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2,052 results for “Species tree”
FIGURES NJ1–NJ6. Neighbor-joining trees. Scale bar = 1%. Blue circles indicate Nearctic specimens, red circles Palearctic specimens, and mixed circles indicate a combination of the two; diamonds indicate outgroups. In parentheses are numbers of specimens per node. NJ1, Scardia amurensis; NJ2, Triaxomera parasitella; NJ3, Nemapogon cloacella; NJ4, Elabotia montelliella; NJ5, Tinea svenssoni; NJ6, Caloptilia suberinella. in Shared but overlooked: 30 species of Holarctic Microlepidoptera revealed by DNA barcodes and morphology
FIGURES NJ1–NJ6. Neighbor-joining trees. Scale bar = 1%. Blue circles indicate Nearctic specimens, red circles Palearctic specimens, and mixed circles indicate a combination of the two; diamonds indicate outgroups. In parentheses are numbers of specimens per node. NJ1, Scardia amurensis; NJ2, Triaxomera parasitella; NJ3, Nemapogon cloacella; NJ4, Elabotia montelliella; NJ5, Tinea svenssoni; NJ6, Caloptilia suberinella.
Figure 5. Maximum likelihood trees constructed from mitochondrial cytochrome c oxidase subunit I in Cryptic diversity in coastal Australasia: a morphological and mitonuclear genetic analysis of habitat-forming sibling species
Figure 5. Maximum likelihood trees constructed from mitochondrial cytochrome c oxidase subunit I (left; log likelihood: -399.5730) and nuclear adenine nucleotide transporter intron (right; log likelihood: -12170.8682) sequences of Pyura praeputialis and Pyura doppelgangera sp. nov. Nodal support from 1000 bootstrap replications (> 75%) is indicated next to some branches. Circles indicate regions in which a particular allele was present. For simplicity, allele frequencies are not indicated.
Figure 2. Minimum-evolution tree deduced from cytochrome c oxidase subunit I in DNA barcoding and morphology reveal exceptional species diversity of Scoparia (Lepidoptera: Crambidae) from the Hailuogou Glacier area, China
Figure 2. Minimum-evolution tree deduced from cytochrome c oxidase subunit I (COI) gene sequences. Sequences were corrected with the Kimura two-parameter substitution model. Codon positions included were 1st + 2nd + 3rd + noncoding. Values represented at the nodes of branches are bootstrap values (1000 replicates).
Figure 1. Neighbour-joining tree deduced from the cytochrome c oxidase subunit I in DNA barcoding and morphology reveal exceptional species diversity of Scoparia (Lepidoptera: Crambidae) from the Hailuogou Glacier area, China
Figure 1. Neighbour-joining tree deduced from the cytochrome c oxidase subunit I (COI) gene sequences using MEGA 5. Sequences were corrected with the Kimura two-parameter substitution model. Codon positions included were 1st + 2nd + 3rd + noncoding. Values represented at the nodes of branches are bootstrap values (1000 replicates).
Figure 2. Phylogenetic tree resulting from a in Host specialization and species diversity in the genus Stylops (Strepsiptera: Stylopidae), revealed by molecular phylogenetic analysis
Figure 2. Phylogenetic tree resulting from a Bayesian analysis of the partial sequence from the mitochondrial NADH gene. The names of the host Andrena bees are indicated with every Stylops voucher number. The posterior probabilities are given before the slash; the bootstrap values from the maximum-likelihood (ML) analysis are given after the slash. Posterior probability values lower than 0.9, and bootstrap values lower than 50, are considered as unsupported and are thus replaced by an asterisk (*); incongruent nodes between the two analyses are indicated by a dash (-). Branch support is omitted at the nodes that were unsupported in both the Bayesian and the ML analyses.
Figure 3. Phylogenetic tree resulting from a in Host specialization and species diversity in the genus Stylops (Strepsiptera: Stylopidae), revealed by molecular phylogenetic analysis
Figure 3. Phylogenetic tree resulting from a Bayesian analysis of the partial sequence from the nuclear EF1 gene. Names of host Andrena bees are indicated at every Stylops voucher number. The names of the host Andrena bees are indicated with every Stylops voucher number. The posterior probabilities are given before the slash; the bootstrap values from the maximum-likelihood (ML) analysis are given after the slash. Posterior probability values lower than 0.9, and bootstrap values lower than 50, are considered as unsupported and thus replaced by an asterisk (*); incongruent nodes between the two analyses are indicated by a dash (-). Branch support is omitted at the nodes that were unsupported in both the Bayesian and the ML analyses.
Figure 15. Bayesian tree inferred from D2-D3 in Phylogenetic relationships within the superfamily Desmodoroidea (Nematoda: Desmodorida), with descriptions of two new and one known species
Figure 15. Bayesian tree inferred from D2-D3 of LSU sequences under the general time-reversible (GTR) + proportion of invariable sites (I) + gamma distribution (G) model. Posterior probability (left) and bootstrap values (right) greater than or equal to 75% are given on appropriate clades. Taxa belonging to the Draconematidae and Epsilonematidae are shown in blue and red, respectively. The scale stands for substitutions per site.
Figure 1. Bayesian tree inferred from the 18S in A molecular analysis of the phylogenetic position of the suborder Cavernicola within the Tricladida (Platyhelminthes), with the description of a new species of stygobiont flatworm from Benin
Figure 1. Bayesian tree inferred from the 18S rDNA sequences showing the relationship of the new Novomitchellia species to other Tricladida species included in this analysis. Maximum likelihood (ML) yielded the same topology. Asterisks at nodes indicate posterior probabilities = 1/bootstrap values> 75% obtained respectively in the ML and Bayesian inference analyses. Scale bar: number of substitutions per nucleotide position.
FIGURE 2 in Phytophagous and predatory mites on olive trees in Tunisia. Catalogue, description of one new species and key for identification (Acari, Eriophyidae, Tetranychidae, Tenuipalpidae and Phytoseiidae)
FIGURE 2: Ventral shields of the female of Typhlodromus (Anthoseius) mathieui n. sp.
FIGURE 1 in Phytophagous and predatory mites on olive trees in Tunisia. Catalogue, description of one new species and key for identification (Acari, Eriophyidae, Tetranychidae, Tenuipalpidae and Phytoseiidae)
FIGURE 1: Dorsal shield and peritreme of the female of Typhlodromus (Anthoseius) mathieui n. sp.
FIGURE 4. Carapa wohllebenii. A. Shoot with flowers. B. Inflorescence. C–F in Carapa wohllebenii (Meliaceae), a new tree species from montane forests in the Democratic Republic of Congo, Rwanda, and Burundi
FIGURE 4. Carapa wohllebenii. A. Shoot with flowers. B. Inflorescence. C–F. Flowers. Photographs: E. Fischer, Rwanda, Gisakura, 18 September 2016. Scale bars: A, C–F. 5 mm; B. 5 cm.
FIGURE 7 in Carapa wohllebenii (Meliaceae), a new tree species from montane forests in the Democratic Republic of Congo, Rwanda, and Burundi
FIGURE 7. Carapa grandiflora. Holotype in Herb. K. Reproduced with permission of the Board of Trustees, Royal Botanic Gardens, Kew.
FIGURE 3. Carapa wohllebenii. A, C. Branches with leaves and fruits. B in Carapa wohllebenii (Meliaceae), a new tree species from montane forests in the Democratic Republic of Congo, Rwanda, and Burundi
FIGURE 3. Carapa wohllebenii. A, C. Branches with leaves and fruits. B. Leaf. Photographs: E. Fischer. A. Rwanda, Uwinka, 24 September 2015. B. C. Butare, 3 January 2016. Scale bar: A. 10 cm; B, C. 5 cm.
FIGURE 6 in Carapa wohllebenii (Meliaceae), a new tree species from montane forests in the Democratic Republic of Congo, Rwanda, and Burundi
FIGURE 6. Carapa wohllebenii. Holotype in Herb. BR, inflorescence kept separate in spirit. Reproduced with permission of the Botanic Garden Meise.
FIGURE 2. Leaf and leaflet shape. A–B. Carapa wohllebenii. A. Bouxin 192. B. Fischer 758 in Carapa wohllebenii (Meliaceae), a new tree species from montane forests in the Democratic Republic of Congo, Rwanda, and Burundi
FIGURE 2. Leaf and leaflet shape. A–B. Carapa wohllebenii. A. Bouxin 192. B. Fischer 758/16 (holotype). C–D. Carapa grandiflora. C. Fischer 633/12. D. Dawe 351 (holotype). Drawings by D. Killmann. Scale bar: 5 cm.
FIGURE 10 in Carapa wohllebenii (Meliaceae), a new tree species from montane forests in the Democratic Republic of Congo, Rwanda, and Burundi
FIGURE 10. Known distribution of Carapa wohllebenii and Carapa grandiflora. Dots represent only the examined specimens. Carapa grandiflora is additionally represented by two further localities in southwestern Uganda and one in western Tanzania close to Lake Tanganyika (specimens not examined).
FIGURE 5. Carapa wohllebenii. A. Shoots with leaves. B. Shoots with young leaves. C. Fruit. D in Carapa wohllebenii (Meliaceae), a new tree species from montane forests in the Democratic Republic of Congo, Rwanda, and Burundi
FIGURE 5. Carapa wohllebenii. A. Shoots with leaves. B. Shoots with young leaves. C. Fruit. D. Fruit opened showing seeds. Photographs: E. Fischer, Rwanda, Nyungwe National Park. A. Gisakura, 18 September 2016. B. Uwinka, 17 March 2017. C. Uwinka, 24 September 2015. D. Kamiranzovu, 11 September 2005. Scale bars: A–B. 10 cm; C–D. 5 cm.
FIGURE 9. Carapa grandiflora. A–F in Carapa wohllebenii (Meliaceae), a new tree species from montane forests in the Democratic Republic of Congo, Rwanda, and Burundi
FIGURE 9. Carapa grandiflora. A–F. Detail of inflorescence and flowers. G. Fruit. Photographs: E. Fischer, Rwanda, Nyungwe National Park. A–F. Cyamudongo Forest, 8 April 2015. G. Cyamudongo, 8 January 2016. Scale bars: A–F. 5 mm; G. 1 cm.
FIGURE 8 in Carapa wohllebenii (Meliaceae), a new tree species from montane forests in the Democratic Republic of Congo, Rwanda, and Burundi
FIGURE 8. Leaves of Carapa grandiflora. A. Adaxial surface. B. Abaxial surface. C. Leaves intact. Photographs: E. Fischer, Rwanda, Nyungwe National Park, Cyamudongo Forest, 8 April 2015. Scale bars: A–C. 10 cm.
FIGURE 1. Astrothelium mordonialense. A in Two new species of Astrothelium (Trypetheliaceae) with amyloid ascospores inhabiting the canopy of Quercus humboldtii trees in Colombia
FIGURE 1. Astrothelium mordonialense. A. Thallus with perithecia; B. Perithecia enlarged showing darkened ostiolar area. C. Hymenium showing asci and ascospores reacting IKI + blue; D. Ascopore. Scale = 1 mm in A–B, 100 µm in C, 10 µm in D.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.