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Fig. 5. Testate amoebae from the top 20 in The Use of Testate Amoebae in Monitoring Peatland Restoration Management: Case Studies from North West England and Ireland
Fig. 5. Testate amoebae from the top 20 cm of Holcroft Moss, data are presented as percentages of the total testates in each level. The diagram has been subdivided into zones (HM I – HMIV) to better aid interpretation. The zones were defined by a combination of simple inspection and multivariate analysis.
Fig. 8. Core ARD 2 in The Use of Testate Amoebae in Monitoring Peatland Restoration Management: Case Studies from North West England and Ireland
Fig. 8. Core ARD 2 selected percentage testate amoebae diagram, data are presented as percentages of the total testates in each level. The diagram has been subdivided into zones to better aid interpretation. Note that in the older literature (including all the more accessible identification guides) Archerella flavum is refered to as Amphitrema flavum.
Fig. 7. Core ARD 1 in The Use of Testate Amoebae in Monitoring Peatland Restoration Management: Case Studies from North West England and Ireland
Fig. 7. Core ARD 1 selected percentage testate amoebae diagram, data are presented as percentages of the total testates in each level. The diagram has been subdivided into zones to better aid interpretation. Note that in the older literature (including all the more accessible identification guides) Archerella flavum is refered to as Amphitrema flavum and Padaungiolla lageniformis is called Nebela lageniformis.
Figure 4 in Estimation of individual growth of the violet oyster Chama coralloides Reeve, 1846 (Bivalvia: Venerida) using Schnute model cases
Figure 4. Fitted growth curves for the best cases of the Schnute model for a population of C. coralloides in Acapulco, Guerrero, Mexico (* indicates the best model).
Figure 2 in Estimation of individual growth of the violet oyster Chama coralloides Reeve, 1846 (Bivalvia: Venerida) using Schnute model cases
Figure 2. Monthly frequency distribution of lengths (bars) and modal groups (curves) for C. coralloides in Acapulco, Guerrero, Mexico.
Fig. 2 in Use of ITS-1 to identify Bactrocera dorsalis and Bactrocera occipitalis (Diptera: Tephritidae): a case study using flies trapped in California from 2008 to 2018
Fig. 2. ML tree (log likelihood –1370.3141) of elongation factor 1‑alpha (EF1α) gene based on Jukes‑Cantor model. The California fly (16V457) with Bactrocera occipitalis ITS‑1 sequence is marked with an open circle dot. Five flies trapped in California that have ITS‑1 sequences that match Bactrocera dorsalis and reported in Barr et al. (2014a) are marked with black dots.
Fig. 1 in Use of ITS-1 to identify Bactrocera dorsalis and Bactrocera occipitalis (Diptera: Tephritidae): a case study using flies trapped in California from 2008 to 2018
Fig. 1. ML tree (log likelihood –2782.3671) of C3p790 fragment of COI gene based on the Tamura model with Gamma distributed rates and Invariant sites (T92+G+I). The California fly (16V457) with Bactrocera occipitalis ITS‑1 sequence is marked with an open circle dot. Five flies trapped in California that have ITS‑1 sequences that match Bactrocera dorsalis and reported in Barr et al. (2014a) are marked with black dots. Operational Taxonomic Units and branches are collapsed for species in clades. The collapsed B. dorsalis clade includes both B. dorsalis and B. carambolae records.
Fig. 5 in Use of ITS-1 to identify Bactrocera dorsalis and Bactrocera occipitalis (Diptera: Tephritidae): a case study using flies trapped in California from 2008 to 2018
Fig. 5. Images of thoraces of the fly (16V457) with Bactrocera occipitalis ITS‑1 sequence and a Bactrocera dorsalis fly. Areas without microtrichia are highlighted in green in the smaller pictures.
Using ELN Functionality of Kadi4Mat (KadiWeb) in a Materials Science Case Study of a User Facility
<p>This record contains the dataset belonging to the paper "Using ELN Functionality of Kadi4Mat (KadiWeb) in a Materials Science Case Study of a User Facility"</p>
Linked collectors and determiners for: Streamlining the use of BOLD specimen data to record species distributions: a case study with ten Nearctic species of Microgastrinae (Hymenoptera: Braconidae).
Natural history specimen data linked to collectors and determiners held within, "Streamlining the use of BOLD specimen data to record species distributions: a case study with ten Nearctic species of Microgastrinae (Hymenoptera: Braconidae)". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/3a8a3458-675f-46f1-abbc-6e089059e5e8">https://bionomia.net/dataset/3a8a3458-675f-46f1-abbc-6e089059e5e8</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/3a8a3458-675f-46f1-abbc-6e089059e5e8">https://gbif.org/dataset/3a8a3458-675f-46f1-abbc-6e089059e5e8</a>. Formatted as a Frictionless Data package.
Spectrum-Based Feature Localization: A Case Study using ArgoUML
<p>ArgoUML dataset used in the paper: "Spectrum-Based Feature Localization: A Case Study using ArgoUML".</p> <p>This enables reproducibility, evaluation, and comparison of our study.</p> <p>In the folder ArgoUML you will find: </p> <ul> <li><em>ArgoUML_Tests_Annotated</em>. This folder contains the variants used for running test cases and obtaining execution traces from the test scenarios.</li> <li><em>BenchmarkTracesComparison</em>. This folder contains the results metrics with the granularity of the ArgoUML benchmark (see Martinez et al., 2018. https://doi.org/10.1145/3233027.3236402) and the execution traces from manual and test cases for each feature from previous work (see Michelon et al., 2021. https://doi.org/10.1145/3442391.3442403).</li> <li><em>VariantsSourceCodeComparison. </em>This folder contains the results metrics with the granularity at the method- and line-level and execution traces from manual and test cases for each feature from previous work (see Michelon et al., 2021. https://doi.org/10.1145/3442391.3442403).</li> </ul>
FIG. 31 in First Systematic Study using the Variability of the Residual Colour Patterns: The Case of the Paleogene Seraphsidae (Mollusca, Gastropoda, Stromboidea)
FIG. 31. — New stratigraphic ranges of the Paleogene Seraphsidae Jung, 1974: 1, Seraphs volutatus (Solander in Brander, 1766); 2, Seraphs olivaceus (Cossmann, 1889); 3, Seraphs chilophorus (Cossmann, 1889); 4, Seraphs peterjungi n. sp.; 5, Seraphs leukoleptus Jung, 1974; 6, Seraphs sp. 1; 7, Seraphs sp. 2; 8, Seraphs sopitus (Solander in Brander, 1766); 9, Seraphs subconvolutus (d'Orbigny, 1852); 10, Diameza (s.s.) fragilis (Defrance, 1825); 11, Diameza (Miniseraphs) eratoides (Cossmann, 1889); 12, Diameza (Miniseraphs) isabella (Bernay in Deshayes, 1865); 13, Paraseraphs praecedens n. sp.; 14, Paraseraphs tetanus Jung, 1974; 15, Paraseraphs placitus Jung, 1974; 16, Paraseraphs armoricus (Vasseur, 1882).
FIG. 28 in First Systematic Study using the Variability of the Residual Colour Patterns: The Case of the Paleogene Seraphsidae (Mollusca, Gastropoda, Stromboidea)
FIG. 28. — Paraseraphs placitus Jung, 1974 under UV light: A-G, MNHN A28961 (leg. Pacaud), Fercourt, Oise, France, Lutetian; A, ventral view; B, labral view; C, detailed view of the outer lip; D, detailed view of the adapical part of the outer lip; E, detailed view of the dots; F, dorsal view; G, detailed view of the subsutural part; H, I, MNHN A28960 (leg. Pacaud), Parnes, Oise, France, Lutetian; H, dorsal view; I, abapertural view; J-L, MNHN A28963 (Ballot coll.), Grignon, Yvelines, France, Lutetian; J, ventral view; K, dorsal view; L, detailed view of the dots; M, N, MNHN A28966 (Boule coll.), Chaussy (Les Garennes), Val d'Oise, France, Lutetian; M, detailed view of the apical part; N, dorsal view; O, P, MNHN A28964 (Ballot coll.), Grignon, Lutetian; O, dorsal view; P, labral view. Scale bars: A, B, F, H-K, N-P, 10 mm; C-E, G, L, M, 2 mm. Photographs by C. Lemzaouda (MNHN).
FIG. 27 in First Systematic Study using the Variability of the Residual Colour Patterns: The Case of the Paleogene Seraphsidae (Mollusca, Gastropoda, Stromboidea)
FIG. 27. — Distribution of the pattern types with their intermediaries (Inter.) in Paraseraphs tetanus Jung, 1974.
FIG. 29 in First Systematic Study using the Variability of the Residual Colour Patterns: The Case of the Paleogene Seraphsidae (Mollusca, Gastropoda, Stromboidea)
FIG. 29. — Paraseraphs Jung, 1974 shells in normal light: A-C, P. armoricus (Vasseur, 1882), MNHN A28788 (leg. Pacaud), Saffré (Bois-Gouët), Loire-Atlantique, France, Bartonian;A, ventral view; B, detailed view of the adapical part of the aperture; C, labral view; D, P. tetanus Jung, 1974, MNHN A29224 (ventral view) (Ferry coll.), Cuise-Lamotte, Oise, France, Ypresian (Cuisian), in comparison to P. armoricus and P. praecedens n. sp.; E, F, P. praecedens n. sp., holotype MNHN A05707 (leg. Pacaud), Abbecourt, Oise, France, Thanetian; E, ventral view; F, dorsal view. Scale bars: A, C, D-F, 10 mm; B, 5 mm. Photographs by C. Lemzaouda (MNHN).
FIG. 24 in First Systematic Study using the Variability of the Residual Colour Patterns: The Case of the Paleogene Seraphsidae (Mollusca, Gastropoda, Stromboidea)
FIG. 24. — Paraseraphs Jung, 1974 shells in normal light: A-F, P. tetanus Jung, 1974; A-C, MNHN A28579 (Faullummel coll.), Saint- Gobain, Aisne, France, Ypresian (Cuisian); A, ventral view; B, labral view; C, dorsal view; D-F, MNHN A28787 (Ferry coll.), Cuise- Lamotte (Butte-des-Usages), Oise, France, Ypresian (Cuisian); D, ventral view; E, labral view; F, dorsal view; G-M, P. placitus Jung, 1974; G-J, MNHN A28786 (Lhomme coll.), Chaussy (Les Garennes), Val d'Oise, France, Lutetian; G, ventral view; H, labral view; I, detailed view of the apical part; J, dorsal view; K, MNHN A28962 (detailed view of the basal part) (leg. Pacaud), Fercourt, Oise, France, Lutetian; L, M, MNHN A28774 (Lhomme coll.), Chaussy (Les Garennes), Lutetian; L, dorsal view; M, labral view. Scale bars: A-H, J, L, M, 10 mm; I, 5 mm; K, 2 mm. Photographs by C. Lemzaouda (MNHN).
FIG. 26 in First Systematic Study using the Variability of the Residual Colour Patterns: The Case of the Paleogene Seraphsidae (Mollusca, Gastropoda, Stromboidea)
FIG. 26. — Variability of Paraseraphs tetanus Jung, 1974 in dorsal view and under UV light: A, MNHN A28948, Cuise-Lamotte (Butte-des- Usages), Oise, France, Ypresian (Cuisian); B, MNHN A28943, Cuise-Lamotte (Butte-des-Usages), Ypresian (Cuisian); C, MNHN A28944, Cuise-Lamotte (Butte-des-Usages),Ypresian (Cuisian);D, E, MNHN A28952, Cuise-Lamotte (Butte-des-Usages), Ypresian (Cuisian);E, detailed view of the dots; F, G, MNHN A28946, Cuise-Lamotte (Butte-des-Usages), Ypresian (Cuisian); G, detailed view of the dots; H, MNHN A28949,Cuise-Lamotte (Butte-des-Usages),Ypresian (Cuisian);I, MNHN A28579 (Faullummel coll.), Saint-Gobain, Aisne,France,Ypresian (Cuisian); J, MNHN A28953, Cuise-Lamotte (Butte-des-Usages), Ypresian (Cuisian); K, MNHN A28956 (Faullummel coll.), Saint-Gobain, Ypresian (Cuisian); L, MNHN A28954, Cuise-Lamotte (Butte-des-Usages), Ypresian (Cuisian); M, MNHN A28955, Cuise-Lamotte (Buttedes-Usages), Ypresian (Cuisian); N, MNHN A28958 (Faullummel coll.), Saint-Gobain, Ypresian (Cuisian); O, MNHN A28951, Cuise-Lamotte (Butte-des-Usages), Ypresian (Cuisian); P, MNHN A28950, Cuise-Lamotte (Butte-des-Usages), Ypresian (Cuisian); Q, MNHN A28957, Cuise-Lamotte (Butte-des-Usage), Ypresian (Cuisian); R, MNHN A28959 (Faullummel coll.), Saint-Gobain, Ypresian (Cuisian); A-G, Type 1; H-N, intermediaries 1-2; O-R, Type 2. Scale bars: A-D, F, H-R, 10 mm; E, G, 2 mm. Photographs by C. Lemzaouda (MNHN).
FIG. 23 in First Systematic Study using the Variability of the Residual Colour Patterns: The Case of the Paleogene Seraphsidae (Mollusca, Gastropoda, Stromboidea)
FIG. 23. — Diameza (Miniseraphs) isabella (Bernay, 1889) under UV light: A-D, neotype, MNHN A28935 (leg. Pacaud), Chaussy (Les Garennes), Val d'Oise, France, Lutetian; A, ventral view; B, labral view; C, dorsal view; D, abapertural view; E, MNHN A28938 (labral view) (leg. Pacaud), Chaussy (Les Garennes), Lutetian; F-J, MNHN A28937 (Faullummel coll.), Chaussy (Les Garennes), Lutetian; F, detailed view of the axial and zigzaging lines; G, ventral view; H, detailed view of the axial lines; I, abapertural view; J, dorsal view; K-P, MNHN A28936, Chaussy (Les Garennes), Lutetian; K, ventral view; L, labral view; M, dorsal view; N, detailed view of the zigzaging axial lines; O, dorsal view in negative; P, abapertural view. Scale bars: A-E, G, I-M, O-P, 10 mm; F, H, N, 2 mm. Photographs by C. Lemzaouda (MNHN).
FIG. 21 in First Systematic Study using the Variability of the Residual Colour Patterns: The Case of the Paleogene Seraphsidae (Mollusca, Gastropoda, Stromboidea)
FIG. 21. — Diameza (s.s.) fragilis (Defrance, 1825) under UV light: A-F, neotype, MNHN A28939 (leg. Pacaud), Villiers-Saint-Frédéric, Yvelines, France, Lutetian; A, dorsal view; B, detailed view of the chessboard pattern; C, labral view; D, abapertural view; E, detailed view of the chessboard pattern; F, detailed view of the lines; G-I, MNHN A28940 (Faullummel coll.), Villiers-Saint-Frédéric, Lutetian; G, dorsal view; H, detailed view of the zigzagging lines; I, labral view; J, K, MNHN A28784 (Faullummel coll.), Villiers-Saint-Frédéric, Lutetian; J, dorsal view; K, labral view; L-N, MNHN A28942, Villiers-Saint-Frédéric, Lutetian; L, dorsal view; M, detailed view of the zigzagging lines; N, labral view. Scale bars: A, C-D, G, I-L, N, 5 mm; B, E, F, 1 mm; H, M, 2 mm. Photographs by C. Lemzaouda (MNHN).
FIG. 20 in First Systematic Study using the Variability of the Residual Colour Patterns: The Case of the Paleogene Seraphsidae (Mollusca, Gastropoda, Stromboidea)
FIG. 20. — Diameza Deshayes, 1865 shells in normal light: A-E, Diameza (s.s.) fragilis (Defrance, 1825), MNHN A28784 (Faullummel coll.), Villiers-Saint-Frédéric,Yvelines, France, Lutetian; A, ventral view; B, detailed view of the apical part; C, labral view; D, detailed view of the oblique grooves; E, dorsal view; F-J, Diameza (Miniseraphs) eratoides (Cossmann, 1889);F-H, MNHN A28785 (Faullummel coll.), Chaussy (Les Garennes), Val d'Oise, France, Lutetian; F, ventral view; G, labral view; H, dorsal view; I, MNHN A28934 (detailed view of the oblique grooves) (leg. Pacaud),Fontenay-en-Vexin (Beauregard),Eure, France, Lutetian; J, MNHN B63254 (dorsal view) (Lhomme coll.), Hervelon, Marne, France, Lutetian; K -O, Diameza (Miniseraphs) Isabella (Bernay in Deshayes, 1865); K, L, MNHN A28782 (leg.Pacaud), Parnes, Oise, France, Lutetian; K, ventral view; L, dorsal view; M-O, MNHN A28783 (leg. Pacaud), Cauvigny, Oise, France, Lutetian; M, ventral view; N, labral view; O, dorsal view. Scale bars: A, C, E-H, J-O, 5 mm; B, D, 1 mm; I, 2 mm. Photographs by C. Lemzaouda (MNHN).
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.