Find research datasets worth reusing

Linked collectors and determiners for: New insights into the phylogeny and taxonomy of Chinese Physospermopsis (Apiaceae).

Natural history specimen data linked to collectors and determiners held within, "New insights into the phylogeny and taxonomy of Chinese Physospermopsis (Apiaceae)". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/699f43c2-b33c-4720-9b41-44f7f2d4b83b">https://bionomia.net/dataset/699f43c2-b33c-4720-9b41-44f7f2d4b83b</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/699f43c2-b33c-4720-9b41-44f7f2d4b83b">https://gbif.org/dataset/699f43c2-b33c-4720-9b41-44f7f2d4b83b</a>. Formatted as a Frictionless Data package.

Linked collectors and determiners for: Revision of the Nearctic species of Gimnomera Rondani (Diptera: Scathophagidae) with morphological phylogeny and DNA barcodes.

Natural history specimen data linked to collectors and determiners held within, "Revision of the Nearctic species of Gimnomera Rondani (Diptera: Scathophagidae) with morphological phylogeny and DNA barcodes". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/e1297bcb-24e9-4306-8210-068cc6f5f482">https://bionomia.net/dataset/e1297bcb-24e9-4306-8210-068cc6f5f482</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/e1297bcb-24e9-4306-8210-068cc6f5f482">https://gbif.org/dataset/e1297bcb-24e9-4306-8210-068cc6f5f482</a>. Formatted as a Frictionless Data package.

Linked collectors and determiners for: The new Southeast Asian goblin spider genus Aposphragisma (Araneae, Oonopidae): diversity and phylogeny.

Natural history specimen data linked to collectors and determiners held within, "The new Southeast Asian goblin spider genus Aposphragisma (Araneae, Oonopidae): diversity and phylogeny". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/f99f3b15-7592-490f-9903-ce6b24131864">https://bionomia.net/dataset/f99f3b15-7592-490f-9903-ce6b24131864</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/f99f3b15-7592-490f-9903-ce6b24131864">https://gbif.org/dataset/f99f3b15-7592-490f-9903-ce6b24131864</a>. Formatted as a Frictionless Data package.

Linked collectors and determiners for: Mitogenomic phylogeny of the Asian colobine genus Trachypithecus with special focus on Trachypithecus phayrei (Blyth, 1847) and description of a new species.

Natural history specimen data linked to collectors and determiners held within, "Mitogenomic phylogeny of the Asian colobine genus Trachypithecus with special focus on Trachypithecus phayrei (Blyth, 1847) and description of a new species". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/532758c6-a328-4d53-82f5-592d22419678">https://bionomia.net/dataset/532758c6-a328-4d53-82f5-592d22419678</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/532758c6-a328-4d53-82f5-592d22419678">https://gbif.org/dataset/532758c6-a328-4d53-82f5-592d22419678</a>. Formatted as a Frictionless Data package.

Linked collectors and determiners for: Sexual Dimorphism of New Zealand Puppet Beetles (Aderidae, Coleoptera, Tenebrionoidea): Systematic Revision, Description of Three New Genera, and Phylogeny for Zenascus, gen. n..

Natural history specimen data linked to collectors and determiners held within, "Sexual Dimorphism of New Zealand Puppet Beetles (Aderidae, Coleoptera, Tenebrionoidea): Systematic Revision, Description of Three New Genera, and Phylogeny for Zenascus, gen. n.". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/11a122a9-8f3e-4a1c-a8d3-5ef3bea09b59">https://bionomia.net/dataset/11a122a9-8f3e-4a1c-a8d3-5ef3bea09b59</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/11a122a9-8f3e-4a1c-a8d3-5ef3bea09b59">https://gbif.org/dataset/11a122a9-8f3e-4a1c-a8d3-5ef3bea09b59</a>. Formatted as a Frictionless Data package.

Linked collectors and determiners for: Five new Palaearctic species of Docosia (Diptera: Mycetophilidae), with updated molecular phylogeny of the genus.

Natural history specimen data linked to collectors and determiners held within, "Five new Palaearctic species of Docosia (Diptera: Mycetophilidae), with updated molecular phylogeny of the genus". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/b9fb54f7-1883-4a6d-99b4-76f855a4d1cd">https://bionomia.net/dataset/b9fb54f7-1883-4a6d-99b4-76f855a4d1cd</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/b9fb54f7-1883-4a6d-99b4-76f855a4d1cd">https://gbif.org/dataset/b9fb54f7-1883-4a6d-99b4-76f855a4d1cd</a>. Formatted as a Frictionless Data package.

opencc-by-4.0Dec 2001View details →

TABLE 1 in Towards a molecular systematics of the genus Criniger, and a preliminary phylogeny of the bulbuls (Aves, Passeriformes, Pycnonotidae)

TABLE 1. — List of samples used in this study, and their origin. Abbreviations: AMNH, American Museum of Natural History; ANSP, Academy of Natural Sciences in Philadelphia; FMNH, Field Museum of Natural History; MNHN, Muséum national d’Histoire naturelle; 1, cf Chappuis & Érard 1993.<table><tbody><tr><th>Species</th><th>Origin</th><th>Collection and Number</th><th>Genbank numbers</th></tr><tr><th>12S</th><th>16S</th></tr></tbody><tbody><tr><th>Tyrannus melancholicus</th><td>South America</td><td>MNHN, n°12-33</td><td>AF386462</td><td>AF135058</td></tr><tr><th>Coracina melaschitos</th><td>Laos</td><td>MNHN, n°6-69</td><td>AF386464</td><td>AF391229</td></tr><tr><th>Corvus corone Bleda notata 1</th><td>France Nditam, Cameroon</td><td>MNHN, n°13-16 MNHN, n°2-13</td><td>AF386463 AF386474</td><td>AF094643 AF391203</td></tr><tr><th>Bleda syndactyla</th><td>“</td><td>MNHN, n°1-02</td><td>AF386466</td><td>AF391204</td></tr><tr><th>Ixonotus guttatus</th><td>Ebogo, Cameroon</td><td>MNHN, n°3-03</td><td>AF386470</td><td>AF391208</td></tr><tr><th>Baeopogon indicator</th><td>Ngambé, Cameroon</td><td>MNHN, n°2-49</td><td>AF386465</td><td>AF391205</td></tr><tr><th>Andropadus latirostris</th><td>“</td><td>MNHN, n°2-52</td><td>AF386467</td><td>AF096477</td></tr><tr><th>Andropadus virens</th><td>Nditam, Cameroon</td><td>MNHN, n°2-01</td><td>AF386477</td><td>AF391214</td></tr><tr><th>Phyllastrephus icterinus</th><td>Somalomo, Cameroon</td><td>MNHN, n°E-22</td><td>AF386469</td><td>AF391207</td></tr><tr><th>Phyllastrephus albigularis</th><td>Nditam, Cameroon</td><td>MNHN, n°1-42</td><td>AF386476</td><td>AF391213</td></tr><tr><th>Criniger chloronotus</th><td>Ituri, Zaire</td><td>FMNH, n°3774</td><td>AF386487</td><td>AF391224</td></tr><tr><th>Criniger ndussumensis</th><td>Mbouma, Cameroon</td><td>MNHN, n°3-10</td><td>AF386472</td><td>AF391210</td></tr><tr><th>Criniger calurus</th><td>Republic of Central Africa</td><td>AMNH, n°PB222</td><td>AF386483</td><td>AF391220</td></tr><tr><th>Criniger olivaceus</th><td>Liberia</td><td>AMNH, n°8275</td><td>AF386488</td><td>AF391225</td></tr><tr><th>Criniger phaeocephalus</th><td>Sabah, Borneo</td><td>ANSP, n°1058</td><td>AF386491</td><td>AF391228</td></tr><tr><th>Criniger bres</th><td>“</td><td>ANSP, n°1056</td><td>AF386490</td><td>AF391227</td></tr><tr><th>Criniger flaveolus</th><td>Umphang, Thailand</td><td>MNHN, n°4-5M</td><td>AF386478</td><td>AF391215</td></tr><tr><th>Criniger ochraceus</th><td>Khao Chong, Thailand</td><td>MNHN, n°1989-90</td><td>AF386482</td><td>AF391219</td></tr><tr><th>Criniger pallidus</th><td>Korat, Thailand</td><td>MNHN, n°4-4I</td><td>AF386471</td><td>AF391209</td></tr><tr><th>Hypsipetes criniger</th><td>Sabah, Borneo</td><td>ANSP, n°1179</td><td>AF386489</td><td>AF391226</td></tr><tr><th>Hypsipetes propinquus</th><td>Umphang, Thailand</td><td>MNHN, n°4-4D</td><td>AF386475</td><td>AF391212</td></tr><tr><th>Hypsipetes mcclellandii</th><td>“</td><td>MNHN, n°4-4H</td><td>AF386468</td><td>AF391206</td></tr><tr><th>Hypsipetes leucocephalus</th><td>Gaoligong Shan, Yunnan</td><td>MNHN, n°15-60</td><td>AF386481</td><td>AF391218</td></tr><tr><th>Hypsipetes phillipinus</th><td>Mindanao, Philippines</td><td>FMNH, n°6590</td><td>AF386486</td><td>AF391223</td></tr><tr><th>Pycnonotus finlaysoni</th><td>Umphang, Thailand</td><td>MNHN, n°4-3I</td><td>AF386473</td><td>AF391211</td></tr><tr><th>Pycnonotus atriceps</th><td>Korat, Thailand</td><td>MNHN, n°4-3C</td><td>AF386484</td><td>AF391221</td></tr><tr><th>Pycnonotus jocosus</th><td>Umphang, Thailand</td><td>MNHN, n°4-4B</td><td>AF386480</td><td>AF391217</td></tr><tr><th>Pycnonotus barbatus</th><td>Yaoundé, Cameroon</td><td>MNHN, n°2-21</td><td>AF386479</td><td>AF391216</td></tr><tr><th>Pycnonotus xanthorrhous</th><td>Gaoligong Shan, Yunnan</td><td>MNHN, n°14-19</td><td>AF386485</td><td>AF391222</td></tr></tbody></table>

opencc-by-4.0Feb 2024View details →

Fig. 2 in A tough nutlet to crack: Resolving the phylogeny of Thesium (Thesiaceae), the largest genus in Santalales

Fig. 2. Phylogenetic analysis of Thesium using nuclear ribosomal internal transcribed spacer (ITS) sequences. This tree, rooted with Osyridicarpos and Lacomucinaea (outgroups) gives Bayesian posterior probabilities at the nodes. Clades discussed in the text are numbered. Geographical sources for the sampled taxa are abbreviated as follows: AFN = Northern Africa, AFS = Southern Africa, AFT = Tropical Africa, ASC = Central Asia, ASE = Eastern Asia, ASN = Northern Asia, ASS = Southern Asia, ASW = Western Asia, AUS = Australia, CIS = Canary Islands, EUR = Europe, MAD = Madagascar, SAM = South America, and USA = United States of America.

opencc-by-4.0Feb 2024View details →

Fig. 1 in A tough nutlet to crack: Resolving the phylogeny of Thesium (Thesiaceae), the largest genus in Santalales

Fig. 1. Map showing the distribution of Thesium worldwide. Data from GBIF were vetted and used for generating the first iteration. Additional information was obtained from specimen records given in various Floras.

opencc-by-4.0Feb 2024View details →

Fig. 6 in A tough nutlet to crack: Resolving the phylogeny of Thesium (Thesiaceae), the largest genus in Santalales

Fig. 6. Photographs of representatives of the major clades of Thesium species. The numbers in the upper right corners correspond to clade numbers on the Bayesian tree (Fig. 2D). L.S = longitudinal section. A, Alatum clade, T. alatum, flowering shoots, stem details, fruits (Goetghebeur 4512, BR); B, Alatum clade, T. utile, habit, flowers, fruit L.S.; C, Davidsoniae clade, T. davidsoniae, habit, flower, fruits; D, Multiramulosum clade, T. multiramulosum, shoots with flowers and fruits; E, Virens clade, T. subsimile, habit, inflorescence, rehydrated and dissected flowers (Balkwill & Balkwill 11245, MO); F, Nigrum clade, T. magalismontanum, habit, flower, fruit L.S.; G, Lobelioides clade, T. lobelioides, herbarium specimen and rehydrated and dissected flowers (Brenan 14920, UPS); H, Goetzeanum clade, T. goetzeanum habit, flower L.S., inflorescence; I, Gracilarioides clade, T. gracilarioides, flowering shoots, flower, young fruits; J, Gracilarioides clade, T. polygaloides, herbarium specimen and rehydrated and dissected flowers (Hobson 442, MO); K, Costatum clade, T. asterias, flowering shoots, flower, flower L.S., and young fruits; L, Costatum clade, T. costatum, excavated plant, flower, fruit. — For photo credits, see suppl. Appendix S3.

opencc-by-4.0Oct 2022View details →

Fig. 3 in Unravelling the species diversity, phylogeny and biogeography of the mycoheterotrophic Voyrieae (Gentianaceae) and the description of a new species

Fig. 3. Time-calibrated multigene species phylogeny of Voyrieae. Node numbers represent Bayesian posterior probabilities. Colored squares before species names represent the current presence of species in the respective biogeographic areas. Colored squares on nodes represent the ancestral area reconstruction with the highest likelihood using the DEC model. Ma = million years ago. Pl. = Pliocene.

opencc-by-4.0Oct 2022View details →

Fig. 1. Species diversity within Voyrieae. A in Unravelling the species diversity, phylogeny and biogeography of the mycoheterotrophic Voyrieae (Gentianaceae) and the description of a new species

Fig. 1. Species diversity within Voyrieae. A, Voyria corymbosa; B, V. chionea; C, V. obconica; D, V. pittieri; E, V. spruceana; F, V. parasitica; G, V. aurantiaca; H, V. primuloides; I, V. clavata; J, V. caerulea. — All photos by Vincent Merckx, except H, by Steven Dessein.

opencc-by-4.0Aug 2001View details →

Fig. 8 in New Morphological Evidence for the Phylogeny of Artiodactyla, Cetacea, and Mesonychidae

Fig. 8. Strict consensus of 32 most parsimonious trees for the morphological data listed in appendix 3. Each most parsimonious tree is 1635 steps long (polymorphisms included as steps), has a consistency index of 0.31, and has a retention index of 0.60. Branchsupport values are immediately above and to the left of their respective nodes. Artiodactyla, Neoselenodontia, and Suiformes are monophyletic in all shortest trees. Taxon abbreviations: A, Artiodactyla; C, Cetacea; N, Neoselenodontia, P, Perissodactyla; R, Acreodi; U, Suiformes; X, Paraxonia.

dryad40/100

Phylogeny and floral character evolution of Mentzelia section Bicuspidaria (Loasaceae)

Mentzelia section Bicuspidaria (Loasaceae) is a monophyletic group of desert ephemerals that inhabit the complex, heterogeneous landscapes of the southwestern United States and northwestern Mexico. To investigate species circumscriptions and evolutionary relationships in Bicuspidaria, we employed phylogeny reconstructions based on DNA sequences from the plastid trnL-trnF, trnS-trnfM, ndhF-rpl32, and rpl32-trnL regions and the nuclear ribosomal ITS and ETS regions. Due to evidence of discordant relationships reconstructed from the plastid and nuclear partitions, we used coalescent-based methods in addition to concatenated data sets to estimate the species tree. Maximum likelihood reconstructions based on the combined plastid and nuclear data and coalescent-based reconstructions inferred congruent, fully-resolved species-level phylogenies of section Bicuspidaria. A monophyletic section Bicuspidaria was composed of two main clades, which corresponded to a clade of species endemic to the United States composed of M. reflexa, M. tricuspis, and M. tridentata that was sister to a clade of species at least partially distributed in Mexico, composed of M. hirsutissima and M. involucrata. Despite the unusual floral morphology of M. reflexa, molecular reconstructions placed M. reflexa sister to M. tridentata. All species of Bicuspidaria were monophyletic, except for M. hirsutissima, which was composed of two distinct lineages and paraphyletic with respect to M. involucrata. The northern clade of M. hirsutissima from California and Baja California was sister to M. involucrata, and both, in turn, were sister to a geographically disjunct southern clade of M. hirsutissima from Baja California Sur and Cedros Island. These phylogeny reconstructions provide evidence for the inclusion of five species in section Bicuspidaria and have uncovered cryptic diversity that has been largely unrecognized. Character state reconstructions based on the phylogeny of section Bicuspidaria suggest innovative and, at times, homoplasious floral evolution.

opencc-zeroJun 2021View details →

Fig. 14 in The family Epimetopidae (Coleoptera: Hydrophiloidea): review of current knowledge, genus-level phylogeny, and taxonomic revision of Eupotemus

Fig. 14. Habitus photographs of the known species of Eumetopus Balfour-Browne, 1949. A – E. acutimontis Ji & Jäch, 1998, paratype from China: Hainan (NHMW); B – E. asperatus (Champion, 1919), specimen from Nepal: Koshi Valley (NMPC); C – E. bullatus (Sharp, 1875), specimen from India: Maharashtra, Sawantwadi (NMPC); D – E. flavidulus (Sharp, 1890), specimen from India: Meghalaya, Bagmara (NHMW); E – E. maindroni (Régimbart, 1903), specimen from India: Maharashtra, Sawantwadi (NHMW); F – E. schuelkei Jäch, 2002, paratype from central Laos; G – E. tibialis Ji & Jäch, 1998 from Thailand, Ban Na env. (NMPC); H – E. weigeli Skale & Jäch, 2003, holotype from Nepal (NHMW). Scale bars: 1 mm.

Fig. 11 in The family Epimetopidae (Coleoptera: Hydrophiloidea): review of current knowledge, genus-level phylogeny, and taxonomic revision of Eupotemus

Fig. 11. Male genitalia of the Eupotemus carinaticollis species group, holotypes. A–C – E. carinaticollis (Basilewsky, 1956); D–F – E. taianus sp. nov.; G–I – E. uluguru sp. nov. A, D, G – dorsal view; B, E, H – lateral view; C, F, I – ventral view.

Fig. 10 in The family Epimetopidae (Coleoptera: Hydrophiloidea): review of current knowledge, genus-level phylogeny, and taxonomic revision of Eupotemus

Fig. 10. Habitus photographs of the species of the Eupotemus limicola species group, holotypes (A–F) and differences between species groups in pronotal morphology (G–H). A–C – E. smithi sp. nov.; D–F – E. ophioglossus sp. nov.; G–I – pronotal sculpture: G – E. carinaticollis species group; H – E. limicola species group.

Fig. 7 in The family Epimetopidae (Coleoptera: Hydrophiloidea): review of current knowledge, genus-level phylogeny, and taxonomic revision of Eupotemus

Fig. 7. Biology of Epimetopidae. A–D – Eumetopus acutimontis Ji & Jäch, 1998 in Vietnam, Khánh Hòa Prov., Ba Ho Waterfalls National Park, 12°23.131′N 109°08.052′E: A–B – alive specimens on wet sandy shores; C – specimen buried in wet sand; D – general view of the locality. E–F – locality of Epimetopus surinamensis Perkins, 2012 in Suriname: Sipaliwini, Wehepai, 2°21.776′N 56°41.861′W (SR10-0904-01A) (E – general view; F – detail of sandy banks from which specimens were collected). G–H – locality of Epimetopus simplex Perkins, 1979 in Venezuela, Guarico, Rio San Antonio, 9°46.32′N 67°21.177′W (VZ09-0108-02A) (G – detail of gravelly shore show which specimens were collected; H – general view). I–J – marshy roadside ditch with Epimetopus venezuelensis Perkins, 2012 in Venezuela, Apure, ca. 1 km N Rio Claro, 7°10.162′N 67°38.69′W (AS-06-009). (I – general view; J – detail of the microhabitat). Photos by A. Sazhnev (A–C), A. Prokin (D), A. Short (E–J).

Fig. 16 in The family Epimetopidae (Coleoptera: Hydrophiloidea): review of current knowledge, genus-level phylogeny, and taxonomic revision of Eupotemus

Fig. 16. Photographs of Epimetopus species, including two specimens of questionable provenance (E–G). A – E. flavicaptus Fikáček, Barclay & Perkins, 2011; B – E. deceptus Perkins, 2012; C – E. tridens Perkins, 2012; D – E. hintoni Balfour-Browne, 1949; E – Epimetopus sp. (ʻZambiaʼ); F–G – E. cf. burruyacu Oliva, 1986 (ʻSaudi Arabiaʼ) (F – dorsal view; G – aedeagus). Scale bars for A–F = 0.5 mm. A–D adopted from Pൾ*©κංඇඌ (2012).

Fig. 13 in The family Epimetopidae (Coleoptera: Hydrophiloidea): review of current knowledge, genus-level phylogeny, and taxonomic revision of Eupotemus

Fig. 13. Known distribution of Eupotemus species. A – species of E. limicola species group; B – species of E. carinaticollis species group.