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117
datasets available to search
ShareScore release 0.9.0
Dataset results
117 results for “spatial niche”
Spatial transcriptome profiling by MERFISH reveals fetal liver hematopoietic stem cell niche architecture [bulk RNA-seq]
GEO Series GSE172128. Mus musculus. 1 samples. Type: Expression profiling by high throughput sequencing.
Integrated multi-omics reveals cellular and molecular interactions governing the invasive niche of basal cell carcinoma (Digital Spatial Profiling)
GEO Series GSE210648. Homo sapiens. 95 samples. Type: Expression profiling by array.
Transcriptome Response and Spatial Pattern of Gene Expression in the Primate Subventricular Zone Neurogenic Niche After Cerebral Ischemia
GEO Series GSE136036. Macaca fuscata. 18 samples. Type: Expression profiling by high throughput sequencing.
CRATER tumor niches facilitate CD8+ T cell engagement and correspond with immunotherapy success [Spatial transcriptomics]
GEO Series GSE312604. Danio rerio. 1 samples. Type: Other.
In situ spatial transcriptomics reveal novel markers of the limbal stem cell niche and ocular surface epithelia
GEO Series GSE315587. Mus musculus. 36 samples. Type: Other.
Crops grown in mixtures show niche partitioning in spatial water uptake
<p>Data set for the study <strong>Crops grown in mixtures show niche partitioning in spatial water uptake</strong></p>
Sex-biased architecture guides T cell development through spatially defined niches - CODEX images
Open the record for dataset details and reuse information.
Spatially discrete signalling niches regulate fibroblast heterogeneity in human lung cancer
GEO Series GSE153032. Homo sapiens. 5 samples. Type: Expression profiling by high throughput sequencing.
Single-cell spatial transcriptomic profiling defines a pathogenic inflammatory niche in chronic active multiple sclerosis lesions - snRNA-seq
GEO Series GSE301908. Homo sapiens. 17 samples. Type: Expression profiling by high throughput sequencing.
Single-cell spatial profiling of small cell lung cancer suggests clinical outcome related tumor heterogeneity and immune colony niche
<p>High-dimension processed tif images of the publication "<strong>Spatial evolution and colony landscape of small cell lung cancer</strong>". The code used to produce the results of this study is available at <a href="https://github.com/ wangjun-hub/CODEX_SCLC">https://github.com/ wangjun-hub/CODEX_SCLC</a>.</p>
Single-cell spatial transcriptomic profiling defines a pathogenic inflammatory niche in chronic active multiple sclerosis lesions - Microglia cell culture
GEO Series GSE301696. Mus musculus; synthetic construct. 4 samples. Type: Other.
A spatial atlas of colorectal cancer reveals the influence of stromal niches on tumour differentiation
GEO Series GSE303070. Homo sapiens. 352 samples. Type: Other.
Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis [Visium]
GEO Series GSE276934. Homo sapiens. 1 samples. Type: Other.
The covariance environment defines cellular niches for spatial inference
GEO Series GSE246395. Mus musculus. 1 samples. Type: Expression profiling by high throughput sequencing.
Single-cell resolution spatial analysis of antigen-presenting cancer-associated fibroblast niches [Xenium PDAC]
GEO Series GSE274673. Homo sapiens. 6 samples. Type: Other.
Single-cell resolution spatial analysis of antigen-presenting cancer-associated fibroblast niches [scRNA-seq]
GEO Series GSE274609. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
Single-cell resolution spatial analysis of antigen-presenting cancer-associated fibroblast niches [Xenium PM]
GEO Series GSE274623. Homo sapiens. 8 samples. Type: Other.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.