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1,666
datasets available to search
ShareScore release 0.9.0
Dataset results
1,666 results for “human genome”
Landscape of Cohesin-Mediated Chromatin Loops in the Human Genome
GEO Series GSE134745. Homo sapiens. 126 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
HDR-CRISPR promotes targeted genome editing with reduced mutational burden in primary human cells [Amp-seq]
GEO Series GSE225450. Homo sapiens. 9 samples. Type: Other.
Genome-wide Transcription Factor binding maps reveal cell-specific changes in the regulatory architecture of human HSPC [ChIP-seq]
GEO Series GSE231425. Homo sapiens. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Genomic profiling of human spermatogonial stem cells [WGBS]
GEO Series GSE92278. Homo sapiens. 2 samples. Type: Methylation profiling by high throughput sequencing.
Whole-genome gene expression profiles of non-tumorous human lung tissues: GRNG set
GEO Series GSE23545. Homo sapiens. 445 samples. Type: Expression profiling by array.
Efficient immortalization of normal human mammary epithelial cells using two pathologically relevant agents does not require gross genomic alterations
GEO Series GSE48504. Homo sapiens. 47 samples. Type: Methylation profiling by genome tiling array; Genome binding/occupancy profiling by genome tiling array.
Genome-wide analysis of gene expression patterns in human prostate cancer (PCa)
GEO Series GSE69223. Homo sapiens. 30 samples. Type: Expression profiling by array.
Cisplatin DNA Damage and Repair Maps of the Human Genome at Single-nucleotide Resolution
GEO Series GSE82213. Homo sapiens. 14 samples. Type: Other.
Selectivity of ORC binding sites in the human genome and the relation to replication timing, fragile sites, and recurrent deletions in cancers
GEO Series GSE70165. Homo sapiens. 3 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Genome-wide study of human methylation profile of J-Lat cells upon EGCG-treatment and UHRF1 knockdown
GEO Series GSE139320. Homo sapiens. 5 samples. Type: Methylation profiling by genome tiling array.
Genome-wide chromatin accessibility changes in cultured primary human monocytes cultured at low density and high density.
GEO Series GSE166100. Homo sapiens. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Genome-wide analysis in human colorectal cancer cells reveals ischemia-mediated expression of motility genes via DNA hypomethylation (expression)
GEO Series GSE58049. Homo sapiens. 9 samples. Type: Expression profiling by array.
Simplitigs of the human genome (HG38)
<p>Simplitigs of the HG38 human reference genome for k=10,...,32.</p>
Transcriptome profiling of derived-hepatocyte progenitors from human iPSCs with nanoCAGE - part2 - genomic alignments (hg19 + hg38)
<p>This repository contains genomic alignments (BED files) of paired-end nanoCAGE sequencing data (CAGEscan data) collected from Illumina MiSeq run IDs "181114_M00528_0390_000000000-C7P58" (aka "NC_LIMMS3") and "190218_M00528_0406_000000000-CB4HR" (aka "NC_LIMMS4") FASTQ files were processed with the MOIRAI pipeline OP-WORKFLOW-CAGEscan-short-reads-v2.1 (Hasegawa et al. BMC Bioinformatics 2014 May 16;15:144. doi: 10.1186/1471-2105-15-144.). Filtered pairs of reads were aligned on the human genome assemblies hg19 and hg38. See tables below for a detailed description of the samples contained in each nanoCAGE library, including barcodes and index sequences used for the demultiplexing of sequencing reads. Corresponding raw sequencing data files (FASTQ files) were deposited at Zenodo under the following Digital Object Identifier: 10.5281/zenodo.2572390.</p> <p><em><strong>"181114_M00528_0390_000000000-C7P58" ("NC_LIMMS3"):</strong></em></p> <p><strong>sample_name group barcode_sequence index_sequence</strong><br> LIMMS43_04_PETRI_S4D7_rep1 iPSC_CLONE_TODAI ACAGAT NNNNNNNN<br> LIMMS44_24_PETRI_S4D7_rep2 iPSC_CLONE_TODAI ATCGTG NNNNNNNN<br> LIMMS45_31_PETRI_S4D7_rep3 iPSC_CLONE_TODAI CACGAT NNNNNNNN<br> LIMMS46_36_PETRI_S4D14_rep1 iPSC_CLONE_TODAI CACTGA NNNNNNNN<br> LIMMS47_46_PETRI_S4D14_rep2 iPSC_CLONE_TODAI CTGACG NNNNNNNN<br> LIMMS48_63_PETRI_S4D14_rep3 iPSC_CLONE_TODAI GAGTGA NNNNNNNN<br> LIMMS49_79_PETRI_CELLARTIS_rep1 iPSC_CLONE_TODAI GTATAC NNNNNNNN<br> LIMMS50_92_PETRI_CELLARTIS_rep2 iPSC_CLONE_TODAI TCGAGC NNNNNNNN<br> LIMMS51_09_PETRI_CELLARTIS_rep3 iPSC_CLONE_TODAI ACATGA NNNNNNNN<br> LIMMS52_21_PETRI_TODAI_rep1 iPSC_CLONE_CELLARTIS ATCATA NNNNNNNN<br> LIMMS53_33_PETRI_TODAI_rep2 iPSC_CLONE_CELLARTIS CACGTG NNNNNNNN<br> LIMMS54_45_PETRI_TODAI_rep3 iPSC_CLONE_CELLARTIS CGATGA NNNNNNNN<br> LIMMS55_57_iPSC_rep1 CONTROL_iPSC GAGATA NNNNNNNN</p> <p><em><strong>"190218_M00528_0406_000000000-CB4HR" ("NC_LIMMS4"):</strong></em></p> <p><strong>sample_name group barcode_sequence index_sequence</strong><br> LIMMS56_04_iPSC_rep4 CONTROL_iPSC ACAGAT NNNNNNNN<br> LIMMS57_24_LSECS_1_11 LSECS_PETRI_MONO ATCGTG NNNNNNNN<br> LIMMS58_31_LSECS_2_11 LSECS_PETRI_MONO CACGAT NNNNNNNN<br> LIMMS59_36_LSECS_3_11 LSECS_PETRI_MONO CACTGA NNNNNNNN<br> LIMMS60_46_LSECS_1-06 LSECS_PETRI_MONO CTGACG NNNNNNNN<br> LIMMS61_63_B3_MONO_11_D3 BC_MONO_D3 GAGTGA NNNNNNNN<br> LIMMS62_79_B9_CO_10_D14 BC_CO_D14 GTATAC NNNNNNNN<br> LIMMS63_92_B13_CO_11_D3 BC_CO_D3 TCGAGC NNNNNNNN<br> LIMMS64_09_P2_10_D14 PETRI_MONO ACATGA NNNNNNNN<br> LIMMS65_21_P3_10_D14 PETRI_MONO ATCATA NNNNNNNN<br> LIMMS66_33_P3_11_D14 PETRI_MONO CACGTG NNNNNNNN<br> LIMMS67_45_B1_MONO_10_D14 BC_MONO_D14 CGATGA NNNNNNNN<br> LIMMS68_57_B2_MONO_10_D14 BC_MONO_D14 GAGATA NNNNNNNN<br> LIMMS69_69_B1_MONO_11_D14 BC_MONO_D14 GCTCTC NNNNNNNN<br> LIMMS70_81_B2_MONO_11_D14 BC_MONO_D14 GTATGA NNNNNNNN<br> LIMMS71_93_B6_CO_10_D14 BC_CO_D14 TCGATA NNNNNNNN<br> LIMMS72_11_B7_CO_10_D14 BC_CO_D14 AGTAGC NNNNNNNN<br> LIMMS73_23_B8_CO_10_D14 BC_CO_D14 ATCGCA NNNNNNNN<br> LIMMS74_35_B9_CO_11_D3 BC_CO_D3 CACTCT NNNNNNNN<br> LIMMS75_47_B11_CO_11_D14 BC_CO_D14 CTGAGC NNNNNNNN<br> LIMMS76_59_B12_CO_11_D14 BC_CO_D14 GAGCGT NNNNNNNN<br> LIMMS77_71_B14_CO_11_D14 BC_CO_D14 GCTGCA NNNNNNNN<br> LIMMS78_83_B15_CO_11_D14 BC_CO_D14 TATAGC NNNNNNNN<br> LIMMS79_95_iPSC_rep1_4 CONTROL_iPSC TCGCGT NNNNNNNN</p>
Genomic Approaches to Dissect Human Host-pathogen Interactions in the Amazonian Rainforest
ClinicalTrials.gov study NCT05981378. IPD Sharing: NO. Countries: 0. Publications: 0.
Genome-wide maps of EED and H3K27me3 binding genes in WT and HBL1 KO human induced pluripotent stem cells (hiPSCs).
GEO Series GSE149323. Homo sapiens. 7 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Genome-wide CRISPR screen identifies Menin and SUZ12 as regulators of human developmental timing [ATAC-seq]
GEO Series GSE279031. Homo sapiens. 10 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Genome-wide maps of p53 binding sites in human embryonic stem cell H9 derived trilineage.
GEO Series GSE142050. Homo sapiens. 23 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Genome-wide transcriptome analysis of human papillomavirus type 16 infected primary keratinocytes [monolayer]
GEO Series GSE137361. Homo sapiens. 30 samples. Type: Expression profiling by high throughput sequencing.
Rhesus Macaque gene expression data obtained using Rhesus Macaque Array or Human Genome U133 Plus 2.0 Array
GEO Series GSE9531. Macaca mulatta; Homo sapiens. 20 samples. Type: Expression profiling by array.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.