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167 results for “x-ray imaging”
Next Generation X-ray Imaging System
ClinicalTrials.gov study NCT04571099. IPD Sharing: Not stated. Countries: 1. Publications: 2.
Bridging the analog divide: A comparison of printed X-ray films and digital images when using computer-aided detection software for tuberculosis screening
Open the record for dataset details and reuse information.
FIGURES 11–12 in First fossil Micropholcommatidae (Araneae), imaged in Eocene Paris amber using X-Ray Computed Tomography
FIGURES 11–12. Photographs of Cenotextricella simoni sp. nov. (male holotype, MNHN PA 327) using traditional light microscopy. (1) dorsal view; (2) ventral view. See Fig. 5 for scale.
FIGURES 1–10 in First fossil Micropholcommatidae (Araneae), imaged in Eocene Paris amber using X-Ray Computed Tomography
FIGURES 1–10. VHR-CT scans of Cenotextricella simoni sp. nov. (male holotype, MNHN PA 327). (1) dorsal view; (2) ventral view; (3) anterior view; (4) posterior view; (5) lateral view; (6) lateral sectioned view; (7) right pedipalp dorsal view; (8) right pedipalp posterior view; (9) left pedipalp retrolateral view; (10) right pedipalp prolateral view. Abbreviations: ALE, anterior lateral eye; AME, anterior median eye; c, conductor; cy, cymbium; ds, dorsal abdominal scutum; e, embolus; fe, femur; mt/t, metatarsus/tarsus joint; pa, patella; PLE, posterior lateral eye; PME, posterior median eye; st, sternum; th, tibial hook; ti, tibia; vs, ventral abdominal scutum.
FIGURES 8–21 in A new species of anapid spider (Araneae: Araneoidea, Anapidae) in Eocene Baltic amber, imaged using phase contrast X-ray computed micro-tomography
FIGURES 8–21. CT reconstructions of Balticoroma wheateri new species (male holotype, GPIH). (8) frontal view showing chelicerae and labral spur; (9) view of right pedipalp showing embolus; (10–14) various views of right metatarsus 1, showing y-shaped clasping structure; (15) anterior view of specimen showing the section taken through the chelicerae to produce the raw data slice in Figure 16; (16) raw data slice demonstrating that the chelicerae and clypeal extentions are clearly separated; (20–21) various views of the right pedipalp. C, chelicera; ce, clypeal extension; co, dorsal cymbial outgrowth; cy, cymbium; e, embolus; eb, embolic base; ec, embolic coil;?fc, functional conductor sensu Wunderlich (2004); ls, labral spur; t, tegulum.
FIGURE 1 in A new species of anapid spider (Araneae: Araneoidea, Anapidae) in Eocene Baltic amber, imaged using phase contrast X-ray computed micro-tomography
FIGURE 1. Microphotograph of Balticoroma wheateri new species (male holotype, GPIH). Body length = 1.8 mm.
FIGURES 2–7 in A new species of anapid spider (Araneae: Araneoidea, Anapidae) in Eocene Baltic amber, imaged using phase contrast X-ray computed micro-tomography
FIGURES 2–7. CT reconstructions of Balticoroma wheateri new species (male holotype, GPIH). (2) right lateral view; (3) left lateral view; (4) dorsal view; (5) ventral view; (6) anterior view; (7) posterior view. Body length = 1.8 mm. Mt1, metatarsus 1; ta1, tarsus 1; ti1, tibia 1.
X-Ray diffraction images from a crystal of GmhA with inhibitor mut148591 - PDB 8V2T
<p>B. pseudomallei GmhA with bound inhibitor (mut148591)</p><p>Crystal form xMJ1156</p><p>FL, WT protein with N-terminal Hexahistidine tag. </p><p>Collected at 1.1 Å</p><p>Rotation about omega. 360 frames at a width of 0.5°/frame = 180° total.</p><p>Raw data integrated and scaled in autoPROC. </p>
X-Ray diffraction images from a crystal of GmhA with inhibitor mut148233 - PDB 8V4J
<p>B. pseudomallei GmhA with bound inhibitor (mut148233)</p><p>Crystal form xMJ1159</p><p>FL, WT protein with N-terminal Hexahistidine tag. </p><p>Collected at 1.075 Å</p><p>Rotation about omega. 600 frames at a width of 0.3°/frame = 180° total.</p><p>Raw data integrated and scaled in autoPROC. </p>
Time-Resolved X-ray Phase-Contrast Video Imaging of Continuous Anti-Solvent Crystallisation
<p>X-ray phase-contrast video showing early crystal growth in a continuous anti-solvent crystalliser. Data was collected on the Diamond Light source I13-2 beamline. For further information see the paper:</p> <p>@article{das_pallipurath_leng_wanelik_mcginty_miller_kathyola_chang_al-madhagi_marathae_et<br> al._2020,<br> place={Cambridge},<br> title={Time-Resolved X-ray Phase-Contrast Imaging (XPCI) of Nucleation and Crystal Growth in the Anti-Solvent Crystallization of Lovastatin},<br> DOI={10.26434/chemrxiv.12911168.v1},<br> journal={ChemRxiv},<br> publisher={Cambridge Open Engage},<br> author={Das, Gunjan and Pallipurath, Anuradha and Leng, Joanna and Wanelik, Kazimir<br> and McGinty, John and Miller, Russell and Kathyola, Thokozile and Chang,<br> Sin-Yuen and Al-Madhagi, Laila H. and Marathae, Shashidhara and et<br> al.},<br> year={2020},<br> note={This content is a preprint and has not been peer-reviewed.}<br> }</p>
Reprocessed / rebinned to 0.5 degree images: Beta-Lactamase X-ray diffraction data recorded at Diamond Light Source I04 as part of commissioning & development
<p>Derived from https://zenodo.org/record/841060; made more compact (though no longer "raw" data) for use in tutorials</p>
Whole-body X-ray images of laying hens with keel bone annotations and masks for training deep learning models
<p>This dataset contains whole-body x-ray images of laying hens (n=1051), with the corresponding keel bone annotations and masks. This dataset was basically used to train deep learning models to segment the keel bone from the whole-body x-ray images. But can be used by others for further developments of similar models. This dataset was generated during the research project funded by Svenska Forskningsrådet Formas (2019-02116). The project aimed to develop a digital tool to assess bones of laying hens using x-ray imaging. All images are in JPEG format. All images are named with informative codes indicating bird ID, date and time of x-raying. For instance, in this "001_20230419_0957_PM.Dicom.jpg" image name, "001" stands for the bird ID, "20230419" for the x-raying date, "0957" for the x-raying time, and "PM.Dicom.jpg" indicates that the bird was x-rayed postmortem "PM" with "Dicom" file output and converted to the ".jpg" format. </p> <p>Update on 28/08/2024: This dataset is linked to publication</p> <p>Sallam et al. (2024) Research Note: A deep learning method segments chicken keel bones from whole-body X-ray images,<br>Poultry Science, Volume 103, Issue 11, 2024, 104214, ISSN 0032-5791,<br>https://doi.org/10.1016/j.psj.2024.104214</p>
Chest X-Ray Image Dataset: A Resource for Medical Diagnosis and Machine Learning
<p>The Chest X-Ray Image Dataset is an extensive collection designed to support medical research and the development of diagnostic tools for COVID-19 detection. It consists of two distinct classes: COVID-19 affected X-ray images and normal X-ray images of the chest area, each covering the full lungs. This dataset provides a diverse range of X-ray images, capturing the unique characteristics of both healthy and COVID-19 affected lungs, making it an invaluable resource for training and testing machine learning models in medical image classification and analysis.</p>
X-Ray diffraction images for the crystal structure of the motor domain of human kinesin family member 22
<p>This dataset underlies Protein Data Bank entry 3BFN. Diffraction images are accompanied by HKL-3000 data reduction scripts and output files.</p>
X-ray diffraction images for Thiazole synthase from M. thermolithotrophicus.
<p>Anomalous data collected at ESRF (Grenoble, France) using beamline ID23-1. The crystal (Crystal form 3) was in the presence of the crystallophore Tb-Xo4.</p> <p> </p> <p>Related Publication: Engilberge et al. (2019)</p>
X-ray diffraction images for Adenylate kinase from M. thermolithotrophicus.
<p>Anomalous data collected at ESRF (Grenoble, France) using beamline ID23-1. The crystal was in the presence of the crystallophore Tb-Xo4.</p> <p> </p> <p>Related Publication: Engilberge et al. (2019)</p> <p>Data collection:</p> <p> Detector: PILATUS 6M. </p> <p> OSCILLATION_RANGE= 0.1000</p> <p> X-RAY_WAVELENGTH= 1.64862</p> <p> DETECTOR_DISTANCE= 183.94</p>
X-ray diffraction images for coenzyme F420H2 oxidase (FprA) from M. thermolithotrophicus.
<p>Anomalous data collected at SOLEIL (Saint Aubin, France) using beamline PROXIMA-2. The crystal (Crystal form 1) was in the presence of the crystallophore Tb-Xo4.</p> <p> </p> <p>Related Publication: Engilberge et al. (2019)</p> <p> </p> <p>Partial XDS file:</p> <p> OSCILLATION_RANGE= 0.10000000149 </p> <p> STARTING_ANGLE= 0.0 </p> <p> STARTING_FRAME= 1 </p> <p> X-RAY_WAVELENGTH= 1.648507 </p> <p> DETECTOR_DISTANCE= 102.540 </p> <p> DETECTOR= EIGER MINIMUM_VALID_PIXEL_VALUE= 0 OVERLOAD= 44419 </p> <p> DIRECTION_OF_DETECTOR_X-AXIS= 1.0 0.0 0.0 </p> <p> DIRECTION_OF_DETECTOR_Y-AXIS= 0.0 1.0 0.0 </p> <p> NX= 3110 NY= 3269 QX= 0.0750000035623 QY= 0.0750000035623 </p> <p> ORGX= 1509.33483887 ORGY= 1655.37805176 </p> <p> ROTATION_AXIS= 1.000000 0.000000 0.000000 </p> <p> INCIDENT_BEAM_DIRECTION= 0.0 0.0 1.0</p>
Body temperature protein X-ray crystallography at 37°C: A rhenium protein complex seeking a physiological condition structure: Raw Diffraction Images (112 week soak) Zenodo
<p>The labratory dataset of the raw diffraction images obtained after 112 weeks of soaking in the mother liquor and collected at a wavelength of 1.54 Å, illustrating the covalent coordination of the rhenium(I) tricarbonyl fragment to the His and Asp amino acid residues as well as other similarities when comparing the 37°C data set to 100K data set as described in the publication titled "Body temperature protein X-ray crystallography at 37°C: A rhenium protein complex seeking a physiological condition structure", written by Jacobs, Helliwell & Brink,<em> ChemComm</em>, 2024.</p> <p>The raw diffraction images for the labratory data sets are made available at the Zenodo research data archive, as specified in the publication.</p>
X-ray diffraction images of juvenile hormone diol kinase from the silk worm Bombyx mori
<p>X-ray diffraction images of juvenile hormone diol kinase (JHDK) from the silk worm Bombyx mori</p>
FIGURE 8. X-ray images showing internal structures. A in The test architecture of Clypeaster (Echinoidea, Clypeasteroida) and its phylogenetic significance
FIGURE 8. X-ray images showing internal structures. A, Clypeaster reticulatus Agassiz, 1863; NHM 1942.12.26.72. B, Clypeaster australasiae (Gray, 1851); NHM 1952.12.9.8. C, Clypeaster fervens Koehler, 1922; NHM 1948.12.9.17. D, Clypeaster japonicus Döderlein, 1885; NHM EE140012. E, Clypeaster rangianus Desmoulins, 1835; NHM 1957.7.2.48. F, Clypeaster rosaceus Linnaeus, 1758; NHM EE14011.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.