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2,620 results for “Molecular Phylogeny”
Figure 1 in Morphology and molecular phylogeny of a Chinese population of Rubrioxytricha guamensis Kumar et al., 2018 (Ciliophora: Hypotrichia)
Figure 1. (A–R) Morphology of Chinese population of Rubrioxytricha guamensis from life (A, D–L) and after protargol staining (B, C, M–R). (A) Ventral view of a representative individual. (B, C) Ventral (B) and dorsal (C) view of the same specimen showing the ciliary pattern and nuclear apparatus, arrowhead shows buccal cirrus. (D) Distribution of cortical granules (arrowheads). (E) Shows flexibility of the body; arrowheads represent the spherical yellow cortical granules at the body margin. (F) Ventral view of anterior cell part. (G) Posterior cell part, arrow shows the slightly enlarged transverse cirri. (H) Various cytoplasmic inclusions, ie crystals, lipid droplets. (I) Mid-portion of a slightly squeezed cell, arrows show two macronuclear nodules. (J) Arrow marks the contractile vacuole. (K, L) Ventral views of different cells, showing body shape. (M, N) Ventral (M) and dorsal (N) view of the same specimen, showing ciliature and nuclear apparatus. (O) Ventral view of the anterior end of body. (P) Ventral view of the mid-portion of body, showing left and right marginal rows and postoral ventral cirri. (Q) Ventral view of the posterior portion of cell. (R) Dorsal view of the posterior end of cell, showing caudal cirrus. AZM, adoral zone of membranelles; CC, caudal cirrus; E, endoral membrane; FC, frontal cirri; FVC, frontoventral cirri; LMR, left marginal row; Ma, macronuclear nodules; P, paroral membrane; PTVC, pretransverse ventral cirri; PVC, postoral ventral cirri; RMR, right marginal row; TC, transverse cirri; 1–4, dorsal kineties 1–4. Scale bars = 30 µm.
Fig. 3 in Time-calibrated molecular phylogeny reveals a Miocene-Pliocene diversification in the Amazon miniature killifish genus Fluviphylax (Cyprinodontiformes: Cyprinodontoidei)
Fig. 3 Time-calibrated phylogeny of the Cyprinodontoidei and Fluviphylax obtained from the Bayesian dating analysis in Beast v.1.8. Bars represent maximum and minimum date estimates for each node, and the numbers are node divergence mean ages. Arrows indicate the nodes
Fig. 1 in Time-calibrated molecular phylogeny reveals a Miocene-Pliocene diversification in the Amazon miniature killifish genus Fluviphylax (Cyprinodontiformes: Cyprinodontoidei)
Fig. 1 Distribution map of Fluviphylax: F. obscurus (white dot), F. palikur (orange dot), F. pygmaeus (yellow dot), F. simplex (blue dot), F. zonatus (red dot), Fluviphylax sp. A (green dot), Fluviphylax sp. B (brown dot), and Fluviphylax sp. C (purple dot)
Fig. 2 Phylogenetic relationships among 30 in Time-calibrated molecular phylogeny reveals a Miocene-Pliocene diversification in the Amazon miniature killifish genus Fluviphylax (Cyprinodontiformes: Cyprinodontoidei)
Fig. 2 Phylogenetic relationships among 30 species of Cyprinodontoidei, including all nominal species of Fluviphylax and three undescribed species, inferred by using partial sequences of the nuclear-encoded genes GLYT1, ENC1, RAG1, MYH6, and SREB2 and the mitochondrial gene COI, total of 5880 bp. Numbers left to the bar indicate posterior
FIGURE 7 in Delimitation of taxa in Amauroderma (Ganodermataceae, Polyporales) based in morphology and molecular phylogeny of Brazilian specimens
FIGURE 7. Amauroderma laccatostipitatum (URM 83238). A. Basidioma. B. Hymenial surface. C. Basidiospores in KOH. D. Basidiospores in SEM. Scale: A–B = 1 cm; C = 10 μm; D = 2 μm. Photos: A.C. Gomes-Silva.
FIGURE 4. Amauroderma brasiliense. A in Delimitation of taxa in Amauroderma (Ganodermataceae, Polyporales) based in morphology and molecular phylogeny of Brazilian specimens
FIGURE 4. Amauroderma brasiliense. A. Basidiomata (INPA 101986). B. Fresh basidioma (URM 83578). C. Dried basidioma (URM 83578). D. Context and tubes (URM 83578). E. Pores (URM 83578). F. Basidiospores in Melzer's reagent (INPA 101986). G. Basidiospores in SEM (INPA 101986). Scale: A–C = 1 cm; D = 2 mm; E, G = 2.5 μm; F = 5 μm. Photos: A.C. Gomes-Silva.
FIGURE 1 in Delimitation of taxa in Amauroderma (Ganodermataceae, Polyporales) based in morphology and molecular phylogeny of Brazilian specimens
FIGURE 1. Phylogenetic reconstruction of the Amauroderma based on alignment of 567 nucleotides of the ITS regions. Bootstrap values (%) were generated from maximum parsimony (MP) and maximum likelihood (ML) analysis and posterior probabilities (PP) from Bayesian algorithm (BA), respectively. Clade stabilities were calculated from MP (≥50 %), ML (≥50 %) and BA (≥0.70). For maximum parsimony: Consistency Index (CI) = 0.4355 and Retention Index (RI) = 0.7658. Species in bold type were sequenced in this study. Figure: N.C. de Lima-Júnior.
FIGURE 3 in Delimitation of taxa in Amauroderma (Ganodermataceae, Polyporales) based in morphology and molecular phylogeny of Brazilian specimens
FIGURE 3. Amauroderma albostipitatum (URM 83242). A. Abhymenial surface. B. Hymenial surface. C. Basidiospores in KOH. D. Basidiospores in Melzer's reagent. Scale: A–B = 1 cm; C, D = 10 μm. Photos: A.C. Gomes-Silva.
FIGURE 6 in Delimitation of taxa in Amauroderma (Ganodermataceae, Polyporales) based in morphology and molecular phylogeny of Brazilian specimens
FIGURE 6. Amauroderma floriformum (URM 83250) A. Basidioma. B. Basidiospores in Melzer's reagent. C, D. Basidiospores in KOH. Scale: A = 1 cm; B–D = 10 μm. Photos: T.B. Gibertoni.
FIGURE 10. Amauroderma schomburgkii. A in Delimitation of taxa in Amauroderma (Ganodermataceae, Polyporales) based in morphology and molecular phylogeny of Brazilian specimens
FIGURE 10. Amauroderma schomburgkii. A (URM 83228), D (URM 84228). Basidiomata. B (URM 83228), C (URM 83228), E (URM 84228). Hymenial surface. Scale: A = 0.5 cm; B = 1 mm; C, E = 0.1 mm; D = 1 cm. Photos: R.F.R. Melo.
FIGURE 5. Amauroderma corneri. A in Delimitation of taxa in Amauroderma (Ganodermataceae, Polyporales) based in morphology and molecular phylogeny of Brazilian specimens
FIGURE 5. Amauroderma corneri. A. Abhymenial surface (SP 212007). B. Hymenial surface (SP 212007). C. Context and tubes (SP 212007). D. Pores (SP 212007). E. Basidiospores in SEM (SP 213543). Scale: A, B = 2.5 cm; C = 3 mm; D = 2.5 μm; E = 7.5 μm. Photos: A.C. Gomes-Silva.
FIGURE 9. Amauroderma partitum. A in Delimitation of taxa in Amauroderma (Ganodermataceae, Polyporales) based in morphology and molecular phylogeny of Brazilian specimens
FIGURE 9. Amauroderma partitum. A (URM 83233), C (URM 82882), D (URM 82884). Basidiomata. B (URM 83233), E (URM 82882). Hymenial surface. F. Pores with hyphal pegs (URM 82884). Scale: A = 1 cm; B, E, F = 1 mm; C = 0.5 cm; D = 0.25 cm. Photos: R.F.R. Melo.
FIGURE 2 in Delimitation of taxa in Amauroderma (Ganodermataceae, Polyporales) based in morphology and molecular phylogeny of Brazilian specimens
FIGURE 2. Phylogenetic reconstruction of the Amauroderma based on alignment of 819 nucleotides of the LSU region. Bootstrap values (%) were generated from maximum parsimony (MP) and maximum likelihood (ML) analysis and posterior probabilities (PP) from Bayesian algorithm (BA), respectively. Clade stabilities were calculated from MP (≥50 %), ML (≥50 %) and BA (≥0.70). For maximum parsimony: Consistency Index (CI) = 0.7561 and Retention Index (RI) = 0.8601. Species in bold type were sequenced in this study. Figure: N.C. de Lima-Júnior.
FIGURE 12 in Delimitation of taxa in Amauroderma (Ganodermataceae, Polyporales) based in morphology and molecular phylogeny of Brazilian specimens
FIGURE 12. Amauroderma subsessile (URM 83239). A. Abhymenial surface. B. Hymenial surface. C. Basidiospores in Melzer's reagent. D. Basidiospores in SEM. Scale: A–B = 1 cm; C–E = 10 μm. Photos: A.C. Gomes-Silva.
FIGURE 8 in Delimitation of taxa in Amauroderma (Ganodermataceae, Polyporales) based in morphology and molecular phylogeny of Brazilian specimens
FIGURE 8. Amauroderma ovisporum (URM 83240). A. Basidioma. B. Hymenial surface. C. Basidiospores in KOH. D. Basidiospores in SEM. Scale: A, B = 1 cm; C = 5 μm; D = 2 μm. Photos: A.C. Gomes-Silva.
FIGURE 11 in Delimitation of taxa in Amauroderma (Ganodermataceae, Polyporales) based in morphology and molecular phylogeny of Brazilian specimens
FIGURE 11. Amauroderma sessile (INPA 103576). A. Basidioma. B. Hymenial surface. C. Basidiospores in KOH. Scale: A, C = 1 cm; B = 10 μm. Photos: A.C. Gomes-Silva.
FIGURE 2 in A new species of Maytenus (Celastraceae) from the Brazilian Atlantic Forest, with evidence of molecular phylogeny, and two new synonyms for Maytenus floribunda
FIGURE 2. Maximum-likelihood tree (GTRGAMMA model) with bootstrap support percentages (only ≥ 50% are shown) above branches or at left.
FIGURE 1 in A new species of Maytenus (Celastraceae) from the Brazilian Atlantic Forest, with evidence of molecular phylogeny, and two new synonyms for Maytenus floribunda
FIGURE 1. The strict consensus from three trees based on the nrITS and matK (792 steps, CI = 0.44 and RI = 0.58) for 22 taxa analysed by maximum parsimony, with bootstrap support percentages (only ≥ 50% are shown) above branches.
FIGURE 3 in A new species of Maytenus (Celastraceae) from the Brazilian Atlantic Forest, with evidence of molecular phylogeny, and two new synonyms for Maytenus floribunda
FIGURE 3. Maytenus nemorosa. Habit, with an opened fruit exposing one seed and aril [Rossini et al. 466 (HRCB)].
FIGURE 5 in Taxonomy of the tribe Apieae (Apiaceae) revisited as revealed by molecular phylogenies and morphological characters
FIGURE 5. Reconstruction of the eight selected morphological characters on the majority consensus tree obtained from the Bayesian analysis of the ITS matrix. Only clades belonging to tribe Apieae, and one terminal per species are displayed. A. Life form; B. Leaf blade shape; C. Presence and persistence of bracts; D. Presence and persistence of bracteoles; E. Flower colour; F. Mericarp indumentum; G. Mericarps dorsal ribs morphology; H. Mericarps marginal ribs morphology. Legend for G is as follow: a, ribs keeled; b, ribs narrowly winged; c, ribs not prominent but visible as lines; d, ribs inconspicuous. At the right, accepted taxa names are showed in regular italics.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.