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125 results for “phylogenetic divergence”
Figure 1 from: Del Latte L, Bortolin F, Rota-Stabelli O, Fusco G, Bonato L (2015) Molecular-based estimate of species number, phylogenetic relationships and divergence times for the genus Stenotaenia (Chilopoda, Geophilomorpha) in the Italian region. In: Tuf IH, Tajovský K (Eds) Proceedings of the 16th International Congress of Myriapodology, Olomouc, Czech Republic. ZooKeys 510: 31-47. https://doi.org/10.3897/zookeys.510.8808
Figure 1 - Sampling localities of Stenotaenia in the Italian region. Greek letters refer to the species tentatively recognized after the analyses (see text).
Figure 4 in The fifth family of the true crickets (Insecta: Orthoptera: Ensifera: Grylloidea), Oecanthidae defin. nov.: phylogenetic relationships and divergence times
Figure 4. Distribution maps of Oecanthidae subfamilies and supertribes.
Figure 8 in The fifth family of the true crickets (Insecta: Orthoptera: Ensifera: Grylloidea), Oecanthidae defin. nov.: phylogenetic relationships and divergence times
Figure 8. Diatrypa (Diatrypa) tuberculata. A, female; B, male.
Supplementary material 1 from: Zhao H, Vlasák J, Yuan Y (2023) Outline, phylogenetic and divergence times analyses of the genus Haploporus (Polyporales, Basidiomycota): two new species are proposed. MycoKeys 98: 233-252. https://doi.org/10.3897/mycokeys.98.105684
The supplementary materilas in this study
Data from: Hemocyanin gene family evolution in spiders (Araneae), with implications for phylogenetic relationships and divergence times in the infraorder Mygalomorphae
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Data from: Phylogenetic informativeness reconciles ray-finned fish molecular divergence times
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Data from: The emergence of the lobsters: phylogenetic relationships, morphological evolution and divergence time comparisons of an ancient group (Decapoda: Achelata, Astacidea, Glypheidea, Polychelida)
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Data from: Morphology, fossils, divergence timing, and the phylogenetic relationships of Gavialis
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Data from: Can long-range PCR be used to amplify genetically divergent mitochondrial genomes for comparative phylogenetics? A case study within spiders (Arthropoda: Araneae).
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Data from: The legacy of Eastern Mediterranean mountain uplifts – rapid disparity of phylogenetic niche conservatism and divergence in mountain vipers
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Data from: Phylogenetic analyses reveal molecular signatures associated with functional divergence among Subtilisin like Serine Proteases are linked to lifestyle transitions in Hypocreales
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Phylogenetic signatures of ecological divergence and leapfrog adaptive radiation in Espeletia
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Data from: Types, levels, and patterns of low-copy DNA sequence divergence, and phylogenetic implications, for Gossypium genome types
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Data from: Disentangling the fundamental branching patterns of phylogenetic divergence to refine eco-phylogenetic analyses
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A phylogenetically based transcriptome age index mirrors ontogenetic divergence patterns
GEO Series GSE24616. Danio rerio. 147 samples. Type: Expression profiling by array.
Data from: Genome-wide survey of nuclear protein-coding markers for beetle phylogenetics and their application in resolving both deep and shallow-level divergences
Beetles (Coleoptera) are the most diverse and species-rich insect group, representing an impressive explosive radiation in the evolutionary history of insects, and their evolutionary relationships are often difficult to resolve. The amount of "traditional markers" (e.g., mitochondrial genes and nuclear rDNAs) for beetle phylogenetics is small and these markers often lack sufficient signals in resolving relationships for such a rapidly radiating lineage. Here, based on the available genome data of beetles and other related insect species, we performed a genome-wide survey to search nuclear protein-coding (NPC) genes suitable for research on beetle phylogenetics. As a result, we identified 1470 candidate loci, which provided a valuable data resource to the beetle evolutionary research community for NPC marker development. We randomly chose 180 candidate loci from the database to design primers and successfully developed 95 NPC markers which can be PCR amplified from standard genomic DNA extracts. These new nuclear markers are universally applicable across Coleoptera, with an average amplification success rate of 90%. To test the phylogenetic utility, we used them to investigate the backbone phylogeny of Coleoptera (18 families sampled) and the family Coccinellidae (39 species sampled). Both phylogenies are well resolved (average bootstrap support > 95%), showing that our markers can be used to address phylogenetic questions of various evolutionary depth (from species level to family level). In general, the newly developed nuclear markers are much easier to use and more phylogenetically informative than the "traditional markers", and show great potential to expedite resolution of many parts in the Beetle Tree of Life.
Figure 2 from: Del Latte L, Bortolin F, Rota-Stabelli O, Fusco G, Bonato L (2015) Molecular-based estimate of species number, phylogenetic relationships and divergence times for the genus Stenotaenia (Chilopoda, Geophilomorpha) in the Italian region. In: Tuf IH, Tajovský K (Eds) Proceedings of the 16th International Congress of Myriapodology, Olomouc, Czech Republic. ZooKeys 510: 31-47. https://doi.org/10.3897/zookeys.510.8808
Figure 2 - Frequency distribution of COI pairwise distances. A K2P distances. B p-distances.
Data from: Phylogenetic divergences of the true bugs (Insecta: Hemiptera: Heteroptera), with emphasis on the aquatic lineages: the last piece of the aquatic insect jigsaw originated in the Late Permian/Early Triassic
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Data from: Genome-wide survey of nuclear protein-coding markers for beetle phylogenetics and their application in resolving both deep and shallow-level divergences
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Fig. 2 in Phylogenetic relationships and divergence times of the poorly known genus Spalerosophis (Serpentes: Colubridae)
Fig. 2 Divergence times of Spalerosophis species based on three mitochondrial genes. Values on the left of nodes denote Bayesian posterior probabilities in percentage, and values on the right of nodes
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.