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794 results for “publishing”
Code and data for publication "Assessing carbon cycle projections from complex and simple models under SSP scenarios" published in "Climatic Change"
<p>Data and scripts for the article "Assessing carbon cycle projections from complex and simple models under SSP scenarios" by I. Melnikova, P. Ciais, O. Boucher and K. Tanaka was accepted for publication in Climatic Change (https://doi.org/10.1007/s10584-023-03639-5)</p><p> </p><p>We use bash, CDO, and python.</p><p>SSP2.xlsx contains preprocessed annual estimates of climate and carbon cycle variables from ESMs and SCMs used in the paper.</p><p>Two bash scripts contain preprocessing cdo commands for ESM output.s SCMs were preprocessed directly in python.</p><p>Jupyter notebook (python) contains preprocessing of data and plotting of all figures of the manuscript. The folder "additional" contains some more Excel files needed to run Jupyter-Notebook. Please adapt the folder names.</p><p>If you have any questions, please contact the corresponding author Irina MELNIKOVA at melnikova . irina@nies.go.jp</p><p> </p>
Academic publishing requires linguistically inclusive policies
<p>Curated databases of the project "Academic publishing requires linguistically inclusive policies." </p> <p>"CuratedDatabase_Guidelines.txt" and "CuratedDatabase_Survey.txt" contain information about the linguistic policies of journals in biological sciences. Their information was collected from author guidelines and surveys to editors-in-chief, respectively. Additional information from the journal was extracted from the 2020 Journal Citation Reports (JCR).</p> <p><strong>Description, data type, and scoring options of the databases' fields (columns)</strong></p> <p>"CuratedDatabase_Guidelines.txt"'</p> <ul> <li>Collaborator: Anonymised identifier of collaborator who collected the information. Categorical.</li> <li>SurveyAnswer: Whether the editor-in-chief of the editor accepted the request to complete the survey. Categorical. YES, NO.</li> <li>Journal_JCR: Anonymised identifier of the journal name. Text.</li> <li>ImpactFactor_JCR: Impact Factor of the journal as per JCR. Numeric.</li> <li>OA_JCR: Percentage of Golden Open Access articles as per JCR. Numeric.</li> <li>Discipline_JCR: Discipline of the journal as per JCR. Categorical.</li> <li>CountryPublication_JCR: Country or region of publication of the journal as per JCR. Categorical.</li> <li>LanguageCountry: Language of the country where the journal is published. Categorical. English, Non-English.</li> <li>IssuesPerYear_JCR: Regularity as number of issues published by year as per JCR. Numeric.</li> <li>PublisherType: Business model of the journal's publisher. Categorical. Profit, Non-profit.</li> <li>SocietyJournal: Whether the journal is published on behalf of a scientific society. Categorical. 0 for NO, 1 for YES.</li> <li>Language: Languages in which the journal publish content. Text.</li> <li>RegionalGlobal: Whether the journal explicitly target to a global or regional audience. Categorical. Global, Regional.</li> <li>LinguisticDiversityEditors: Proportion of editors that are based in countries where English is not predominantly spoken. Numeric.</li> <li>EnglishEditingService: Type of English editing services that the journal provides to authors. Categorical. 0 for NONE, 1 for COMMERCIAL, 2 for FREE.</li> <li>AdditionalSupport: Additional support that journals offer to authors. Text.</li> <li>AdditionalLanguageGuidelines: Whether the author guidelines are available in languages other than English. Categorical. 0 for ONLY ENGLISH, 1 for ADDITIONAL LANGUAGES IN SOME SECTIONS, 2 for ADDITIONAL LANGUAGES.</li> <li>LanguageGuidelines: If apply, languages in which the author guidelines are available.</li> <li>LinguisticInclusivityStatement: Whether the journal clearly states that a paper will not be rejected solely by the perceived quality of English. Categorical. NO, YES.</li> <li>AdditionalLanguageManuscripts: Whether the journal publish entire manuscripts in languages other than English. Categorical. 0 for NO, 1 for YES.</li> <li>AdditionalLanguageAbstract: Whether the journal publish abstracts in languages other than English. Categorical. 0 for NO, 1 for YES.</li> <li>WhereSecondAbstract: If apply, the format in which the journal publish abstracts in languages other than English. Categorical.</li> <li>ProofReadingAL: If apply, whether the non-English content is proofread. Categorical. </li> <li>ReferencesAdditionalLanguage: Whether the journal publish references in languages other than English. Categorical. 0 for PROHIBITED/NO-MENTION, 1 for ALLOWED, 2 for ENCOURAGED.</li> <li>AutomaticTranslationTools: Whether the journal's website implement machine translation tools to read the manuscripts in languages other than English. 0 for NO, 1 for YES.</li> </ul> <p>"CuratedDatabase_Survey.txt"</p> <ul> <li>Journal_JCR: Anonymised identifier of the journal name. Text.</li> <li>ImpactFactor_JCR: Impact Factor of the journal as per JCR. Numeric.</li> <li>OA_JCR: Percentage of Golden Open Access articles as per JCR. Numeric.</li> <li>SocietyJournal: Whether the journal is published on behalf of a scientific society. Categorical. 0 for NO, 1 for YES.</li> <li>LinguisticDiversityEditors: Proportion of editors that are based in countries where English is not predominantly spoken. Numeric.</li> <li>AdditionalLanguageManuscripts: Whether the journal publish entire manuscripts in languages other than English. Categorical. 0 for NO, 1 for YES.</li> <li>EnglishEditingService: Type of English editing services that the journal provides to authors. Categorical. 0 for NONE, 1 for COMMERCIAL, 2 for FREE.</li> <li>ReferencesAdditionalLanguage: Whether the journal publish references in languages other than English. Categorical. 0 for PROHIBITED/NO-MENTION, 1 for ALLOWED, 2 for ENCOURAGED.</li> <li>InstructionsReviewers: Whether reviewers are instructed to avoid recommending the rejection manuscripts solely based on the perceived standard of English. 0 for NO, 1 for YES.</li> <li>InstructionsEditors: Whether editors are instructed to avoid rejecting manuscripts solely based on the perceived standard of English. 0 for NO, 1 for YES.</li> <li>YearStartLinguisticPolicies: For journals that publish content in languages other than English, the year in which those policies were implemented. Numeric. Values "1920" correspond to "Before 1920."</li> <li>AdditionalLanguageAbstract: Whether the journal publish abstracts in languages other than English. Categorical. 0 for NO, 1 for YES.</li> </ul>
FIGURE 3 Bibliographic works containing vascular plant nomenclatural events published between 2019 and 2021 in Global access to nomenclatural botanical resources: Evaluating open access availability
FIGURE 3 Bibliographic works containing vascular plant nomenclatural events published between 2019 and 2021 and their use of open access (OA), coverage of top 80% of the International Plant Names Index (IPNI) dataset (journal abbreviations follow IPNI, asterisk indicates that the title is included in the Directory of Open Access Journals).
Fig. 2. A-B in Orbitolinids And Other Larger Benthic Foraminifera From The Aptian-Albian Of Tibet: Critical Discussion Of Some Recently Published Data
Fig. 2. A-B, Praeorbitolina cormyi Schroeder fide BouDagher-Fadel et al. (2017, fig. 9.6 and 9.5), Lower Cretaceous of Tibet. C-D, Paleodictoyconus actinostoma Arnaud-Vanneau & Schroeder, early Aptian of Central Iran. E, Praeorbitolina cf. wienandsi Schroeder fide BouDagher-Fadel et al. (2107, fig. 12.1). F-G, juvenile specimens of Paleodictyoconus sp., (?P. actinostoma Arnaud-Vanneau & Schroeder), early Aptian of Central Iran. H, Pseudochoffatella cuvillieri Deloffre fide Bou-Dagher-Fadel et al. (2017, fig. 12.7). I-K, unknown lituolid, early Aptian Taft Formation of Central Iran. Figures without scale.
Fig. 1 in The Original Published Description Of An Embryonic Apparatus From The Orbitolinidae (Foraminifera) (Lower Cretaceous Of Borneo) With A Brief Commentary On The Age Of Orbitolinid Occurrences In Borneo
Fig. 1 Palorbitolina lenticularis (Blumenbach) from the Lower Cretaceous of Borneo (a-b) and south-eastern France (c-e). a-b transverse section of megalospheric embryo (from Martin, 1890, pl. XXV, fig. 18; b modified: light red = protoconch; light orange = periembryonic ring or zone). c transverse section of the megalospheric embryo (from Schroeder, 1963, pl. 24, fig. 4). d view of cone base, e view of cone surface, f Side view (from Blumenbach, 1805, pl. 80, figs. 5-6, 2, without scale).
Fig. 1. A in Orbitolinids And Other Larger Benthic Foraminifera From The Aptian-Albian Of Tibet: Critical Discussion Of Some Recently Published Data
Fig. 1. A, Mesorbitolina parva (Douglass) fide BouDagher-Fadel et al. (2017, excerpt of fig. 8), Lower Cretaceous of Tibet. B-E, Praeorbitolina cormyi Schroeder, axial sections perpendicular to the median plane (B-C: excerpt of Bosselini et al., 1999, fig. 5a and 5g, early Aptian of Ethiopia; D-E: early Aptian of Iran). Figures without scale.
Dataset for the paper "Mental Health and Burnout during Medical School: Longitudinal Evolution and Covariates" published in PLOS ONE (2024)
<p><strong>Full reference of the paper:</strong></p> <p>Carrard V, Berney S, Bourquin C, Ranjbar S, Castelao E, Schlegel K, et al. (2024) Mental health and burnout during medical school: Longitudinal evolution and covariates. PLoS ONE 19(4): e0295100. <a href="https://doi.org/10.1371/journal.pone.0295100">https://doi.org/10.1371/journal.pone.0295100</a></p>
nanoCT data for the samples published in the article doi 10.1002/jemt.24746
<p>nanoCT data for the samples published in the article "Dealing with Missing Angular Sections in NanoCT Reconstructions of Low Contrast Polymeric Samples Employing a Mechanical In Situ Loading Stage" - Rafaela Debastiani, Chantal Miriam Kurpiers, Enrico Domenico Lemma, Ben Breitung, Martin Bastmeyer, Ruth Schwaiger, Peter Gumbsch</p> <p><a href="https://doi.org/10.1002/jemt.24746">https://doi.org/10.1002/jemt.24746</a></p> <p>Samples:<br>Sample A_180°_phase<br>Sample A_140°_pos0°_phase<br>Sample A_140°_pos0°_absorption<br>Sample A_140°_pos45°_phase<br>Sample A_140°_pos45°_absorption<br>Sample A_140°_pos90°_phase<br>Sample A_140°_pos90°_absorption</p> <p>Sample B_140°_pos0°_phase<br>Sample B_140°_pos90°_absorption<br>Sample B_140°_pos90°_phase<br>Sample B_coated_140°_absorption<br>Sample B_coated_140°_phase</p> <p> </p> <p>Phase = Zernike phase contrast</p> <p>Absorption = absorption contrast</p>
Data published in manuscript "Effects of reversal of water flow in an Arctic floodplain river on fluvial emissions of CO2 and CH4" by Castro-Morales et al.
<p>This data is published in the manuscript<strong>:</strong></p> <p>Castro-Morales, K., Canning, A., Körtzinger, A., Göckede, M., Küsel, K., et al. (2022). Effects of reversal of water flow in an Arctic floodplain river on fluvial emissions of CO<sub>2</sub> and CH<sub>4</sub>. <em>Journal of Geophysical Research: Biogeosciences</em>, 127, e2021JG006485. <a href="https://doi.org/10.1029/2021JG006485">https://doi.org/10.1029/2021JG006485</a>.</p> <p>The data contains the water properties and gases data measured at a site in Ambolikha River, meteorological data measured at an eddy covariance tower located in the neighbor floodplain, and data from the analysis of dissolved organic matter in river water samples. The data was collected between 26 June, 2019 and 02 August, 2019.<strong> </strong></p> <p>This folder contains four data files and the file "README_Data_access_Castro-Morales_etal_Ambolikha_River.txt" should be read before accessing the data. The authors recommend downloading Version 2.0 because it is the most up to date data.</p> <p>For questions contact the main and corresponding author Dr. Karel Castro-Morales at: karel.castro.morales@uni-jena.de</p>
Landscape composition and life-history traits influence bat movement and space use: analysis of 30 years of published telemetry data
<p>Using temperate bats, a group of particular conservation concern, we investigated how morphological traits, habitat specialization and environmental variables affect home range sizes and daily foraging movements, using a compilation of 30 years of published bat telemetry data in Northern America and Europe for the period 1988 – 2016.</p> <p>We compiled data on home range size and mean daily distance between roosts and foraging areas at both colony and individual levels from 166 studies of 3,129 radiotracked individuals of 49 bat species. We calculated multi-scale habitat composition and configuration in the surrounding landscapes of all studied roosts. Using mixed models, we examined the effects of habitat availability and spatial arrangement on bat movements, while accounting for body mass, aspect ratio, wing loading and habitat specialization.</p> <p>We found a significant effect of landscape composition on home range size and mean daily distance at both colony and individual levels. On average, home ranges were up to 42% smaller in the most habitat-diversified landscapes while mean daily distances were up to 30% shorter in the most forested landscapes. Bat home range size significantly increased with body mass, wing aspect ratio and wing loading, and decreased with habitat specialization.</p>
Code for data and figures published in "Solar energy as an early just transition opportunity for coal-bearing states in India"
<p>The following code and data were used to generate the figures in the article "Solar energy as an early just transition opportunity for coal-bearing states in India". The article was published in Environmental Research Letters (<a href="https://iopscience.iop.org/article/10.1088/1748-9326/ac5194">https://iopscience.iop.org/article/10.1088/1748-9326/ac5194</a>)</p> <p>The code is written in R. Before running the Rmd file, create a folder called "Data" and store all the files there, except the Rmd file.</p>
Reliability of citations of medRxiv preprints in articles published on COVID-19 in the world leading medical journals
<p>Articles published on COVID in 2020 in the BMJ, The Lancet, the JAMA and the NEJM were manually screened to identify all articles citing at least one preprint from medRxiv. We searched PubMed, Google and Google Scholar to assess if the preprint had been published in a peer-reviewed journal, and when. Published articles were screened to assess if the title, data or conclusions were identical to the preprint version.</p>
Data to "Evidence for the evolution of eusociality in stem ants and a systematic revision of †Gerontoformica (Hymenoptera: Formicidae)" published in Zoological Journal of the Linnean Society
<p>These are the µCT Datasets used in the study "Evidence for the evolution of eusociality in stem ants and a systematic revision of †<em>Gerontoformica</em> (Hymenoptera: Formicidae)" published in the Zoological Journal of the linnean society.<br> In the study, an amber piece containing 4 specimens of the stem ant genus †<em>Gerontoformica </em>was investigated, one of them being a pupa belonging to †<em>G. gracilis</em> (CASENT0741231), one adult belonging to †<em>G. gracilis</em> (CASENT0741232) and two adults of the newly described species †<em>G. sternorhabda</em> (CASENT0741233 and CASENT0741234). The adult specimen of †<em>G. gracilis</em> (CASENT0741232) had exception internal preservation, so higher magnification scans for anatomical details were performed. The dataset includes full body scans of all of these individuals, adjusted datasets in which the adult specimens were segmented out of the amber matrix (used for the volume renderings in the article) and the two head focused scans of †<em>G. gracilis</em> (CASENT0741232). The scanning parameters can be taken from the uploaded Scans Metadata Excel file, which is also part of the supplementary material of the related article. The two adult scans of †<em>G. sternorhabda</em> (CASENT0741233 and CASENT0741234) are in DICOM file format, all other data are in TIFF image format.</p>
Dataset: Sentiment Analysis annotation of News headlines covering the Olympic legacy of Rio 2016 and London 2012 published by the Brazilian and British online media
<p>Dataset of 464 news headlines with sentiment manually annotated by a domain expert using the labels positive, negative and neutral. Data contains URLs for news articles published between 2004-2020 by the British and Brazilian media in English and Brazilian Portuguese covering the Olympic legacies of London 2012 and Rio 2016. Articles were collected from the news outlets’ websites using Google search engine.</p> <p>News outlets:</p> <ul> <li>The Guardian</li> <li>Daily Mail</li> <li>Globo</li> <li>Estadao</li> </ul>
Data for analysis procedure for rectenna-based THz-spectroscopy as published in Lechelon et al., Sci. Adv. 8, eabl5855 (2022)
<p>Example of data for R-PE data processing </p>
FIG. 2 in Lectotypification of Indochinese Ebenaceae published by P. H. Lecomte (1925-1930)
FIG. 2. — Lectotype of Diospyros fleuryana A.Chev. ex Lecomte var. fleuryana, Chevalier 38854 (P00721602).
Figures 2-3 in Millipeds from the eastern Dakotas and western Minnesota, USA, with an account of Pseudopolydesmus serratus (Say, 1821) (Polydesmida: Polydesmidae); first published records from six states and the District of Columbia
Figures 2-3. Acropodite of left gonopod of Pseudopolydesmus serratus male from Fargo, Cass Co., North Dakota. 2) Mesal view. 3) Ectal view. en, endomerite; e2, e4, m1, m2, ectal and mesal processes as defined by Hoffman (1974). Scale line = 0.50 mm.
Figure 4 in Millipeds from the eastern Dakotas and western Minnesota, USA, with an account of Pseudopolydesmus serratus (Say, 1821) (Polydesmida: Polydesmidae); first published records from six states and the District of Columbia
Figure 4. Distribution of Pseudopolydesmus serratus showing peripheral localities. Upper star, type locality of Polydesmus canadensis Newport, 1844, type-species of Pseudopolydesmus; Lower Star, denoted by the arrow, approximate type locality of Polydesmus serratus Say, 1821, on the Eastern Shore of Virginia.
Model outputs of Wei et al. (2022): "Salt intrusion as a function of estuary length in periodically weakly stratified estuaries", published in Geophysical research Letters.
<p>The .mat file includes all model data used in the study "Salt intrusion as a function of estuary length in periodically weakly stratified estuaries", published in Geophyscial Research Letters, 2022. The .txt file contains description of all physical variables contained in the .mat file.</p>
News headlines of BBC articles published by @BBCBreaking twitter account
<p>The dataset consists of a list of news articles headlines retrieved from tweets published by @BBCBreaking profile in specific years (2012, 2015, 2017, 2019 and 2022).</p> <p>The dataset is in <code>.csv</code> format and is organised as follows:</p> <ul> <li>Columns: <ul> <li>ID (tweet ID)</li> <li>created_at (tweet publication's date)</li> <li>url (url of the news article attached to the tweet)</li> <li>Titles (news headline)</li> </ul> </li> <li>Rows: Each row contains a single news article headline sorted by date of publication (created_at). Total number of entries: 7213.</li> </ul> <p>For more details about data collection refer to <a href="https://github.com/caiocmello/news-mood">Github</a>.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.