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Year-round monitoring at a Pacific coastal campus reveals similar winter and spring collision mortality and high vulnerability of the Varied Thrush
<p>Bird-window collisions are a leading cause of direct anthropogenic avian mortality, yet our state of knowledge regarding this threat relies heavily on eastern North American studies. Seasonal patterns of collision mortality may differ along the Pacific coast, and western North American species remain understudied. We therefore surveyed a stratified random sample of 8 buildings for collisions at the University of British Columbia, Vancouver, Canada over 45-day periods during 2 winters, 1 spring, 1 summer and 1 fall season between January 22, 2015 and March 15, 2017. After accounting for the rate of scavenging and efficiency of observers in finding carcasses, we estimated that 360 collision fatalities (95% C.I.: 281 to 486) occurred over 225 days of monitoring. Collision mortality was highest in fall, but in contrast to most published research, collision mortality was intermediate in both winter and spring, and was lowest in summer. In winter 2017, we performed point count surveys to assess whether individual species are disproportionately vulnerable to collisions when accounting for population size, and found that the Varied Thrush (<em>Ixoreus naevius</em>) was 76.9 times more likely to collide with buildings, relative to average species vulnerability in winter. To our knowledge, this is the first study to report the Varied Thrush as a species that is disproportionately vulnerable to collisions. Further studies are needed to assess the vulnerability of Western North American species and subspecies and to determine whether similar patterns of seasonal collision mortality are found elsewhere.</p>
Table X: Population-wise trait data (mean, standard error and ranges) of A) 1st year plants, B) 2nd year spring phase plants and C) 2nd year monsoon phase plants
<p>Plants of <em>Anisomeles indica</em> are perennial woody shrubs that initiate their life cycle from seeds. The young plants emerging from seeds enter sexual phase immediately thereafter. After setting seeds, the plants do not die. Instead, following winters, their root stock perennates where after these plants follow spring and monsoon phases for the rest of their lives. Plants follow vegetative to blooming phenology step by step without showing any functional overlap in their reproductive phase. The spring phase of perennating plants on account of its brevity is unable to ensure sustainable reproductive output necessitating the monsoon phase. Parallelly, the seeds dispersed through these phases grow and follow the same strategy of sexual to spring to monsoon phases. This modified variant of iteroparity coupled with the advantages accrued to particular morphological characters such as increased plant height, numbers of tillers and inflorescences per plant, fruits per infructescence and seed weight per unit leaf area enhance its survival and reproductive fitness.</p>
Baliles Center (Hull Springs) Restored Wetland Data from 2022-02-05 to 2022-03-08
<p>General Metadata for Hull Springs Restored Wetland Sampling Station</p> <p>Files</p> <p>Specific metadata for each deployment and sensor can be found as text files with the file format of:</p> <pre><code>HS_wetland_DO_YYYY-MM-DD_metadata.txt HS_wetland_Depth_YYYY-MM-DD_metadata.txt HS_wetland_CT_YYYY-MM-DD_metadata.txt</code></pre> <p>Where YYYY-MM-DD is the date that the sampling period ended.</p> <p>NOTE: The metadata in the above file is collected from the data logger and does not have all of fields present in the final data set, because some were created during data cleaning. Details on how the data were cleaned and variables created can be found at in the cleaning scripts on Gitlab <a href="https://gitlab.com/leo147/leo/-/tree/master/lab_notebook/data_processing/cleaning_scripts">https://gitlab.com/leo147/leo/-/tree/master/lab_notebook/data_processing/cleaning_scripts</a>.</p> <p>File Created</p> <ul> <li>2021-06-16 by KF</li> </ul> <p>File Modified</p> <ul> <li>2021-07-22 by KF - added general metadata for the pressure transducer and the CT sensor.</li> <li>2021-11-10 by KF - updated to include the depth calculations from the water level logger.</li> </ul> <p>Description</p> <p>These data are from the sampling station in the restored wetland at the Baliles Center for Environmetal Education at Hull Springs. The sensors are in the NE corner of the shallow pond portion of the restored wetland (38.119289, -76.667252).</p> <p>All data are CC-BY and should be cited using the DOI available at <a href="https://zenodo.org/communities/leo/">https://zenodo.org/communities/leo/</a></p> <p>Station Specifics</p> <p>The specific at each site are:</p> <pre><code>* Water Temperature (dC) and Dissolved Oxygen (mg/l) are collected with a Onset HOBO U26-001 Dissolved Oxygen Logger * Water Temperature (dC) and Water Pressure (mmHg) are collected with an Onset HOBO U20-001-01 Water Level Logger * Water Temperature (dC) and Conductivity are collected with an Onset HOBO U24-001 Conductivity Logger * Air Temperature (dC) and Barometric Pressure (mmHg) are collected with an Onset HOBO U20-001-01 Water Level Logger mounted in the air next to the wetland.</code></pre> <p>The sensors are sampled every 15 minutes</p> <p>Measurement Parameters, units, and Variable Names</p> <pre><code>* date.time - the date and time that the record was collected, reported in POSIX standard time (YYYY-MM-DD HH:MM:SS) * observation.DO, .CT, .press, or .BP - the incremental number of each observation from the DO, conductivity, water pressure, or barometric pressure sensor. * timestamp.DO, .CT, .press, or .BP - the data and time that the record was collected, as reported by the data logger (MM/DD/YY HH:MM:SS A/PM) from the DO, conductivity, water pressure, or barometric pressure sensor. * DO - the concentration of dissolved oxygen in the water (mg/L) * Temp.DO, .CT, .press, or .BP - the temperature (dC) from the DO, conductivity, water pressure, or barometric pressure sensor. * Pressure.press or .BP - the pressure recorded by the pressure transducer (kPa) on the water pressure or barometric pressure sensor. * Z - the depth of the water (cm). * Low_Range_CT - the conductivity read from 0 - 2500 uS/cm (uS/cm) * Full_Range_CT - the conductivity read from 0 - 15000 uS/cm (mmHg) * press.g.cm2 - the pressure from the water pressure sensor (g/cm^2) * BP.g.cm2 - the barometric pressure from the barometric pressure sensor (g/cm^2)</code></pre>
Supplementary material 1 from: Premate E, Fišer Ž, Kuralt Ž, Pekolj A, Trajbarič T, Milavc E, Hanc Ž, Kostanjšek R (2022) Behavioral observations of the olm (Proteus anguinus) in a karst spring via direct observations and camera trapping. Subterranean Biology 44: 69-83. https://doi.org/10.3897/subtbiol.44.87295
Figure S1
Figure 4 from: Campbell DC, Clark SA, Lydeard C (2017) Phylogenetic analysis of the Lancinae (Gastropoda, Lymnaeidae) with a description of the U.S. federally endangered Banbury Springs lanx. ZooKeys 663: 107-132. https://doi.org/10.3897/zookeys.663.11320
Figure 4 - Reproductive anatomy, holotype of Idaholanx fresti sp. n. AG albumen gland BW body wall NG nidamental gland O oviduct OT ovotestis P penis PB pyriform body PG prostate gland PS penial sheath S spermatheca SD spermathecal duct SV seminal vesicle U uterus V vagina VD vas deferens.
Figure 1 from: Campbell DC, Clark SA, Lydeard C (2017) Phylogenetic analysis of the Lancinae (Gastropoda, Lymnaeidae) with a description of the U.S. federally endangered Banbury Springs lanx. ZooKeys 663: 107-132. https://doi.org/10.3897/zookeys.663.11320
Figure 1 - Phylogram of the Bayesian majority-rule consensus tree for 28S, cox1, and calmodulin intron sequence data. Numbers on branches are bootstrap percentages before the slash, then Bayesian posterior probabilities. - indicates a value under 50% or 0.5 when the other method gave higher values. Taxon names in bold are lancines; starred taxa are Acellinae.
Figure 2 from: Campbell DC, Clark SA, Lydeard C (2017) Phylogenetic analysis of the Lancinae (Gastropoda, Lymnaeidae) with a description of the U.S. federally endangered Banbury Springs lanx. ZooKeys 663: 107-132. https://doi.org/10.3897/zookeys.663.11320
Figure 2 - Phylogram of the Bayesian majority-rule consensus tree for 16S sequence data. Numbers on branches are bootstrap percentages before the slash, then Bayesian posterior probabilities. - indicates a value under 50% or 0.5 when the other method gave higher values. Taxon names in bold are lancines; starred taxa are Acellinae.
Figure 5 from: Campbell DC, Clark SA, Lydeard C (2017) Phylogenetic analysis of the Lancinae (Gastropoda, Lymnaeidae) with a description of the U.S. federally endangered Banbury Springs lanx. ZooKeys 663: 107-132. https://doi.org/10.3897/zookeys.663.11320
Figure 5 - Comparison of shells and animals of Idaholanx n. gen., Fisherola and Lanx. The shells are oriented with the head of the animal facing right, while the whole animals without shells are dorsal views with the head up. Idaholanx fresti sp. n. A shell B whole animal. Fisherola nuttalli: C shell D whole animal. Lanx patelloides. E shell F whole animal. The red arrows indicate the position of the head in A, C; the position of the gap in the columella muscle in B, D and the narrow connection in F. Images not to scale.
Figure 6 from: Campbell DC, Clark SA, Lydeard C (2017) Phylogenetic analysis of the Lancinae (Gastropoda, Lymnaeidae) with a description of the U.S. federally endangered Banbury Springs lanx. ZooKeys 663: 107-132. https://doi.org/10.3897/zookeys.663.11320
Figure 6 - Distribution of Idaholanx fresti. Insets show location of Idaho in the US and of the springs in Idaho.
Planktonic drivers of carbon transformation during different stages of the spring bloom at the Patagonian Shelf-break front
<p>This dataset originates from a detailed study on the carbon cycle in the Argentine Patagonian Shelf, a crucial area for global carbon sequestration. The data were collected during the austral spring to investigate the structure of microbial communities, including viruses, and their impact on the transformation of dissolved carbon during different phases of the spring phytoplankton bloom.</p>
Figure 2 in Endemic spring snails Terrestribythinella (Mollusca) as unusual material for larval case of Crunoecia irrorata (Trichoptera: Lepidostomatidae) in Transcarpathian Ukraine
Figure 2. Larva of Crunoeсia irrorata (Curtis, 1834) with case built of beech leaves and Terrestribythinella living snails. A – dorsal view; B – lateral view; C – ventral view; D – head and thorax, dorsal view; E – prosternal horn (arrowed).
supplemental files for Assembly and analysis of sequence from a spring and winter type Camelina sativa by whole genome PacBio HiFi technologies
<p><span>Supplemental files for Assembly and analysis of sequence from a spring and winter type <em>Camelina sativa</em> by whole genome PacBio HiFi technologies</span></p>
FIGURE 6 in A New Species of Nebria Latreille (Insecta: Coleoptera: Carabidae: Nebriini) from the Spring Mountains of Southern Nevada
FIGURE 6. Digital images of female reproductive tract, dorsal aspect. A. Nebria baumanni sp. nov.; B. Nebria giulianii Kavanaugh; badl = anterodorsal lobe of bursa copulatrix; bpdl = posterodorsal lobe of bursa copulatrix; bs = bursal sclerite (in posterior wall of posterodorsal lobe); co = common oviduct; sd = spermathecal duct; sp = spermathecal reservoir; white circle = insertion point of spermathecal duct (at base of posterior face of dorsal lobe). Scale line = 0.5mm.
FIGURE 4 in A New Species of Nebria Latreille (Insecta: Coleoptera: Carabidae: Nebriini) from the Spring Mountains of Southern Nevada
FIGURE 4. Digital images of elytral apices, dorsal aspect; A. Nebria baumanni sp. nov.; B Nebria giulianii Kavanaugh. Scale line = 0.5 mm.
Figures 58-65 from: Moubayed-Breil J, Lods-Crozet B (2018) On the genus Chaetocladius s. str. Kieffer, 1911 from Switzerland with descriptions of five new relic species occurring in glacial alpine springs and streams (Diptera, Chironomidae). Alpine Entomology 2: 15-34. https://doi.org/10.3897/alpento.2.22759
Figures 58-65 Male adult of Chaetocladius muttensis sp. n. 58–59, hypopygium, dorsal (58) and ventral with anal point and tergite IX removed (59); 60–61, virga, two aspects; 62, tergite IX and anal point in lateral view; 63, right gonostylus, lateral; 64, left gonostylus, distal part (dorsal); 65, anal point, gonocoxite, tergite IX and gonostylus in lateral view.
Figures 22-31 from: Moubayed-Breil J, Lods-Crozet B (2018) On the genus Chaetocladius s. str. Kieffer, 1911 from Switzerland with descriptions of five new relic species occurring in glacial alpine springs and streams (Diptera, Chironomidae). Alpine Entomology 2: 15-34. https://doi.org/10.3897/alpento.2.22759
Figures 22-31 Male adult of Chaetocladius lencioniae sp. n.: 22, last flagellomere and preceding segment; 23, clypeus; 24, scutellum. Hypoygium: 25–26, dorsal (25) and ventral (26) with anal point and tergite IX removed; 27, virga; 28, anal point and tergite IX in lateral view; 29, left gonostylus, dorsal; 30, right gonostylus, ventral; 31, gonocoxite and gonostylus in lateral view.
Figures 14-21 from: Moubayed-Breil J, Lods-Crozet B (2018) On the genus Chaetocladius s. str. Kieffer, 1911 from Switzerland with descriptions of five new relic species occurring in glacial alpine springs and streams (Diptera, Chironomidae). Alpine Entomology 2: 15-34. https://doi.org/10.3897/alpento.2.22759
Figures 14-21 Male adult of Chaetocladius spp. C. castellae sp. n. (paratype-1): 14–15, gonocoxite, lateral and dorsal; 16, gonostylus in dorsal view. C. castellae sp. n. (paratype-2): 17, hypopygium in dorsal view; 18, dorsal lamellae of tergite IX. C. insolitus: 19, gonostylus in dorsal view; 20, anal point and tergite IX in lateral view; 21, dorsal lamellae of tergite IX.
Figure 66 from: Moubayed-Breil J, Lods-Crozet B (2018) On the genus Chaetocladius s. str. Kieffer, 1911 from Switzerland with descriptions of five new relic species occurring in glacial alpine springs and streams (Diptera, Chironomidae). Alpine Entomology 2: 15-34. https://doi.org/10.3897/alpento.2.22759
Figure 66 The Mutt stream valley with the Mutt glacier in the back and in the foreground station M4 (Photo, B. Lods-Crozet).
Figures 45-57 from: Moubayed-Breil J, Lods-Crozet B (2018) On the genus Chaetocladius s. str. Kieffer, 1911 from Switzerland with descriptions of five new relic species occurring in glacial alpine springs and streams (Diptera, Chironomidae). Alpine Entomology 2: 15-34. https://doi.org/10.3897/alpento.2.22759
Figures 45-57 Male adult of Chaetocladius macunensis sp. n.: 45, palpomeres 2–3; 46, last flagellomere and the two preceding segments; 47, clypeus; 48, head, thorax and first abdominal segment; 49, antepronotum, left side; 50, tarsomeres 2–4 of PIII; 51, anal point and tergite IX in lateral view; 52–53, hypopygium, dorsal (52) and ventral with anal point and tergite IX removed (53); 54, virga; 55, left gonostylus, dorsal; 56, right gonostylus, lateral; 57, anal point, gonocoxite and gonostylus in lateral view.
Figure 68 from: Moubayed-Breil J, Lods-Crozet B (2018) On the genus Chaetocladius s. str. Kieffer, 1911 from Switzerland with descriptions of five new relic species occurring in glacial alpine springs and streams (Diptera, Chironomidae). Alpine Entomology 2: 15-34. https://doi.org/10.3897/alpento.2.22759
Figure 68 Malaise trap set up at Immez Lake (Macun cirque, Eastern Alps, Swiss National Park, altitude 2616 m (photo J.L. Lods).
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Allen Brain Atlas
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Annotated Behaviour and Observability Dataset (ABODe)
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