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1,293
datasets available to search
ShareScore release 0.9.0
Dataset results
1,293 results for “gene sequencing”
RNA Sequencing facilitates quantitative Analysis of differently expressed genes with negative control (NC) and siLINK-A treatment in rheumatoid fibroblast-like synoviocytes [RNA-seq]
GEO Series GSE181615. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Next Generation Sequencing Quantitative Analysis of altered expression of genes in CBX4 overexpressing gastric cancer cells
GEO Series GSE255085. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Bisulfite-free base-resolution sequencing of oxidized cytosines (APOBEC-seq) reveals a ubiquitous role of thymine DNA glycosylase in active gene promoters and an interaction with MBD3/NuRD [human ChIP
GEO Series GSE228704. Homo sapiens. 19 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Bisulfite-free base-resolution sequencing of oxidized cytosines (APOBEC-seq) reveals a ubiquitous role of thymine DNA glycosylase in active gene promoters and an interaction with MBD3/NuRD [human APOB
GEO Series GSE228703. Homo sapiens. 6 samples. Type: Methylation profiling by high throughput sequencing.
RNA sequencing of the silenced gene CYTH4 in acute myeloid leukemia cell lines
GEO Series GSE294040. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
RNA-sequencing analysis of Nrf2 target genes in rat pulmonary arterial smooth muscle cells and endothelial cells
GEO Series GSE229206. Rattus norvegicus. 12 samples. Type: Expression profiling by high throughput sequencing.
Bisulfite-free base-resolution sequencing of oxidized cytosines (APOBEC-seq) reveals a ubiquitous role of thymine DNA glycosylase in active gene promoters and an interaction with MBD3/NuRD
GEO Series GSE228707. Mus musculus; Homo sapiens. 55 samples. Type: Methylation profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Nascent RNA sequencing reveals a dynamic global transcriptional response at genes and enhancers to the natural medicinal compound celastrol
GEO Series GSE96869. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing; Other.
Nuclear Argonaute:miRNA complexes recognize target sequences within chromatin and silence gene expression
GEO Series GSE297116. Homo sapiens. 16 samples. Type: Expression profiling by high throughput sequencing.
RNA sequencing identifies gene expression profile changes associated with CREB3L1 gene silencing by transcriptional interference in HuCCT1 cells
GEO Series GSE194088. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
RNA Sequencing Analysis of Gene Expression Profiles in Cic-null B-1a and Follicular B (Fo B) cells
GEO Series GSE163455. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
Transcriptome sequencing of differentially expressed genes in mouse and human skin with and without NCSTN mutation
GEO Series GSE115101. Homo sapiens; Mus musculus. 16 samples. Type: Expression profiling by high throughput sequencing.
Optimizing Cost-Effective Gene Expression Phenotyping Approaches in Cattle Using 3′ mRNA Sequencing
GEO Series GSE272596. Bos taurus. 54 samples. Type: Expression profiling by high throughput sequencing.
Next Generation Sequencing Facilitates Quantitative Analysis of U87 Transcriptomes to define the ALKBH5-dependent hypoxia-induced genes
GEO Series GSE171227. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing.
RNA-sequencing analysis of differential expressed genes in TGFβ-treated HK-2 cells after HDAC11 inhibition
GEO Series GSE280100. Homo sapiens. 15 samples. Type: Expression profiling by high throughput sequencing.
RNA sequencing analysis Reveal Post-Stroke Cognitive Impairment related genes in Hippocampus of Cerebral Ischemic Rat
GEO Series GSE160290. Hippocampus. 6 samples. Type: Expression profiling by high throughput sequencing.
16S rRNA Gene Sequencing Analysis of the Gut Microbiota of ten Mulberry Silkworms Fed with Mulberry Leaves (SY), ten Artificial Diet (SL), and tem Reverted from Artificial Diet to Mulberry Leaves (ZS)
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Sequences and secondary structures of mutated pre-miRNAs from CRISPR/Cas9-edited MIR160a, MIR160b and MIR390a genes of potato
<p><strong>Genotypisation of transfected protoplasts</strong> (folder<strong> “Transfected protoplasts”</strong>)</p> <p>Genomic DNA isolated from transfected and non-transfected protoplast of cv. Desiree was used as a template to amplify approximately 800 bp-long region surrounding coding sequence for miR160a-5p, miR160b-5p and miR390a-5p, encoded by <em>MIR160a</em>, <em>MIR160b</em> and <em>MIR390a</em> genes, respectively. To determine types of mutations and polymorphism, PCR products were cloned into pJET, transformed into <em>E. coli</em>, isolated from 9 or 10 colonies per PCR product and Sanger sequenced with primers specific for amplicons from both directions.</p> <p><strong>Genotypisation of transgenic lines</strong> (folder<strong> “Transgenic potato”</strong>)</p> <p>Approximately 800 bp-long region surrounding coding sequence for each miRNA was amplified from genomic DNA isolated from CRISPR-edited <em>MIR160a</em> (cr-<em>MIR160a</em>), <em>MIR160b </em>(cr-<em>MIR160b</em>) and <em>MIR390a</em> (cr-<em>MIR390a</em>) transgenic and non-transgenic plants (NT; cv. Rywal and cv. Desiree). For the screening of transgenic lines with desired mutations, PCR products were Sanger sequenced (subfolder <strong>“PCR amplicons miRNA”</strong>). To determine types of mutations and polymorphism, PCR products were for the selected transgenic lines and NT plants cloned into pJET, transformed into E. coli, isolated from 9 or 10 colonies per PCR product and Sanger sequenced with primers specific for amplicons from both directions (subfolder <strong>“pJET_miRNA”</strong>).</p> <p><strong>Secondary structures of pre-miRNA precursors</strong> (folder <strong>“Secondary structures”</strong>)</p> <p>Precursor sequences of wild-type potato <em>MIR160a</em> and <em>MIR160b</em> were obtained from miRBase (https://www.mirbase.org/; Accession No. MI0025955, MI0025956) and of wild-type potato <em>MIR390a</em> from the study of Križnik <em>et al.</em>, 2017 (Križnik <em>et al.</em>, 2017) (subfolder <strong>“</strong><strong>WT pre-miRNAs</strong><strong>“</strong>). The mutated pre-miRNAs of cr-<em>MIR160a</em>, cr-<em>MIR160b</em> and cr-<em>MIR390a</em> transgenic lines were extracted from Sanger sequencing results (subfolder <strong>“pJET_miRNA”</strong>). The secondary structures were drawn and miRNA/miRNA* duplex regions were highlighted (orange – 5p miRNA coding region, blue – 3p miRNA coding region) using RNA Folding/Annotation tool of The Small RNA Workbench v4.5 (Stocks <em>et al.</em>, 2018) (subfolders <strong>“Desiree” </strong>and<strong> “Rywal”</strong>).</p>
Supplementary phylogenetic trees of Babesia bigemina based on partial sequences of both genes Rap-1a and gp45, with SH-aLRT support values (%), aBayes support, and ultrafast bootstrap support (%).
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Supplementary phylogenetic trees of Babesia bigemina based on partial sequences of both genes Rap-1a and gp45, with SH-aLRT support values (%), aBayes support, and ultrafast bootstrap support (%).
Open the record for dataset details and reuse information.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.