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Supplemental files for: "Towards a better future for DNA barcoding..."
<p>v2 change: updated supplemental file 6 with additional information</p>
FIGURE 10 in DNA barcode based phylogeographic analysis of the Aricia anteros (Freyer, 1838) species complex (Lepidoptera: Lycaenidae) with description of a new subspecies from SE Europe
FIGURE 10. Aricia anteros kalmius ssp. nov., butterflies of the second generation in nature. A, male, near Orlovskoe village, 1 August 2023. B, male, near Orlovskoe village, 1 August 2023. C, female, near Orlovskoe village, 1 August 2023. Photo: R. Botman.
FIGURE 9 in DNA barcode based phylogeographic analysis of the Aricia anteros (Freyer, 1838) species complex (Lepidoptera: Lycaenidae) with description of a new subspecies from SE Europe
FIGURE 9. Aricia anteros kalmius ssp. nov., butterflies of the first generation in nature. A, male, near Pyshchevyk village,11 May 2008. B, male, near Orlovskoe village, 15 May 2021. C, female on Sedum sp., near Pyshchevyk village, 01 June 2006. Photo: R. Botman.
FIGURE 8 in DNA barcode based phylogeographic analysis of the Aricia anteros (Freyer, 1838) species complex (Lepidoptera: Lycaenidae) with description of a new subspecies from SE Europe
FIGURE 8. The host plant of A. anteros kalmius ssp. nov. Beketov's storksbill (Erodium beketowii Schmalh). 5 May 2020. Photo: R. Botman.
FIGURE 6 in DNA barcode based phylogeographic analysis of the Aricia anteros (Freyer, 1838) species complex (Lepidoptera: Lycaenidae) with description of a new subspecies from SE Europe
FIGURE 6. Male genitalia of A. anteros kalmius ssp. nov. (specimen VL629 is shown). A Lateral view. B. Right valve, internal view and left valve, dorsal view. C. Uncus and branches of the gnathos, dorsal view.
FIGURE 5 in DNA barcode based phylogeographic analysis of the Aricia anteros (Freyer, 1838) species complex (Lepidoptera: Lycaenidae) with description of a new subspecies from SE Europe
FIGURE 5. Species of the subgenus Aricia (Ultraaricia). Males. A–B, A. anreros dombaiensis, Georgia, Tiliabuli Mt, 2150–2500 m, 41.53861°N, 43.62806°E, 29 June 2013, V.Lukhtanov leg. C–D, Lectotype of A. crassipuncta, [Turkey], Kasikoporan, 01 July 1883, [Chr]istoph leg. E–F, A. bassoni, Israel, Anti-Lebanon Mts Range, Hermon Mt, 33.285°N, 35.7619°E, 1400–1450m, 2 May 2016. G–H, A. vandarbani, Azerbaijan, Talysh Mts, Lerik, 1000 m, 38.78°N, 48.43°E, 27 July 2003, V. Lukhtanov leg. Scale = 2 cm.
FIGURE 4. Aricia anteros kalmius ssp. nov. A–B in DNA barcode based phylogeographic analysis of the Aricia anteros (Freyer, 1838) species complex (Lepidoptera: Lycaenidae) with description of a new subspecies from SE Europe
FIGURE 4. Aricia anteros kalmius ssp. nov. A–B, Holotype, VL626, ♂, Donetsk Region, Orlovskoe, 47.260°N, 37.743°E, 01 Aug 2023 R.V.Botman. C–D, VL628, Paratype, ♂, Donetsk Region, Orlovskoe, 47.260°N, 37.743°E, 01 Aug 2023 R.V.Botman. E–F, Paratype, ♀, Donetsk Region, Orlovskoe, 47.260°N, 37.743°E, 01 Aug 2023 R.V.Botman. G–H, ♂, Donetsk Region, Mariupol district, 117 km SSE from the centre of Donetsk, left bank of the Kalmius river, Pyshchevyk vill. 47.242°N, 37.794°E, 16 June 2010, R. Botman leg. I–J, ♀, Donetsk Region, Mariupol district, 117 km SSE from the centre of Donetsk, left bank of the Kalmius river, Pyshchevyk vill. 47.242°N, 37.794°E, 16 June 2010, R. Botman leg. Scale = 2 cm.
FIGURE 2 in DNA barcode based phylogeographic analysis of the Aricia anteros (Freyer, 1838) species complex (Lepidoptera: Lycaenidae) with description of a new subspecies from SE Europe
FIGURE 2. The TCS haplotype network of the samples of the A. anteros species complex. Circles are proportional to sample size for each haplotype. Smallest black dots represent unsampled but predicted haplotypes, and mutations are shown as dashes. The species and subspecies clusters are highlighted in different colors. The first three letters of a species or subspecies name are used to designate the haplogroups Ant, Bas, Cra, Dom, Kal, Var, and Van.
FIGURE 3. A in DNA barcode based phylogeographic analysis of the Aricia anteros (Freyer, 1838) species complex (Lepidoptera: Lycaenidae) with description of a new subspecies from SE Europe
FIGURE 3. A map that schematically shows the distribution of taxa included in the A. anteros species complex. The map is based on the work of Hesselbarth et al. (1995), ten Hagen & Schurian (2009) and original data.
FIGURE 1 in DNA barcode based phylogeographic analysis of the Aricia anteros (Freyer, 1838) species complex (Lepidoptera: Lycaenidae) with description of a new subspecies from SE Europe
FIGURE 1. The Bayesian tree of the Aricia anteros species complex based on analysis of the mitochondrial COI barcodes. Numbers at nodes indicate Bayesian posterior probabilities (BPP) (higher than 0.5). The number after the name of the haplotype means the number of identified specimens with this haplotype. The species and subspecies clusters are highlighted in different colors. V is Aricia vandarbani. 1, 2, 3 and 4 are the major clades (see the text).
FIGURE 4 in Confirming the occurrence of two fiddler crabs, Tubuca dussumieri (H. Milne Edwards, 1852) and T. coarctata (H. Milne Edwards, 1852) (Crustacea: Decapoda: Ocypodidae), in Hong Kong by DNA barcoding and morphology
FIGURE 4. Male specimen (A, B) of Tubuca coarctata (H. Milne Edwards, 1852) (19.5 × 11.9 mm; NCHUZOOL 17189); male (C, D) (21.9 × 13.5 mm; NCHUZOOL 17191) and female specimens (E, F) (21.6 × 14.2 mm; NCHUZOOL 17190) of T. dussumieri (H. Milne Edwards, 1852). (A, C, E) dorsal view; (B, D, F) ventral view. Scale bar = 10 mm.
FIGURE 1 in Confirming the occurrence of two fiddler crabs, Tubuca dussumieri (H. Milne Edwards, 1852) and T. coarctata (H. Milne Edwards, 1852) (Crustacea: Decapoda: Ocypodidae), in Hong Kong by DNA barcoding and morphology
FIGURE 1. Known distribution in East Asia of (A) Tubuca coarctata (H. Milne Edwards, 1852), and (B) T. dussumieri (H. Milne Edwards, 1852). (Chestoprud et al. 2012; Shih et al. 2015, 2016a; Le et al. 2018, 2020). The blue and orange circles represent dubious records of T. coarctata and T. dussumieri, respectively (see Shih et al. 2010).
FIGURE 5 in Confirming the occurrence of two fiddler crabs, Tubuca dussumieri (H. Milne Edwards, 1852) and T. coarctata (H. Milne Edwards, 1852) (Crustacea: Decapoda: Ocypodidae), in Hong Kong by DNA barcoding and morphology
FIGURE 5. Tubuca coarctata (H. Milne Edwards, 1852), male (19.5 × 11.9 mm), NCHUZOOL 17189, Tai Tam Bay, Hong Kong, NCHUZOOL 17189: (A) carapace; (B) major cheliped; (C) right G1 mesial view; (D) right G1 mesial view of distal part; (E) right G1 lateral view; (F) right G1 lateral view of distal part.
FIGURE 3 in Confirming the occurrence of two fiddler crabs, Tubuca dussumieri (H. Milne Edwards, 1852) and T. coarctata (H. Milne Edwards, 1852) (Crustacea: Decapoda: Ocypodidae), in Hong Kong by DNA barcoding and morphology
FIGURE 3. Color in life, Tai Tam Bay, Hong Kong SAR: (A, B) male Tubuca coarctata (H. Milne Edwards, 1852), NCHUZOOL 17189; (C–E) male and (F–H) female T. dussumieri (H. Milne Edwards, 1852). Specimens not collected.
FIGURE 2 in Confirming the occurrence of two fiddler crabs, Tubuca dussumieri (H. Milne Edwards, 1852) and T. coarctata (H. Milne Edwards, 1852) (Crustacea: Decapoda: Ocypodidae), in Hong Kong by DNA barcoding and morphology
FIGURE 2. Sampling locations in Hong Kong SAR, China (A, B). A satellite photo of Tai Tam Bay is shown in (C), and photos of the sampling site are in (D) and (E). The yellow star represents Hong Kong SAR in (A) and the sampling area in (B).
FIGURE 6 in Confirming the occurrence of two fiddler crabs, Tubuca dussumieri (H. Milne Edwards, 1852) and T. coarctata (H. Milne Edwards, 1852) (Crustacea: Decapoda: Ocypodidae), in Hong Kong by DNA barcoding and morphology
FIGURE 6. Tubuca dussumieri (H. Milne Edwards, 1852), male (21.9 × 13.5 mm), Tai Tam Bay, Hong Kong, NCHUZOOL 17191: (A) Carapace; (B) major cheliped; (C) right G1 mesial view; (D) right G1 mesial view of distal part; (E) right G1 lateral view; (F) right G1 lateral view of distal part.
FIGURE 11 in Morphological description and DNA barcoding of Diamesa achipseensis sp. nov. (Diptera: Chironomidae: Diamesinae) from Southwestern Caucasus
FIGURE 11. Locality and habitat of Diamesa achipseensis sp. nov. on Achipse River of the Southwestern Caucasus (Photo by D.M. Palatov).
FIGURES 1–10 in Morphological description and DNA barcoding of Diamesa achipseensis sp. nov. (Diptera: Chironomidae: Diamesinae) from Southwestern Caucasus
FIGURES 1–10. Adult male of Diamesa achipseensis sp. nov. 1–2, part of hypopygium in dorsal view with invisible bent gonostylus; 3, part of tergite IX in ventral view with anal point; 4, dorsally curved gonostylus; 5, part of hypopygium from ventral side; 6, endoskeleton; 7, gonostylus; 8, transverse sternapodeme; 9–10, superior volsellae. Scale bar: 50 μm.
Fig. 8 in Incidence of louse flies on birds from the Russian Far East (Diptera: Hippoboscidae) and investigation of the status of some taxa by DNA barcoding
Fig. 8. Mites (circles) and mite eggs on abdomen of female Ornithomya avicularia, ventral view. Рис. 8. КлеЩи (окружности) и их Яйца на брюШке самки Ornithomya avicularia, сниЗу.
Fig. 1 in Incidence of louse flies on birds from the Russian Far East (Diptera: Hippoboscidae) and investigation of the status of some taxa by DNA barcoding
Fig. 1. Location of Muraviovka Park (arrow) within the Oblast Amur (dark grey). Рис. 1. Расположение парка Муравьёвка (стрелка) в Амур- ской области (темно-сераЯ Заливка).
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.