainland Southeast Asia. Excluded human settlements and water bodies have been marked in white.
Fig. 3 in The threat of free-ranging domestic dog to native wildlife: implication for conservation in Southeast Asia
Fig. 3. Percentage perceived risk in Avian and Mammalian orders. Height of peaks represent number of species scaled to 2, see Supplementary Materials 4 and 5. Orders with two or less species, including Otidiformes, Dermoptera, Perissodactyla, Pholidota, and Proboscidea, were removed for visualisation.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.