Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
145
datasets available to search
ShareScore release 0.9.0
Dataset results
145 results for “single-cell RNAseq”
Single-cell RNASeq analysis to unravel molecular networks driving leukemia in Ebf1+/-Pax5+/- (dHet) B-ALL mice
GEO Series GSE158827. Mus musculus. 68 samples. Type: Expression profiling by high throughput sequencing.
Single-cell RNAseq analysis (10X Genomics Chromium) of refilled lung interstium macrophages on day 4 after depletion
GEO Series GSE193894. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.
single-cell RNAseq data (data set 13) in the publication scFASTCORMICS: A contextualization algorithm to reconstruct metabolic multi-cell population models from single-cell RNAseq data
<p>The present dataset (dataset13) was used as input to build scFASTCORMICS models. The files correspond to the clusters identified by Seurat in the single-cell data from pancreas donor11 downloaded from the GEO website (<strong>GSE114297). </strong></p> <p>see the protocol: scFASTCORMICS: A contextualization algorithm to reconstruct metabolic multi-cell population models from single-cell RNAseq data</p> <p>and github: <a href="https://github.com/sysbiolux/scFASTCORMICS">https://github.com/sysbiolux/scFASTCORMICS</a></p> <p>For more information, version updates of the scFASTCORMICS. </p>
single-cell RNAseq data (data set 10) in the publication scFASTCORMICS: A contextualization algorithm to reconstruct metabolic multi-cell population models from single-cell RNAseq data
<p>The present dataset (dataset10) was used as input to build scFASTCORMICS models. The files correspond to the clusters identified by Seurat in the single-cell data from pancreas donor8 downloaded from the GEO website (<strong>GSE114297). </strong></p> <p>see the protocol: scFASTCORMICS: A contextualization algorithm to reconstruct metabolic multi-cell population models from single-cell RNAseq data</p> <p>and github: https://github.com/sysbiolux/scFASTCORMICS</p> <p>For more information, version updates of the scFASTCORMICS. </p>
single-cell RNAseq data (data set 6) in the publication scFASTCORMICS: A contextualization algorithm to reconstruct metabolic multi-cell population models from single-cell RNAseq data
<p>The present dataset (dataset6) was used as input to build scFASTCORMICS models. The files correspond to the clusters identified by Seurat in the single-cell data from pancreas donor4 downloaded from the GEO website (<strong>GSE114297). </strong></p> <p>see the protocol: scFASTCORMICS: A contextualization algorithm to reconstruct metabolic multi-cell population models from single-cell RNAseq data</p> <p>and github: <a href="https://github.com/sysbiolux/scFASTCORMICS">https://github.com/sysbiolux/scFASTCORMICS</a></p> <p>For more information, version updates of the scFASTCORMICS. </p>
single-cell RNAseq data (data set 2) in the publication scFASTCORMICS: A contextualization algorithm to reconstruct metabolic multi-cell population models from single-cell RNAseq data
<p>The present dataset (dataset2) was used as input to build scFASTCORMICS models. The files correspond to the clusters identified by Seurat in the single-cell data from normal mucosa samples downloaded from the GEO website (<strong>GSE81861). </strong></p> <p>see the protocol: scFASTCORMICS: A contextualization algorithm to reconstruct metabolic multi-cell population models from single-cell RNAseq data</p> <p>and github: https://github.com/sysbiolux/scFASTCORMICS</p> <p>For more information, version updates of the scFASTCORMICS. </p>
Single-cell RNAseq Breast Cancer
ClinicalTrials.gov study NCT05807516. IPD Sharing: UNDECIDED. Countries: 1. Publications: 0.
Single-cell RNAseq analysis of Gli1-GFP+ tooth roor progenitor cells and PTHrP+ dental follicle cells of the murine molar
GEO Series GSE237439. Mus musculus. 1 samples. Type: Expression profiling by high throughput sequencing.
Single-cell RNAseq datasets supporting the role of primary cilia to drive region-specific diversification of astrocytes within the developing brain
GEO Series GSE253640. Mus musculus. 10 samples. Type: Expression profiling by high throughput sequencing.
Single-cell RNAseq of Basal Cell Carcinoma (BCC) mouse models
GEO Series GSE290180. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
Single-cell RNAseq of the human normal and emphysema lung
GEO Series GSE196638. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Single-Cell ATAC+RNAseq from CD34+ cells of a Primary Myelofibrosis patient evolved to secondary Acute Myeloid Leukemia
GEO Series GSE221946. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
10x single-cell RNAseq profiling of influenza Virus infected Human Lung Tissue Explants (HLTE)
GEO Series GSE268542. Homo sapiens. 2 samples. Type: Expression profiling by high throughput sequencing.
Single-cell RNAseq of human pancreatic islets from control and type 2 diabetes donors
GEO Series GSE153855. Homo sapiens. 11 samples. Type: Expression profiling by high throughput sequencing.
Single-cell RNAseq analysis of renal endothelial cells in murine diabetic nephropathy
GEO Series GSE192687. Mus musculus. 5464 samples. Type: Expression profiling by high throughput sequencing.
Single-cell RNAseq (10x Genomics) analysis of human CD4+ T cells in IPEX patients, healthy donors and heterozygous mothers (blood).
GEO Series GSE167976. Homo sapiens. 29 samples. Type: Expression profiling by high throughput sequencing.
Single-Cell RNAseq analysis of diffuse neoplastic infiltrating cells at the migrating front of human glioblastoma
GEO Series GSE84465. Homo sapiens. 3589 samples. Type: Expression profiling by high throughput sequencing.
10X single-cell RNASeq profiling of immune infiltrate from Adar1 KO and Wildtype B16 Melanoma
GEO Series GSE110746. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
Single-cell or nucleus RNAseq of neuroblastoma patient-derived xenografts
GEO Series GSE228957. Mus musculus; Homo sapiens. 17 samples. Type: Expression profiling by high throughput sequencing.
Single-cell RNAseq anaysis of 4-month-old brain organoids from feeder-free iPSCs with PD173074 treatment
GEO Series GSE195690. Homo sapiens. 1 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.