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23,670 results for “Site”
Training data for ChIP-seq data analysis (Galaxy Training Material): Identification of the binding sites of the Estrogen receptor
<p>The data provided here are part of a Galaxy Training Network tutorial that analyzes ChIP-seq data from a study published by Ross-Inness et al., 2012 (DOI:10.1038/nature10730) to identify the binding sites of the Estrogen receptor, a transcription factor known to be associated with different types of breast cancer.</p>
Figure 2: Site's Ontology
<p>Structuring Layer: it must generate a new ontology reflecting a particular website structure, and it must merge it with the DB Ontology. The Structuring Layer is composed by two sublayers: (i) the Site Mapping Sublayer map the website structure over a domain ontology that we will call Site Structure Ontology; (ii) the Merging Layer merge the DB Ontology with the Site Structure Ontology creating a new ontology called Site’s Ontology.</p>
FIGURE 7. Age-specific discriminant analysis using all morphometric parameters for all sites. 7A in Taxon-specific variability of leaf traits in three long-ranging fossil-species of the Paleogene and Neogene: Responses to climate?
FIGURE 7. Age-specific discriminant analysis using all morphometric parameters for all sites. 7A: Eocene. 7B: Oligocene. Triangles: Platanus neptuni. Squares: Eotrigonobalanus furcinervis. Circles: Daphnogene cinnamomifolia.
FIGURE 4 in Late Pleistocene insects from the Dubrovino site at Ob River (West Siberia, Russia) and their paleoenvironmental significance
FIGURE 4. Subfossil beetle fragments from the Dubrovino assemblage; elytra (1-2, 7, 11, 13, 17), pronotum (3-4, 6, 8, 15), head (5, 9, 14, 16), and rostrum (10, 12). 1, Otiorhynchus altaicus Stierlin, 1861; 2–3, O. obscurus Gyllenhal in Schoenherr, 1834; 4, O. pullus Gyllenhal in Schoenherr, 1834; 5-6, O. politus Gyllenhal in Schoenherr, 1834; 7, O. beatus Faust, 1890; 8, Stephanocleonus eruditus Faust, 1890; 9, S. isochromus Suvorov, 1912; 10, S. favens Faust, 1884; 11, Pissodes insignatus Boheman in Schoenherr, 1843; 12, Trichalophus biguttatus (Gebler, 1832); 13, Tychius albolineatus Motschulsky, 1860; 14, Phyllobius femoralis Boheman in Schoenherr, 1842; 15, Metadonus distinguendus (Boheman in Schoenherr, 1842); 16, Notaris aethiops (Paykull, 1792); 17, Tournotaris bimaculata (Fabricius, 1787). Scale bars are 1 mm increments.
FIGURE 3 in Late Pleistocene insects from the Dubrovino site at Ob River (West Siberia, Russia) and their paleoenvironmental significance
FIGURE 3. Subfossil beetle fragments from the Dubrovino assemblage; pronotum (1-4, 6, 10-12), head (5), and elytron (7-9, 13-15). 1, Elaphrus cf. riparius (Linnaeus, 1758); 2, Pogonus punctulatus Dejean, 1828; 3, Pterostichus cf. brevicornis (Kirby, 1837); 4, Cymindis cf. arctica Kryzhanovskij et Emetz, 1979; 5, Aphodius multiplex Reitter, 1867; 6, Cymbiodyta marginella (Fabricius, 1792); 7, Trechus cf. compactulus Belousov et Kabak, 1996; 8, Bembidion dauricum (Motschulsky, 1844); 9, Olisthopus sturmii (Duftschmid, 1812); 10, Pterostichus macer (Marsham, 1802); 11, P. mirus (Tschitschérine, 1894); 12, Amara aurichalcea Germar, 1823; 13, Porcinolus murinus (Fabricius, 1794); 14, Morychus ostasiaticus Tshernyshev, 1997; 15, Poecilus cf. ravus (Lutshnik, 1922). Scale bars are 1 mm increments. Figure parts 1–9 and 10–15 correspond to upper and the bottom scale bars, respectively.
FIGURE 1 in Late Pleistocene insects from the Dubrovino site at Ob River (West Siberia, Russia) and their paleoenvironmental significance
FIGURE 1. Locality map of Dubrovino site and similarage late Pleistocene deposits from the West Siberian Plain. 1, Dubrovino; 2, Tyurseda-Khadyta; 3, Kul'egan- 2247; 4, Bun'kovo; 5, Kalistratikha; 6, Novaya Surtaika.
Carbon sequestration potential in hedgerow soils: Results from 23 sites in Germany
<p>Dataset to the manuscript: Drexler, S. & Don, A. (2024). Carbon sequestration potential in hedgerow soils: Results from 23 sites in Germany. Geoderma. <a href="https://doi.org/10.1016/j.geoderma.2024.116878">https://doi.org/10.1016/j.geoderma.2024.116878</a></p> <ul> <li>Drexler_Don_2024_Data: contains the lab data for all samples</li> <li>Drexler_Don_2024_SOC_Stock_Per_Core: contains the calculated SOC stocks per soil core</li> </ul>
Data from: Does the history of option quality affect nest site choice in the acorn ant?
<p>During decision−making, animals consider not only the current but also the past quality of options. For example, when humans evaluate performance (e.g. sales) of employees, they do not only consider the average performance but also the trend of performance ascending performance is often viewed as more favorable than descending performance. In our study, we test if non-human animals have a similar bias when they are evaluating options using house-hunting by the acorn ant, <em>Temnothorax curvispinosus</em>, as our model system. Our data show that when nest-site quality is static over time, ant colonies tend to prefer the nest site which was better (i.e. darker) between two nest options. However, when the nest quality changes—one improves and the other worsens—over time, more colonies choose the low-quality, but improving, nest than the high-quality, but worsening, nest. These results suggest that a continuous change of option quality may influence evaluation. We discuss alternative explanations for our results, possible mechanisms and potential ecological benefits for keeping track of the nest-site quality.</p>
Dataset for: A reproduction of C. Vita-Finzi and E. S. Higgs's Prehistoric Economy in the Mount Carmel Area of Palestine: Site Catchment Analysis
<p><u>Land Shapefile</u></p> <p>The land vector dataset was sourced from the 10m Natural Earth Geopackage dataset.</p> <p><u>Topology</u></p> <p>The topological raster data set was sourced from 30m NASA Shuttle Radar Topography Mission (SRTM), which displays the global topography as it is found in the modern day.</p> <p><u>Land-Use</u></p> <p>The land-use raster was sourced from the Sentinel-2 10m Land Use/Land Cover Timeseries which provides a 10m resolution of land-use in the study area as of 2021.</p> <p><u>Rivers</u></p> <p>The river vector dataset was sourced from the HydroSHEDS data at 15 arc-second resolution based on the SRTM DEM.</p> <p><u>Lakes</u></p> <p>The lakes shapefile for the study area is from a large-scale data set from Natural Earth on a scale of 1:10m. This shapefile produces polygons which demonstrate the extent of the major lakes present in the area.</p>
Data from: Flying without fear: shooting disturbance has little effect on site preferences in a conflict goose species
<p>Human-modified landscapes have created opportunities for numerous taxa. Agricultural expansion has proven advantageous for several Arctic-breeding goose species, leading to increased abundance and intensified conflict with farmers. Shooting is frequently implemented as a mitigation strategy to control population and via scaring to alter the spatial distribution of conflict species. However, the efficacy of such regimes in manipulating the fear landscape is not always investigated.</p> <p>We developed resource selection functions using GPS-tracking data for Greenland barnacle geese (<em>Branta leucopsis</em>) wintering on Islay, Scotland to assess foraging site choice. We assessed overall foraging site preference and evaluated the influence of shooting management on foraging site selection of key habitats.</p> <p>Barnacle geese selected for improved grassland areas and the likelihood of utilisation varied between these fields according to field-specific management. Protected areas were strongly selected for along with newly reseeded grassland. Field-level exposure to shooting disturbance did not cause a notable change in site selection.</p> <p><strong><em>Synthesis and Applications: </em></strong>Our results demonstrate the importance of providing refuges within managed agricultural landscapes to encourage site use and minimise conflict. We highlight how low intensity shooting disturbance may be ineffective in altering winter habitat selection of high-value foraging sites (especially near roosts). If future management aimed to stimulate redistribution higher intensity shooting disturbance along with the spatial and temporal coordination of shooting effort would likely be required to create a stronger perceived gradient of disturbance risk.</p>
Рис. 1. РаспреΑеΛение кΛючевых мест гнезΑования ΑаΛьневосточного аиста в Хабаровском крае в 1999–2000 гг. (по: Δарман и Αр. 2000b; Сурмач, Шибаев 2000) Fig. 1. Distribution of key nesting sites of the Oriental White Stork in the Khabarovsk Territory in 1999–2000 (based on: Darmanet al. 2000b; Surmach, Shibaev 2000) in The number and distribution of the Oriental White Stork Ciconia boyciana Swinhoe, 1873 in the Khabarovskiy Region
Рис. 1. РаспреΑеΛение кΛючевых мест гнезΑования ΑаΛьневосточного аиста в Хабаровском крае в 1999–2000 гг. (по: Δарман и Αр. 2000b; Сурмач, Шибаев 2000) Fig. 1. Distribution of key nesting sites of the Oriental White Stork in the Khabarovsk Territory in 1999–2000 (based on: Darmanet al. 2000b; Surmach, Shibaev 2000)
Рис. 9. Фрагменты раковин жемчужниц Dahurinaia dahurica иЗ раскопа 3 поселениЯ Константиновка-1. МасштабнаЯ линейка 5 см. Fig. 9. Fragments of pearl mussel Dahurinaia dahurica shells from excavation 3 of the Konstantinovka-1 site. Scale bar 5 cm. in Mollusks from the archaeological site Konstantinovka-1 in Primorye (Russian Far East)
Рис. 9. Фрагменты раковин жемчужниц Dahurinaia dahurica иЗ раскопа 3 поселениЯ Константиновка-1. МасштабнаЯ линейка 5 см. Fig. 9. Fragments of pearl mussel Dahurinaia dahurica shells from excavation 3 of the Konstantinovka-1 site. Scale bar 5 cm.
Fig. 4. The Konstantinovka-1 in Mollusks from the archaeological site Konstantinovka-1 in Primorye (Russian Far East)
Fig. 4. The Konstantinovka-1 site: А – еxcavation 2. Remnants of a half-dugout (dwelling 4); В – еxcavation 3. Remnants (cellar) of ditch of the building N 40.
Рис. 6. Морские двустворчатые моллюски иЗ раскопа 5 поселениЯ Константиновка-1: A–H – Mizuhopecten yessoensis (Jay, 1857) (слои 1, 2 – бровка). Длина фрагментов от 51 до 121 мм. Fig. 6. Marine bivalves from excavation 5 of the Konstantinovka-1 settlement excavations: A–H – Mizuhopecten yessoensis (Jay, 1857) (levels 1, 2 – cross section). Sizes of shell fragments are from 51 to 121 mm. in Mollusks from the archaeological site Konstantinovka-1 in Primorye (Russian Far East)
Рис. 6. Морские двустворчатые моллюски иЗ раскопа 5 поселениЯ Константиновка-1: A–H – Mizuhopecten yessoensis (Jay, 1857) (слои 1, 2 – бровка). Длина фрагментов от 51 до 121 мм. Fig. 6. Marine bivalves from excavation 5 of the Konstantinovka-1 settlement excavations: A–H – Mizuhopecten yessoensis (Jay, 1857) (levels 1, 2 – cross section). Sizes of shell fragments are from 51 to 121 mm.
Рис. 8. Фрагменты раковин пресноводных моллюсков иЗ раскопов поселениЯ Константиновка-1: А, B – створка жемчужницы иЗ раскопа 1, вид снаружи и иЗнутри; C–E – створки жемчужниц Dahurinaia dahurica иЗ раскопа 2; F, G – фрагмент раковины гастроподы иЗ раскопа 2, вид с раЗных ракурсов. Масштабные линейки 2 см. Fig. 8. Fragments of freshwater mollusk shells from the Konstantinovka-1 site excavations: A, B – pearl mussel Dahurinaia dahurica from excavation 1, the inner and outer views; C–E – pearl mussel Dahurinaia dahurica from excavation 2; F, G – fragment of a gastropod shell from excavation 2, view from different angles. Scale bars 2 cm. in Mollusks from the archaeological site Konstantinovka-1 in Primorye (Russian Far East)
Рис. 8. Фрагменты раковин пресноводных моллюсков иЗ раскопов поселениЯ Константиновка-1: А, B – створка жемчужницы иЗ раскопа 1, вид снаружи и иЗнутри; C–E – створки жемчужниц Dahurinaia dahurica иЗ раскопа 2; F, G – фрагмент раковины гастроподы иЗ раскопа 2, вид с раЗных ракурсов. Масштабные линейки 2 см. Fig. 8. Fragments of freshwater mollusk shells from the Konstantinovka-1 site excavations: A, B – pearl mussel Dahurinaia dahurica from excavation 1, the inner and outer views; C–E – pearl mussel Dahurinaia dahurica from excavation 2; F, G – fragment of a gastropod shell from excavation 2, view from different angles. Scale bars 2 cm.
Рис. 2. Вид на поселение Константиновка-1 с юго-востока. Fig. 2. View of the Konstantinovka-1 site from south-west. in Mollusks from the archaeological site Konstantinovka-1 in Primorye (Russian Far East)
Рис. 2. Вид на поселение Константиновка-1 с юго-востока. Fig. 2. View of the Konstantinovka-1 site from south-west.
Рис. 17. Выброшенная раковина анадары (Anadara broughtonii) на пляЖе б. Теляковского с прикрепившимися риЗоидами водорослей. Fig. 17. A stranded blood cockle shell (Anadara broughtonii) with attached algae rhizoids on the beach of Telyakovskogo Bay. in Mollusks from the shell-midden of the Telyakovskogo 2 site in southern Primorye (Yankovskaya culture), their paleoecology and role in paleoeconomy
Рис. 17. Выброшенная раковина анадары (Anadara broughtonii) на пляЖе б. Теляковского с прикрепившимися риЗоидами водорослей. Fig. 17. A stranded blood cockle shell (Anadara broughtonii) with attached algae rhizoids on the beach of Telyakovskogo Bay.
Рис. 15. ПляЖи и пляЖевые танатоценоЗы б. Теляковского (июнь 2015 г.): А – северная часть бухты: пляЖ и валунно-глыбовая литораль; В – срединная часть бухты; С – массовые выбросы устриц (Crassostrea gigas), мидий (Crenomytilus grayanus) и модиолусов (Modiolus kurilensis) в северной части бухты; D – выбросы спиЗулы (Spisula sachalinensis) в срединной части бухты. Fig. 15. Beaches and beach thanatocoenoses of Telyakovskogo Bay (June 2015): A – northern part of the bay: a beach and rocky intertidal zone; B – middle part of the bay; C – abundant strandings of oysters (Crassostrea gigas), mussels (Crenomytilus grayanus and Modiolus kurilensis) in the northern part; D – strandings of Spisula sachalinensis in the middle part. in Mollusks from the shell-midden of the Telyakovskogo 2 site in southern Primorye (Yankovskaya culture), their paleoecology and role in paleoeconomy
Рис. 15. ПляЖи и пляЖевые танатоценоЗы б. Теляковского (июнь 2015 г.): А – северная часть бухты: пляЖ и валунно-глыбовая литораль; В – срединная часть бухты; С – массовые выбросы устриц (Crassostrea gigas), мидий (Crenomytilus grayanus) и модиолусов (Modiolus kurilensis) в северной части бухты; D – выбросы спиЗулы (Spisula sachalinensis) в срединной части бухты. Fig. 15. Beaches and beach thanatocoenoses of Telyakovskogo Bay (June 2015): A – northern part of the bay: a beach and rocky intertidal zone; B – middle part of the bay; C – abundant strandings of oysters (Crassostrea gigas), mussels (Crenomytilus grayanus and Modiolus kurilensis) in the northern part; D – strandings of Spisula sachalinensis in the middle part.
Рис. 12. Характер фрагментации и повреЖдений створок спиЗулы сахалинской Spisula sachalinensis иЗ раскопа 1. in Mollusks from the shell-midden of the Telyakovskogo 2 site in southern Primorye (Yankovskaya culture), their paleoecology and role in paleoeconomy
Рис. 12. Характер фрагментации и повреЖдений створок спиЗулы сахалинской Spisula sachalinensis иЗ раскопа 1.
Рис. 16. Выброшенная друЗа мидий (Crenomytilus grayanus) на пляЖе б. Теляковского с прикрепившимися риЗоидами водорослей. in Mollusks from the shell-midden of the Telyakovskogo 2 site in southern Primorye (Yankovskaya culture), their paleoecology and role in paleoeconomy
Рис. 16. Выброшенная друЗа мидий (Crenomytilus grayanus) на пляЖе б. Теляковского с прикрепившимися риЗоидами водорослей.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.