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1,598 results for “genetic diversity”
Fig. 1 in Genetic diversity and population structure of endangered Neofinetia falcata (Orchidaceae) in South Korea based on microsatellite analysis
Fig. 1. Geographic distribution of N. falcata populations. Abbreviations are shown in Table 1. Pie charts represent assignment probability of belonging to each K = 2 clusters identified by STRUCTURE based on microsatellite allele frequencies, with probability values normalized using CLUMPP.
FIGURE 2 in Diversity of Tropidurus (Squamata: Tropiduridae) in Paraguay-an integrative taxonomic approach based on morphological and molecular genetic evidence
FIGURE 2. Distribution of species of the Tropidurus spinulosus group in Paraguay.
FIGURE 1 in Diversity of Tropidurus (Squamata: Tropiduridae) in Paraguay-an integrative taxonomic approach based on morphological and molecular genetic evidence
FIGURE 1. Distribution of species of the Tropidurus torquatus group in Paraguay.
Figure 5 from: Liu D, Zhou Y, Yang K, Zhang X, Chen Y, Li C, Li H, Song Z (2018) Low genetic diversity in broodstocks of endangered Chinese sucker, Myxocyprinus asiaticus: implications for artificial propagation and conservation. ZooKeys 792: 117-132. https://doi.org/10.3897/zookeys.792.23785
Figure 5 Neighbor-joining trees of individuals in three Myxocyprinusasiaticus broodstocks based on mtDNA control region.
Figure 1 from: Liu D, Zhou Y, Yang K, Zhang X, Chen Y, Li C, Li H, Song Z (2018) Low genetic diversity in broodstocks of endangered Chinese sucker, Myxocyprinus asiaticus: implications for artificial propagation and conservation. ZooKeys 792: 117-132. https://doi.org/10.3897/zookeys.792.23785
Figure 1 Map of sampling sites for the three Myxocyprinusasiaticus broodstocks. Key: black triangle Pixian Base of Sichuan Fisheries Research Institute, China (PBS); black star Yinbin Base of Sichuan Fisheries Research Institute, China (YBS); black square Yibin Rare Aquatic Animal Research Institute, China (YRA); broken circle river range where the wild broodstocks source of YBS; broken rectangle river range where the wild broodstocks source of YRA.
Figure 3 from: Liu D, Zhou Y, Yang K, Zhang X, Chen Y, Li C, Li H, Song Z (2018) Low genetic diversity in broodstocks of endangered Chinese sucker, Myxocyprinus asiaticus: implications for artificial propagation and conservation. ZooKeys 792: 117-132. https://doi.org/10.3897/zookeys.792.23785
Figure 3 Median-joining network of the mtDNA control region haplotypes of Myxocyprinusasiaticus. The size of each circle indicates the frequency of the corresponding haplotype in the whole data set.
Figure 2 from: Liu D, Zhou Y, Yang K, Zhang X, Chen Y, Li C, Li H, Song Z (2018) Low genetic diversity in broodstocks of endangered Chinese sucker, Myxocyprinus asiaticus: implications for artificial propagation and conservation. ZooKeys 792: 117-132. https://doi.org/10.3897/zookeys.792.23785
Figure 2 Neighbor-joining tree based on FST values of the mtDNA control region (a) and phylogenetic tree of mtDNA control region haplotypes in Myxocyprinusasiaticus reconstructed with Bayesian inference (b). Bayesian posterior probabilities and bootstrap values are shown at nodes of neighbor-joining tree and BI tree, respectively. The number behind each haplotype represents the number of individuals from different sampling locations.
Figure 4 from: Liu D, Zhou Y, Yang K, Zhang X, Chen Y, Li C, Li H, Song Z (2018) Low genetic diversity in broodstocks of endangered Chinese sucker, Myxocyprinus asiaticus: implications for artificial propagation and conservation. ZooKeys 792: 117-132. https://doi.org/10.3897/zookeys.792.23785
Figure 4 Results of STRUCTURE of Myxocyprinusasiaticus broodstocks based on K = 3. Each column represents one individual and the colors represent the probability membership coefficient of that individual for each genetic cluster.
Figure 8 from: Veeravechsukij N, Krailas D, Namchote S, Wiggering B, Neiber MT, Glaubrecht M (2018) Molecular phylogeography and reproductive biology of the freshwater snail Tarebia granifera in Thailand and Timor (Cerithioidea, Thiaridae): morphological disparity versus genetic diversity. Zoosystematics and Evolution 94(2): 461-493. https://doi.org/10.3897/zse.94.28981
Figure 8 Frequency of ontogenetic stages in the subhemocoelic brood pouches of female Tarebiagranifera (Lamarck, 1816) (morph B) depending on occurrence in Thailand. Blue dots: mitochondrial clade A; pink dots: mitochondrial clade B. Size classes are assigned different colours in the pie charts (see legend) and rivers are coloured according to drainage systems; numbers at the pie charts refer to the total number of dissected specimens and the number of gravid females (in parentheses). The small letters refer to the stations Chiang Mai (a), Ko Samui (b) and Phuket (c) for which meteorological data representing the different climatic regions of Thailand were analysed (see Fig. 12).
Figure 4 from: Veeravechsukij N, Krailas D, Namchote S, Wiggering B, Neiber MT, Glaubrecht M (2018) Molecular phylogeography and reproductive biology of the freshwater snail Tarebia granifera in Thailand and Timor (Cerithioidea, Thiaridae): morphological disparity versus genetic diversity. Zoosystematics and Evolution 94(2): 461-493. https://doi.org/10.3897/zse.94.28981
Figure 4 Bayesiam 50% majority-rule consensus tree showing two major mitochondrial clades in Tarebiagranifera (Lamarck, 1816). Numbers at the nodes correspond to posterior probabilities (left), maximum likelihood (middle) and maximum parsimony (right) bootstrap values. At the tips of the tree voucher numbers (see material list in the main part of the text), country codes (THA: Thailand; TIM: Timor Leste; IDN: Indonesia) and the river where specimens were collected are indicated. The inset map shows the distribution of mitochondrial clades in Thailand (clade A: blue dots; clade B: magenta dots) and major river systems. The letters a–c in the map refer to localities, for which climatic data were available (see also Fig. 12). The inset with box plots shows the altitudinal distribution of mitochondrial caldes A and B, respectively.
Figure 6 from: Veeravechsukij N, Krailas D, Namchote S, Wiggering B, Neiber MT, Glaubrecht M (2018) Molecular phylogeography and reproductive biology of the freshwater snail Tarebia granifera in Thailand and Timor (Cerithioidea, Thiaridae): morphological disparity versus genetic diversity. Zoosystematics and Evolution 94(2): 461-493. https://doi.org/10.3897/zse.94.28981
Figure 6 Results of biometric (a–d) and geometric morphometrics study (e), for four different morphs (A,B,C,Timor) of Tarebiagranifera (Lamarck, 1816). Boxplots of (a) shell height, (b) shell width, (c) height of the last three whorls and (d) index of height of last three whorls agaianst shell width. Significant differences between groups are indicated by bars above the boxplots (e) Relative variance in shell shape along PC1 and PC2. Colour corresponding planes indicate the spread of each morph in the data set.
Figure 2 from: Veeravechsukij N, Krailas D, Namchote S, Wiggering B, Neiber MT, Glaubrecht M (2018) Molecular phylogeography and reproductive biology of the freshwater snail Tarebia granifera in Thailand and Timor (Cerithioidea, Thiaridae): morphological disparity versus genetic diversity. Zoosystematics and Evolution 94(2): 461-493. https://doi.org/10.3897/zse.94.28981
Figure 2 Shells of Tarebiagranifera (Lamarck, 1816) from Timor and Thailand. a. Syntypes (MHNG 1093/72/1-4) from Timor. b–g. Morph A, i.e. specimens from Thailand corresponding to T.granifera (SUT 0514044, SUT 0516123, SUT 0515088, SUT 0515068, SUT 0515059, SUT 0516144). h–m. Morph B, i.e. specimens from Thailand corresponding to named T.lineata (Gray, 1828) (SUT 0515081, SUT 0514046, SUT 0516129, SUT 0515092, SUT 0515095, SUT 0516143). n–s. Morph C from Thailand (SUT 0515079, SUT 0516126, SUT 0515055, SUT 0515091, SUT 0516147, SUT0516142). t–y. Shells of T.granifera from Timor Leste (ZMH 119364, ZMH 119359, ZMH 119357, ZMH 119353, ZMH 119363, ZMH 119361). For locality data, see the material list in the main part of the text. Scale bar: 10 mm.
Figure 12 from: Veeravechsukij N, Krailas D, Namchote S, Wiggering B, Neiber MT, Glaubrecht M (2018) Molecular phylogeography and reproductive biology of the freshwater snail Tarebia granifera in Thailand and Timor (Cerithioidea, Thiaridae): morphological disparity versus genetic diversity. Zoosystematics and Evolution 94(2): 461-493. https://doi.org/10.3897/zse.94.28981
Figure 12 Proportions of gravid vs. non-gravid specimens of Tarebiagranifera (Lamarck, 1816) collected in different months within a given year, plotted on climate charts for localities that are representative for different climatic regimes in Thailand. (a) Chiang Mai for inland locations; (b) Ko Samui for the Gulf of Thailand; (c) Phuket for the Andaman Sea (see also Fig. 8). For colour coding, see the inset legend.
Figure 10 from: Veeravechsukij N, Krailas D, Namchote S, Wiggering B, Neiber MT, Glaubrecht M (2018) Molecular phylogeography and reproductive biology of the freshwater snail Tarebia granifera in Thailand and Timor (Cerithioidea, Thiaridae): morphological disparity versus genetic diversity. Zoosystematics and Evolution 94(2): 461-493. https://doi.org/10.3897/zse.94.28981
Figure 10 Composition of contents of the subhemocoelic brood pouches of female Tarebiagranifera (Lamarck, 1816) (a, c) and proportions of gravid animals, i.e. those with filled brood pouch, versus non-gravid specimens (b, d) from Thailand and Timor Leste. a. Composition of contents of the brood pouches for morph A, B and C from Thailand (THA) and specimens from Timor Leste (see Figs 1, 8 and 9). b. Proportion of gravid vs. non-gravid specimens for morph A, B and C from Thailand and specimens from Timor Leste. c. Composition of contents of the brood pouches for mitochondrial clades A and B, respectively (see also Figs 4, 8, 9). d. Proportion of gravid vs. non-gravid specimens for mitochondrial clades A and B, respectively. For colour coding, see the inset legends.
Figure 1 from: Veeravechsukij N, Krailas D, Namchote S, Wiggering B, Neiber MT, Glaubrecht M (2018) Molecular phylogeography and reproductive biology of the freshwater snail Tarebia granifera in Thailand and Timor (Cerithioidea, Thiaridae): morphological disparity versus genetic diversity. Zoosystematics and Evolution 94(2): 461-493. https://doi.org/10.3897/zse.94.28981
Figure 1 Distribution of the freshwater thiarid snail Tarebiagranifera (Lamarck, 1816) across its range in Southeast Asia, with the focus on occurrences in Thailand, contrasted with type and topotypical material from the island of Timor. Asteriks: type locality of "Melania" granifera Lamarck, 1816, reconstructed to originate from near Kupang in western Timor (see text for more details); black dots: sequenced material used in this study; white dots: shell material from museum collections analysed and literature records; white dots with black dot inside: wet material preserved in ethanol.
Figure 9 from: Veeravechsukij N, Krailas D, Namchote S, Wiggering B, Neiber MT, Glaubrecht M (2018) Molecular phylogeography and reproductive biology of the freshwater snail Tarebia granifera in Thailand and Timor (Cerithioidea, Thiaridae): morphological disparity versus genetic diversity. Zoosystematics and Evolution 94(2): 461-493. https://doi.org/10.3897/zse.94.28981
Figure 9 Frequency of ontogenetic stages in the subhemocoelic brood pouches of female Tarebiagranifera (Lamarck, 1816) depending on occurrence in Thailand and Timor Leste. a. Morph A in Thailand; b. Morph C in Thailand; c. Timor Leste. Blue dots: mitochondrial clade A; pink dots: mitochondrial clade B. Size classes are assigned different colours in the pie charts (see legend) and rivers are coloured according to drainage systems; numbers at the pie charts refer to the total number of dissected specimens and the number of gravid females (in parentheses).
Figure 5 from: Veeravechsukij N, Krailas D, Namchote S, Wiggering B, Neiber MT, Glaubrecht M (2018) Molecular phylogeography and reproductive biology of the freshwater snail Tarebia granifera in Thailand and Timor (Cerithioidea, Thiaridae): morphological disparity versus genetic diversity. Zoosystematics and Evolution 94(2): 461-493. https://doi.org/10.3897/zse.94.28981
Figure 5 Molecular analysis of Tarebia. a–b. Median-joining haplotype networks based on 16S (a) and cox1 (b) sequence data of Tarebiagranifera (Lamarck, 1816). The size of each circle represents the frequency of a haplotype and the colour refers to main mitochondrial clades obtained from the phylogenetic analyses (Fig. 4; blue: clade A, magenta: clade B). Tick marks between circles represent evolutionary steps. c. Results of the bGMYC analysis. Colouration of the matrix cells represents pairwise probabilities of conspecificity. d. Dated molecular tree (only unique haplotypes were included). Numbers at the nodes are node ages in Ma, bars represent 95% highest posterior probabilitiy intervals.
Figure 7 from: Veeravechsukij N, Krailas D, Namchote S, Wiggering B, Neiber MT, Glaubrecht M (2018) Molecular phylogeography and reproductive biology of the freshwater snail Tarebia granifera in Thailand and Timor (Cerithioidea, Thiaridae): morphological disparity versus genetic diversity. Zoosystematics and Evolution 94(2): 461-493. https://doi.org/10.3897/zse.94.28981
Figure 7 Results of biometric (a–d) and geometric morphometrics study (e), for the two mitochondiral clades of Tarebiagranifera (Lamarck, 1816) found in this study. Boxplots of (a) shell height, (b) shell width, (c) height of the last three whorls and (d) index of height of last three whorls agaianst shell width. Significant differences between groups are indicated by bars above the boxplots (e). Relative variance in shell shape along PC1 and PC2. Colour corresponding planes indicate the spread of each morph in the data set.
Figure 3 from: Veeravechsukij N, Krailas D, Namchote S, Wiggering B, Neiber MT, Glaubrecht M (2018) Molecular phylogeography and reproductive biology of the freshwater snail Tarebia granifera in Thailand and Timor (Cerithioidea, Thiaridae): morphological disparity versus genetic diversity. Zoosystematics and Evolution 94(2): 461-493. https://doi.org/10.3897/zse.94.28981
Figure 3 Biometrical parameters (a) and position of landmarks (b). Abbreviations: height of shell (h), width of shell (w), length of aperture (la), width of aperture (wa), height of body whorl (hbw) and height of last three whorls (l3w).
Figure 11 from: Veeravechsukij N, Krailas D, Namchote S, Wiggering B, Neiber MT, Glaubrecht M (2018) Molecular phylogeography and reproductive biology of the freshwater snail Tarebia granifera in Thailand and Timor (Cerithioidea, Thiaridae): morphological disparity versus genetic diversity. Zoosystematics and Evolution 94(2): 461-493. https://doi.org/10.3897/zse.94.28981
Figure 11 Composition of contents of the subhemocoelic brood pouches of female Tarebiagranifera (Lamarck, 1816) (a) and proportions of gravid animals, i.e. those with brood pouch containing juveniles or other stages, and non-gravid specimens (b) from Thailand grouped according to rivers. For colour coding, see the inset legends.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.