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Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
162
datasets available to search
ShareScore release 0.9.0
Dataset results
162 results for “rna 3d”
The 3D Genomic Landscape of Differential Response to EGFR/HER2 Inhibition in Endocrine-Resistant Breast Cancer [RNA-seq]
GEO Series GSE144378. Homo sapiens. 18 samples. Type: Expression profiling by high throughput sequencing.
The ultra-sensitive Nodewalk technique identifies stochastic from virtual, population-based enhancer hubs regulating MYC in 3D: Implications for the fitness of cancer cells [RNA-seq]
GEO Series GSE76041. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing.
The transition from quiescent to activated states in human hematopoietic stem cells is governed by dynamic 3D genome reorganization [RNA-Seq]
GEO Series GSE125063. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
3D Chromatin Remodeling Potentiates Transcriptional Programs Driving Cell Invasion [RNA-Seq]
GEO Series GSE183380. Homo sapiens. 9 samples. Type: Expression profiling by high throughput sequencing.
Generation of 3D tubular bile duct within human iPSC-derived liver organoid by incorporating human iPSC-derived blood vessel [RNA-seq]
GEO Series GSE198888. Homo sapiens. 10 samples. Type: Expression profiling by high throughput sequencing.
RNA-Seq analysis of Harlequin Ichrthyosis skin, HI 3D model ABCA12 CRISPR-Cas9 KO cell line
GEO Series GSE131903. Homo sapiens. 15 samples. Type: Expression profiling by high throughput sequencing.
Bivalent activity of super-enhancer RNA LINC02454 controls 3D chromatin structure and regulates glioma sensitivity to temozolomide.
GEO Series GSE229600. Homo sapiens. 25 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
G-quadruplex DNA contributes to RNA polymerase II-mediated 3D chromatin architecture [HiChIP]
GEO Series GSE222206. Homo sapiens. 4 samples. Type: Other.
The single-cell transcriptomic atlas and RORA-mediated 3D epigenomic remodeling in driving corneal epithelial differentiation [RNA-Seq]
GEO Series GSE248926. Homo sapiens. 10 samples. Type: Expression profiling by high throughput sequencing.
Genetic Variations in Type 1 Diabetes Reconfigure the 3D Chromatin Organization of T Cells [RNA-seq]
GEO Series GSE141852. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
Gene expression profiling via RNA sequencing of patient brain tumors cultured in 3D bioengineered cultures
GEO Series GSE134567. Homo sapiens. 16 samples. Type: Expression profiling by high throughput sequencing.
RNA sequencing data of germ cell tumor cell lines co-cultured with microenvironmental cells in 3D
GEO Series GSE195794. Homo sapiens. 40 samples. Type: Expression profiling by high throughput sequencing.
Dynamic 3D chromosomal landscapes in acute leukemia [RNA-Seq]
GEO Series GSE115895. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing.
Transcriptional Regulation of human NMNAT2: Insights from 3D Genome Sequencing and Bioinformatics [RNA-seq]
GEO Series GSE281454. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
3D genomics across the tree of life reveals condensin II as a determinant of architecture type [RNA-Seq]
GEO Series GSE163640. Homo sapiens. 9 samples. Type: Expression profiling by high throughput sequencing.
Investigation of 3D Chromatin Architecture Rewiring During Muscle Satellite Cells activation and aging [RNA-seq aging]
GEO Series GSE189839. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
single cell RNA-seq analysis of H9-derived expandable hepatoblast organoids and their derivatitives of functional polarized hepatocyte organoids under 3D suspended culture conditions
GEO Series GSE240097. Homo sapiens. 2 samples. Type: Expression profiling by high throughput sequencing.
Epigenetic modulation of a hardwired 3D chromatin landscape in two naive states of pluripotency. (RNA-seq)
GEO Series GSE92403. Mus musculus. 16 samples. Type: Expression profiling by high throughput sequencing.
Condensin II Counters Cohesin and RNA Polymerase II in 3D Chromatin Organization
GEO Series GSE118756. Drosophila melanogaster. 14 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
UV-induced reorganization of 3D genome mediates DNA damage response [RNA-Seq]
GEO Series GSE268349. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.